Wall clock time and date at job start Tue Mar 31 2020 11:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00123 * 2 1 4 4 H 1.48504 * 109.47210 * 239.99925 * 3 2 1 5 5 H 1.48502 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47317 * 120.00103 * 3 2 1 7 7 C 1.37880 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47169 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99715 * 180.02562 * 11 10 9 13 13 H 1.08992 * 109.47459 * 324.99946 * 12 11 10 14 14 C 1.50701 * 109.46922 * 85.00228 * 12 11 10 15 15 O 1.20833 * 120.00106 * 359.97438 * 14 12 11 16 16 O 1.34228 * 120.00108 * 179.97438 * 14 12 11 17 17 C 1.50703 * 109.47109 * 205.00027 * 12 11 10 18 18 C 1.38222 * 119.98341 * 319.72813 * 17 12 11 19 19 C 1.38363 * 120.00811 * 179.72644 * 18 17 12 20 20 Cl 1.73601 * 120.00940 * 180.27250 * 19 18 17 21 21 C 1.38330 * 119.98641 * 0.52564 * 19 18 17 22 22 C 1.38332 * 119.97418 * 359.74776 * 21 19 18 23 23 Cl 1.73606 * 120.00709 * 180.02562 * 22 21 19 24 24 C 1.38216 * 119.98802 * 140.00066 * 17 12 11 25 25 H 0.97000 * 120.00044 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.47239 * 59.99745 * 9 7 2 27 27 H 1.08997 * 109.47344 * 299.99952 * 9 7 2 28 28 H 1.08994 * 109.46755 * 60.00443 * 10 9 7 29 29 H 1.09001 * 109.47015 * 299.99776 * 10 9 7 30 30 H 1.00903 * 111.00454 * 303.95511 * 11 10 9 31 31 H 0.96695 * 117.00593 * 179.97438 * 16 14 12 32 32 H 1.07991 * 119.99776 * 359.97438 * 18 17 12 33 33 H 1.08004 * 120.01496 * 179.77051 * 21 19 18 34 34 H 1.08004 * 119.99098 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4352 -6.0760 0.0018 13 1 3.3180 -5.8290 -0.5877 14 6 2.8474 -6.3877 1.4174 15 8 2.4158 -5.7263 2.3319 16 8 3.6941 -7.4000 1.6624 17 6 1.7506 -7.2770 -0.5981 18 6 0.4261 -7.5375 -0.3006 19 6 -0.2045 -8.6369 -0.8555 20 17 -1.8700 -8.9600 -0.4874 21 6 0.4938 -9.4815 -1.6996 22 6 1.8209 -9.2234 -1.9925 23 17 2.6979 -10.2825 -3.0523 24 6 2.4489 -8.1209 -1.4411 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 0.8745 -4.9842 0.7827 31 1 3.9297 -7.5616 2.5862 32 1 -0.1177 -6.8805 0.3620 33 1 0.0030 -10.3419 -2.1301 34 1 3.4852 -7.9195 -1.6694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065169.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:17 Heat of formation + Delta-G solvation = -106.609278 kcal Electronic energy + Delta-G solvation = -21205.853485 eV Core-core repulsion = 17575.087871 eV Total energy + Delta-G solvation = -3630.765614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84007 -40.37929 -37.98484 -37.76396 -37.32386 -36.77332 -35.18475 -33.24634 -31.75096 -30.80504 -28.10124 -25.80903 -23.97020 -23.90816 -22.48497 -21.79557 -19.30299 -18.53288 -18.45859 -18.26516 -17.21092 -16.86471 -16.50420 -16.44612 -15.80528 -15.51640 -15.25363 -14.99521 -14.88653 -14.32727 -14.06185 -13.60941 -13.34803 -13.19232 -13.05637 -12.86839 -12.70986 -12.63894 -12.48010 -12.33687 -12.13885 -12.03252 -11.96060 -11.74057 -11.44141 -11.31603 -10.55727 -9.96856 -9.79679 -9.70618 -8.19307 -6.30726 -0.10549 -0.07382 0.75675 1.03607 1.23442 1.41416 1.44573 1.52330 1.92627 2.34124 2.42819 3.04900 3.14594 3.34546 3.84084 3.89231 3.94621 4.06547 4.24591 4.31739 4.40272 4.48132 4.56361 4.92707 5.00061 5.03325 5.15363 5.35317 5.42322 5.49448 5.63588 5.70822 5.94999 6.07863 6.27359 6.85760 6.86185 7.38373 8.92697 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.003123 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.168895 B = 8963.822342 C = 9408.100630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.080 3.920 11 N -0.657 5.657 12 C 0.137 3.863 13 H 0.149 0.851 14 C 0.461 3.539 15 O -0.543 6.543 16 O -0.500 6.500 17 C -0.049 4.049 18 C -0.091 4.091 19 C -0.031 4.031 20 Cl -0.057 7.057 21 C -0.095 4.095 22 C -0.026 4.026 23 Cl -0.047 7.047 24 C -0.079 4.079 25 H 0.264 0.736 26 H 0.001 0.999 27 H -0.014 1.014 28 H 0.020 0.980 29 H 0.078 0.922 30 H 0.346 0.654 31 H 0.425 0.575 32 H 0.131 0.869 33 H 0.161 0.839 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 -24.062 -2.960 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.048 4.048 11 N -0.289 5.289 12 C 0.025 3.975 13 H 0.167 0.833 14 C 0.302 3.698 15 O -0.432 6.432 16 O -0.312 6.312 17 C -0.050 4.050 18 C -0.110 4.110 19 C -0.058 4.058 20 Cl -0.028 7.028 21 C -0.114 4.114 22 C -0.053 4.053 23 Cl -0.018 7.018 24 C -0.098 4.098 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.005 0.995 28 H 0.038 0.962 29 H 0.097 0.903 30 H 0.167 0.833 31 H 0.287 0.713 32 H 0.148 0.852 33 H 0.179 0.821 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.208 -23.833 -3.848 24.697 hybrid contribution 0.232 0.962 1.744 2.005 sum 5.440 -22.871 -2.105 23.603 Atomic orbital electron populations 1.70103 1.07838 1.27849 1.51317 1.25966 0.95746 1.03365 0.94634 0.85487 0.78246 0.78012 0.79212 1.18827 1.20957 1.19374 1.21563 0.93615 0.92100 1.51037 0.91894 1.18878 0.94274 0.92120 0.95166 1.21955 0.95958 0.87390 0.99506 1.60980 1.17566 1.00960 1.49348 1.20363 0.97647 0.90475 0.89039 0.83350 1.24770 0.75023 0.76629 0.93406 1.90783 1.54539 1.50425 1.47502 1.84515 1.59411 1.49002 1.38302 1.19051 0.93289 0.94528 0.98144 1.21023 0.94644 0.95673 0.99667 1.20689 0.86964 0.97326 1.00785 1.98392 1.15753 1.95094 1.93600 1.21088 0.92668 1.00304 0.97385 1.20640 0.92619 0.94482 0.97593 1.98395 1.75365 1.64373 1.63682 1.21140 1.01658 0.92072 0.94900 0.92773 0.98072 0.99525 0.96181 0.90332 0.83307 0.71284 0.85151 0.82139 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.67 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.75 5.23 29.85 0.16 1.91 16 10 C 0.08 3.23 5.32 86.30 0.46 3.69 16 11 N -0.66 -21.94 5.56 -499.35 -2.78 -24.72 16 12 C 0.14 3.41 2.70 43.42 0.12 3.53 16 13 H 0.15 3.07 7.66 -2.39 -0.02 3.05 16 14 C 0.46 11.72 7.43 71.24 0.53 12.25 16 15 O -0.54 -18.26 16.06 21.94 0.35 -17.91 16 16 O -0.50 -8.78 13.34 -51.40 -0.69 -9.46 16 17 C -0.05 -1.07 4.88 -19.87 -0.10 -1.16 16 18 C -0.09 -2.13 9.10 22.30 0.20 -1.93 16 19 C -0.03 -0.64 6.32 22.32 0.14 -0.50 16 20 Cl -0.06 -1.18 28.96 -2.72 -0.08 -1.26 16 21 C -0.10 -1.68 9.62 22.31 0.21 -1.46 16 22 C -0.03 -0.45 6.32 22.32 0.14 -0.31 16 23 Cl -0.05 -0.72 28.96 -2.72 -0.08 -0.80 16 24 C -0.08 -1.40 9.45 22.29 0.21 -1.19 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.02 0.83 7.62 -2.39 -0.02 0.81 16 29 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 30 H 0.35 12.37 7.10 -89.69 -0.64 11.73 16 31 H 0.43 4.15 9.10 -74.06 -0.67 3.48 16 32 H 0.13 3.34 7.25 -2.92 -0.02 3.32 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.16 2.18 8.04 -2.91 -0.02 2.16 16 Total: -1.00 -69.00 333.18 1.67 -67.33 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -0.15 Total: 12.73 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 2.77 Total: -15.34 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.49 Total: -81.51 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.33 Total: -27.37 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.16 Total: -2.06 kcal Total: -69.00 1.67 -67.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065169.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.277 kcal (2) G-P(sol) polarization free energy of solvation -69.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds