Wall clock time and date at job start Tue Mar 31 2020 12:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99993 * 2 1 4 4 H 1.48493 * 109.47475 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47143 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47548 * 59.99864 * 3 2 1 7 7 C 1.38807 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99913 * 157.04757 * 7 2 1 9 9 N 1.36937 * 120.00269 * 337.04285 * 7 2 1 10 10 C 1.46500 * 120.00108 * 326.14073 * 9 7 2 11 11 C 1.53001 * 109.47247 * 274.99851 * 10 9 7 12 12 C 1.50699 * 109.47398 * 179.97438 * 11 10 9 13 13 O 1.20823 * 119.99637 * 0.02562 * 12 11 10 14 14 O 1.34222 * 120.00316 * 179.97438 * 12 11 10 15 15 S 1.65601 * 120.00148 * 146.13915 * 9 7 2 16 16 O 1.42103 * 106.40178 * 29.62683 * 15 9 7 17 17 O 1.42098 * 106.40341 * 162.54598 * 15 9 7 18 18 C 1.76192 * 107.21870 * 276.08767 * 15 9 7 19 19 C 1.38227 * 120.01363 * 115.00117 * 18 15 9 20 20 C 1.38225 * 120.02358 * 179.97438 * 19 18 15 21 21 C 1.38256 * 120.05251 * 0.02562 * 20 19 18 22 22 C 1.38172 * 120.02916 * 359.97438 * 21 20 19 23 23 C 1.38435 * 120.01457 * 294.72309 * 18 15 9 24 24 F 1.35101 * 120.02212 * 359.97438 * 23 18 15 25 25 H 0.96996 * 119.99750 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46882 * 34.99563 * 10 9 7 27 27 H 1.08993 * 109.47151 * 155.00078 * 10 9 7 28 28 H 1.08998 * 109.47000 * 300.00402 * 11 10 9 29 29 H 1.09009 * 109.47061 * 59.99888 * 11 10 9 30 30 H 0.96702 * 117.00402 * 179.97438 * 14 12 11 31 31 H 1.07998 * 119.98807 * 359.97438 * 19 18 15 32 32 H 1.07998 * 119.96775 * 179.97438 * 20 19 18 33 33 H 1.08007 * 119.98882 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.01660 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0262 -1.2393 -0.3642 9 7 1.4069 -2.3409 0.4636 10 6 0.4467 -2.2642 1.5674 11 6 1.1978 -2.2960 2.8999 12 6 0.2101 -2.2165 4.0354 13 8 -0.9732 -2.1425 3.8026 14 8 0.6448 -2.2290 5.3052 15 16 1.7627 -3.8047 -0.2241 16 8 3.1001 -3.7122 -0.6955 17 8 1.3302 -4.7965 0.6970 18 6 0.7427 -3.9723 -1.6510 19 6 1.3152 -4.0207 -2.9082 20 6 0.5152 -4.1527 -4.0277 21 6 -0.8581 -4.2360 -3.8915 22 6 -1.4326 -4.1878 -2.6358 23 6 -0.6318 -4.0614 -1.5131 24 9 -1.1920 -4.0203 -0.2843 25 1 -0.4849 0.8400 0.0004 26 1 -0.1202 -1.3362 1.4919 27 1 -0.2359 -3.1123 1.5147 28 1 1.7647 -3.2239 2.9753 29 1 1.8804 -1.4478 2.9526 30 1 -0.0262 -2.1755 5.9995 31 1 2.3878 -3.9554 -3.0159 32 1 0.9634 -4.1900 -5.0096 33 1 -1.4822 -4.3387 -4.7670 34 1 -2.5054 -4.2524 -2.5297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:47 Heat of formation + Delta-G solvation = -199.193987 kcal Electronic energy + Delta-G solvation = -25499.384874 eV Core-core repulsion = 21438.311817 eV Total energy + Delta-G solvation = -4061.073057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.09443 -41.21471 -39.72066 -38.01488 -37.75427 -37.00056 -36.42898 -33.93270 -32.23176 -31.84762 -31.39194 -27.18385 -24.94509 -24.30395 -23.69547 -21.96163 -20.39027 -19.57749 -19.20930 -18.62115 -18.24388 -17.84090 -17.44504 -17.34159 -16.94967 -16.73808 -16.35745 -16.05224 -15.78484 -15.12357 -15.07037 -14.55732 -14.49129 -14.21756 -13.89636 -13.46010 -13.34918 -13.22218 -13.08860 -12.81053 -12.72599 -12.65333 -12.51668 -12.50385 -12.43084 -12.01319 -11.73942 -11.60107 -11.48059 -11.11587 -10.35820 -9.84724 -9.76536 -8.43558 -6.10711 -0.25833 -0.01497 0.18029 1.23440 1.49645 1.55443 1.68884 2.05266 2.29973 2.44179 2.68144 2.84469 3.11842 3.22302 3.58893 3.91710 4.01816 4.03780 4.16532 4.28776 4.38189 4.51834 4.67388 4.71424 4.82323 4.95651 5.04064 5.17727 5.27205 5.29128 5.31760 5.57158 5.68651 5.88443 6.34821 6.76714 7.04272 7.22841 8.51362 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.006972 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.841928 B = 4015.026587 C = 5001.611273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.112 0.888 9 N -0.802 5.802 10 C 0.132 3.868 11 C -0.129 4.129 12 C 0.496 3.504 13 O -0.547 6.547 14 O -0.507 6.507 15 S 2.527 3.473 16 O -1.002 7.002 17 O -1.023 7.023 18 C -0.716 4.716 19 C -0.028 4.028 20 C -0.148 4.148 21 C -0.046 4.046 22 C -0.181 4.181 23 C 0.154 3.846 24 F -0.142 7.142 25 H 0.283 0.717 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.427 0.573 31 H 0.142 0.858 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -0.601 -2.653 2.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.205 4.205 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.414 4.414 8 H 0.129 0.871 9 N -0.625 5.625 10 C 0.005 3.995 11 C -0.168 4.168 12 C 0.339 3.661 13 O -0.438 6.438 14 O -0.320 6.320 15 S 2.631 3.369 16 O -0.992 6.992 17 O -1.013 7.013 18 C -0.798 4.798 19 C -0.047 4.047 20 C -0.166 4.166 21 C -0.064 4.064 22 C -0.200 4.200 23 C 0.134 3.866 24 F -0.121 7.121 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.288 0.712 31 H 0.160 0.840 32 H 0.190 0.810 33 H 0.200 0.800 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.867 -1.464 -2.738 3.223 hybrid contribution -0.963 0.623 0.311 1.189 sum -1.831 -0.841 -2.426 3.154 Atomic orbital electron populations 1.70061 1.07880 1.29946 1.39829 1.26628 0.95846 1.03635 0.94437 0.84974 0.79536 0.76303 0.78453 1.17593 1.19975 1.19382 1.20137 0.96344 0.84317 1.40634 0.87058 1.53699 1.52776 1.21677 1.34330 1.21125 0.90448 1.04979 0.82928 1.21759 0.98154 1.06618 0.90317 1.23284 0.88293 0.70469 0.84036 1.90697 1.20157 1.47271 1.85641 1.84501 1.46123 1.84942 1.16475 1.11296 0.75918 0.76282 0.73373 1.93298 1.36474 1.87400 1.82006 1.93317 1.83194 1.62005 1.62809 1.31862 1.08067 1.17203 1.22665 1.21079 1.01230 0.91891 0.90528 1.21779 0.94218 1.01059 0.99534 1.21708 0.95394 0.92326 0.96961 1.21588 1.01359 1.05252 0.91842 1.17563 0.90645 0.97622 0.80760 1.91499 1.85473 1.93280 1.41840 0.90666 0.87702 0.92558 0.87833 0.85523 0.71155 0.84046 0.80981 0.79966 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.53 11.25 21.65 0.24 -40.29 16 2 C 0.01 0.32 5.00 84.86 0.42 0.74 16 3 Si 0.99 35.58 29.61 68.60 2.03 37.62 16 4 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 6 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.27 -12.76 9.18 84.03 0.77 -11.99 16 8 H 0.11 5.31 7.46 -2.91 -0.02 5.29 16 9 N -0.80 -39.15 2.84 -343.45 -0.98 -40.13 16 10 C 0.13 6.24 4.16 86.38 0.36 6.60 16 11 C -0.13 -5.05 6.11 29.85 0.18 -4.86 16 12 C 0.50 17.82 8.33 71.24 0.59 18.42 16 13 O -0.55 -23.07 16.74 21.97 0.37 -22.70 16 14 O -0.51 -13.36 13.42 -51.34 -0.69 -14.05 16 15 S 2.53 125.46 5.26 -56.49 -0.30 125.16 16 16 O -1.00 -51.75 15.99 -128.00 -2.05 -53.79 16 17 O -1.02 -54.35 16.19 -128.00 -2.07 -56.42 16 18 C -0.72 -32.09 5.91 22.31 0.13 -31.96 16 19 C -0.03 -1.06 9.55 22.26 0.21 -0.85 16 20 C -0.15 -4.09 10.04 22.27 0.22 -3.87 16 21 C -0.05 -1.18 10.04 22.26 0.22 -0.95 16 22 C -0.18 -5.92 10.03 22.31 0.22 -5.69 16 23 C 0.15 6.65 7.21 22.38 0.16 6.81 16 24 F -0.14 -6.72 14.41 44.97 0.65 -6.08 16 25 H 0.28 12.66 8.31 -92.71 -0.77 11.88 16 26 H 0.11 5.26 5.25 -2.39 -0.01 5.25 16 27 H 0.06 2.82 5.59 -2.39 -0.01 2.81 16 28 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.13 4.51 8.14 -2.38 -0.02 4.49 16 30 H 0.43 6.85 9.10 -74.06 -0.67 6.18 16 31 H 0.14 5.13 7.33 -2.91 -0.02 5.11 16 32 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -70.39 316.11 1.21 -69.18 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.50 Total: 29.12 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 3.51 Total: -27.61 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.73 Total: -80.42 kcal Atomic # 8 Polarization: -142.53 SS G_CDS: -4.44 Total: -146.97 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.65 Total: -6.08 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 16 Polarization: 125.46 SS G_CDS: -0.30 Total: 125.16 kcal Total: -70.39 1.21 -69.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.016 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds