Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99993 * 2 1 4 4 H 1.48493 * 109.47475 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47143 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47548 * 59.99864 * 3 2 1 7 7 C 1.38807 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99913 * 157.04757 * 7 2 1 9 9 N 1.36937 * 120.00269 * 337.04285 * 7 2 1 10 10 C 1.46500 * 120.00108 * 326.14073 * 9 7 2 11 11 C 1.53001 * 109.47247 * 274.99851 * 10 9 7 12 12 C 1.50699 * 109.47398 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99637 * 0.02562 * 12 11 10 14 14 O 1.34222 * 120.00316 * 179.97438 * 12 11 10 15 15 S 1.65601 * 120.00148 * 146.13915 * 9 7 2 16 16 O 1.42103 * 106.40178 * 29.62683 * 15 9 7 17 17 O 1.42098 * 106.40341 * 162.54598 * 15 9 7 18 18 C 1.76192 * 107.21870 * 276.08767 * 15 9 7 19 19 C 1.38227 * 120.01363 * 115.00117 * 18 15 9 20 20 C 1.38225 * 120.02358 * 179.97438 * 19 18 15 21 21 C 1.38256 * 120.05251 * 0.02562 * 20 19 18 22 22 C 1.38172 * 120.02916 * 359.97438 * 21 20 19 23 23 C 1.38435 * 120.01457 * 294.72309 * 18 15 9 24 24 F 1.35101 * 120.02212 * 359.97438 * 23 18 15 25 25 H 0.96996 * 119.99750 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46882 * 34.99563 * 10 9 7 27 27 H 1.08993 * 109.47151 * 155.00078 * 10 9 7 28 28 H 1.08998 * 109.47000 * 300.00402 * 11 10 9 29 29 H 1.09009 * 109.47061 * 59.99888 * 11 10 9 30 30 H 0.96702 * 117.00402 * 179.97438 * 14 12 11 31 31 H 1.07998 * 119.98807 * 359.97438 * 19 18 15 32 32 H 1.07998 * 119.96775 * 179.97438 * 20 19 18 33 33 H 1.08007 * 119.98882 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.01660 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0262 -1.2393 -0.3642 9 7 1.4069 -2.3409 0.4636 10 6 0.4467 -2.2642 1.5674 11 6 1.1978 -2.2960 2.8999 12 6 0.2101 -2.2165 4.0354 13 8 -0.9732 -2.1425 3.8026 14 8 0.6448 -2.2290 5.3052 15 16 1.7627 -3.8047 -0.2241 16 8 3.1001 -3.7122 -0.6955 17 8 1.3302 -4.7965 0.6970 18 6 0.7427 -3.9723 -1.6510 19 6 1.3152 -4.0207 -2.9082 20 6 0.5152 -4.1527 -4.0277 21 6 -0.8581 -4.2360 -3.8915 22 6 -1.4326 -4.1878 -2.6358 23 6 -0.6318 -4.0614 -1.5131 24 9 -1.1920 -4.0203 -0.2843 25 1 -0.4849 0.8400 0.0004 26 1 -0.1202 -1.3362 1.4919 27 1 -0.2359 -3.1123 1.5147 28 1 1.7647 -3.2239 2.9753 29 1 1.8804 -1.4478 2.9526 30 1 -0.0262 -2.1755 5.9995 31 1 2.3878 -3.9554 -3.0159 32 1 0.9634 -4.1900 -5.0096 33 1 -1.4822 -4.3387 -4.7670 34 1 -2.5054 -4.2524 -2.5297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = -177.123161 kcal Electronic energy + Delta-G solvation = -25498.427811 eV Core-core repulsion = 21438.311817 eV Total energy + Delta-G solvation = -4060.115994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.48344 -39.77915 -38.35052 -36.34650 -35.85282 -35.57664 -34.50884 -32.18910 -30.83373 -30.20910 -29.97837 -25.44957 -23.29332 -22.86766 -22.27688 -20.46574 -18.62100 -17.97136 -17.74934 -16.98465 -16.55865 -16.24655 -15.92343 -15.78052 -15.46786 -15.11800 -14.68479 -14.43646 -14.30201 -13.70055 -13.37200 -12.99888 -12.89140 -12.69864 -12.32928 -12.03464 -11.96616 -11.53235 -11.43529 -11.14416 -11.13564 -11.07493 -10.82837 -10.78152 -10.70297 -10.47438 -10.09064 -9.99613 -9.83862 -9.39273 -8.93991 -8.38109 -8.04745 -6.69896 -4.28383 1.23405 1.57604 1.69676 2.68189 3.01187 3.10855 3.17174 3.46905 3.79689 3.90993 4.38152 4.59050 4.63102 4.91228 5.05303 5.15766 5.41091 5.55738 5.61021 5.78378 5.87367 5.99395 6.03008 6.29162 6.31586 6.42682 6.47040 6.52860 6.61247 6.84409 7.05708 7.08926 7.23287 7.44607 8.14129 8.31653 8.54314 9.00950 10.23809 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.006972 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.841928 B = 4015.026587 C = 5001.611273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.036 3.964 3 Si 0.923 3.077 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.116 0.884 9 N -0.796 5.796 10 C 0.129 3.871 11 C -0.127 4.127 12 C 0.485 3.515 13 O -0.514 6.514 14 O -0.523 6.523 15 S 2.525 3.475 16 O -0.981 6.981 17 O -0.998 6.998 18 C -0.684 4.684 19 C -0.006 4.006 20 C -0.161 4.161 21 C -0.063 4.063 22 C -0.181 4.181 23 C 0.195 3.805 24 F -0.123 7.123 25 H 0.278 0.722 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.402 0.598 31 H 0.142 0.858 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 -1.362 -1.060 1.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.748 3.252 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.133 0.867 9 N -0.619 5.619 10 C 0.002 3.998 11 C -0.167 4.167 12 C 0.327 3.673 13 O -0.402 6.402 14 O -0.335 6.335 15 S 2.625 3.375 16 O -0.971 6.971 17 O -0.987 6.987 18 C -0.762 4.762 19 C -0.025 4.025 20 C -0.180 4.180 21 C -0.082 4.082 22 C -0.200 4.200 23 C 0.174 3.826 24 F -0.101 7.101 25 H 0.089 0.911 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.259 0.741 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.669 -2.216 -1.212 2.613 hybrid contribution -0.973 0.935 -0.081 1.352 sum -1.642 -1.281 -1.293 2.452 Atomic orbital electron populations 1.69981 1.06560 1.28954 1.39456 1.25884 0.95338 1.01155 0.95534 0.85901 0.80547 0.80367 0.78420 1.18215 1.20216 1.19985 1.19975 0.96259 0.83832 1.39541 0.86668 1.53728 1.52482 1.21941 1.33733 1.21254 0.90384 1.06728 0.81468 1.21861 0.97947 1.05793 0.91089 1.23689 0.89361 0.71186 0.83092 1.90701 1.19031 1.45553 1.84912 1.84583 1.45513 1.85937 1.17459 1.11668 0.76228 0.76427 0.73135 1.93348 1.35054 1.87116 1.81552 1.93371 1.82889 1.61000 1.61451 1.32214 1.07675 1.13934 1.22365 1.20825 1.00544 0.90931 0.90239 1.21242 0.93926 1.03930 0.98880 1.21044 0.95110 0.95672 0.96343 1.21129 1.00176 1.06565 0.92135 1.17068 0.90192 0.95126 0.80168 1.91555 1.85316 1.92791 1.40428 0.91100 0.86232 0.90643 0.88113 0.87004 0.74085 0.84046 0.85505 0.85380 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.32 11.25 55.49 0.62 -18.69 16 2 C 0.04 0.81 5.00 -17.43 -0.09 0.72 16 3 Si 0.92 17.61 29.61 -169.99 -5.03 12.58 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.25 -5.80 9.18 -15.06 -0.14 -5.94 16 8 H 0.12 2.68 7.46 -52.48 -0.39 2.29 16 9 N -0.80 -18.70 2.84 -59.91 -0.17 -18.87 16 10 C 0.13 2.91 4.16 -4.04 -0.02 2.89 16 11 C -0.13 -2.44 6.11 -27.88 -0.17 -2.61 16 12 C 0.48 8.71 8.33 36.01 0.30 9.01 16 13 O -0.51 -10.66 16.74 -18.75 -0.31 -10.98 16 14 O -0.52 -7.32 13.42 -39.24 -0.53 -7.84 16 15 S 2.53 59.99 5.26 -107.50 -0.57 59.42 16 16 O -0.98 -24.38 15.99 -57.17 -0.91 -25.30 16 17 O -1.00 -25.15 16.19 -57.17 -0.93 -26.07 16 18 C -0.68 -14.96 5.91 -39.51 -0.23 -15.20 16 19 C -0.01 -0.12 9.55 -39.59 -0.38 -0.50 16 20 C -0.16 -2.52 10.04 -39.58 -0.40 -2.92 16 21 C -0.06 -0.95 10.04 -39.60 -0.40 -1.34 16 22 C -0.18 -3.13 10.03 -39.51 -0.40 -3.52 16 23 C 0.19 4.13 7.21 -39.42 -0.28 3.84 16 24 F -0.12 -2.75 14.41 2.25 0.03 -2.72 16 25 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 26 H 0.12 2.87 5.25 -51.93 -0.27 2.60 16 27 H 0.08 1.77 5.59 -51.93 -0.29 1.48 16 28 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 30 H 0.40 3.66 9.10 45.56 0.41 4.08 16 31 H 0.14 2.55 7.33 -52.49 -0.38 2.16 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -30.97 316.11 -7.40 -38.37 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -2.17 Total: 10.89 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.20 Total: -15.55 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.45 Total: -37.56 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -2.68 Total: -70.19 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.03 Total: -2.72 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 59.99 SS G_CDS: -0.57 Total: 59.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.97 -7.40 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.753 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds