Wall clock time and date at job start Tue Mar 31 2020 12:01:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30639 * 1
3 3 Si 1.86799 * 120.00429 * 2 1
4 4 H 1.48500 * 109.47230 * 270.00334 * 3 2 1
5 5 H 1.48500 * 109.46896 * 29.99846 * 3 2 1
6 6 H 1.48500 * 109.47347 * 149.99805 * 3 2 1
7 7 C 1.40237 * 120.00052 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00351 * 176.17390 * 7 2 1
9 9 C 1.41085 * 119.99824 * 356.17565 * 7 2 1
10 10 C 1.40903 * 120.09893 * 214.53858 * 9 7 2
11 11 C 1.36298 * 119.89233 * 180.02562 * 10 9 7
12 12 C 1.40049 * 120.10530 * 0.02562 * 11 10 9
13 13 C 1.47582 * 119.89646 * 179.97438 * 12 11 10
14 14 O 1.21596 * 120.00084 * 0.02562 * 13 12 11
15 15 N 1.34779 * 119.99652 * 179.97438 * 13 12 11
16 16 C 1.39348 * 119.99663 * 185.53397 * 15 13 12
17 17 C 1.38156 * 123.52266 * 353.37542 * 16 15 13
18 18 C 1.33561 * 115.09602 * 179.97438 * 17 16 15
19 19 S 1.70554 * 111.22526 * 0.02562 * 18 17 16
20 20 C 1.37597 * 123.51810 * 173.37200 * 16 15 13
21 21 C 1.41457 * 125.48708 * 359.96593 * 20 16 15
22 22 O 1.21709 * 120.00024 * 0.02562 * 21 20 16
23 23 O 1.34975 * 119.99950 * 180.02562 * 21 20 16
24 24 C 1.40046 * 120.20424 * 0.25538 * 12 11 10
25 25 C 1.36303 * 120.10206 * 359.44228 * 24 12 11
26 26 H 0.96994 * 119.99635 * 359.97438 * 1 2 3
27 27 H 1.08002 * 120.05412 * 359.97438 * 10 9 7
28 28 H 1.08004 * 119.94823 * 179.97438 * 11 10 9
29 29 H 0.96997 * 120.00009 * 5.54020 * 15 13 12
30 30 H 1.08007 * 122.45056 * 359.97438 * 17 16 15
31 31 H 1.08001 * 124.38410 * 180.26288 * 18 17 16
32 32 H 0.96694 * 113.99974 * 179.97438 * 23 21 20
33 33 H 1.07994 * 119.94872 * 179.72792 * 24 12 11
34 34 H 1.07999 * 120.04994 * 180.25087 * 25 24 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2405 1.6177 0.0000
4 1 2.4880 2.0464 -1.4001
5 1 1.4380 2.6526 0.7000
6 1 3.5380 1.4401 0.7001
7 6 2.0076 -1.2145 0.0005
8 1 3.0858 -1.2156 -0.0619
9 6 1.3045 -2.4349 0.0826
10 6 1.8609 -3.5255 0.7800
11 6 1.1783 -4.7027 0.8562
12 6 -0.0740 -4.8295 0.2422
13 6 -0.8090 -6.1065 0.3271
14 8 -0.3273 -7.0463 0.9298
15 7 -2.0145 -6.2307 -0.2626
16 6 -2.7597 -7.3949 -0.0864
17 6 -2.2814 -8.5157 0.5645
18 6 -3.1388 -9.5373 0.6378
19 16 -4.6206 -9.1550 -0.1151
20 6 -4.0488 -7.5482 -0.5425
21 6 -4.7943 -6.5703 -1.2416
22 8 -4.2982 -5.4859 -1.4851
23 8 -6.0560 -6.8396 -1.6386
24 6 -0.6284 -3.7502 -0.4571
25 6 0.0442 -2.5671 -0.5333
26 1 -0.4849 0.8400 0.0004
27 1 2.8272 -3.4290 1.2528
28 1 1.6041 -5.5394 1.3902
29 1 -2.3634 -5.5096 -0.8097
30 1 -1.2870 -8.5625 0.9833
31 1 -2.9230 -10.4815 1.1156
32 1 -6.4846 -6.1110 -2.1080
33 1 -1.5924 -3.8539 -0.9327
34 1 -0.3860 -1.7340 -1.0694
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601076441.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:01:08
Heat of formation + Delta-G solvation = -71.428752 kcal
Electronic energy + Delta-G solvation = -22736.957769 eV
Core-core repulsion = 19112.194253 eV
Total energy + Delta-G solvation = -3624.763516 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 317.055 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.75994 -39.70303 -37.85152 -36.82621 -35.97716 -34.01096 -33.69111 -30.48092
-29.88980 -29.54683 -26.44303 -24.81317 -22.61477 -22.40678 -21.12372 -20.29043
-19.21394 -18.62954 -17.65839 -17.46763 -17.31521 -15.83171 -15.56881 -15.44760
-15.13397 -14.76900 -14.65265 -14.08597 -13.68708 -13.34856 -13.29362 -13.00390
-12.89032 -12.49816 -12.18359 -11.91772 -11.65480 -11.62814 -11.31937 -11.07740
-10.96269 -10.72234 -10.64561 -10.47301 -10.08789 -9.64035 -9.50098 -9.12128
-8.89505 -7.90827 -7.79896 -7.50479 -6.96355 -4.72467 0.29100 1.47052
1.86353 1.93918 2.32162 2.84754 2.93189 2.94207 2.97577 3.02809
3.22661 3.48274 3.70398 3.77090 4.49809 4.78413 5.09860 5.41928
5.46166 5.54974 5.78439 5.95082 6.08968 6.16827 6.21940 6.36704
6.69159 6.78083 6.79687 6.91461 7.04415 7.37024 7.49136 7.67949
7.78866 7.79744 7.90448 7.99853 8.34880 8.56514 8.62492 8.65799
9.91534
Molecular weight = 317.06amu
Principal moments of inertia in cm(-1)
A = 0.022859 B = 0.003096 C = 0.002749
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1224.614939 B = 9042.309640 C =10183.200401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.784 5.784
2 C 0.068 3.932
3 Si 0.923 3.077
4 H -0.266 1.266
5 H -0.274 1.274
6 H -0.259 1.259
7 C -0.441 4.441
8 H 0.085 0.915
9 C 0.129 3.871
10 C -0.229 4.229
11 C -0.022 4.022
12 C -0.281 4.281
13 C 0.570 3.430
14 O -0.545 6.545
15 N -0.645 5.645
16 C 0.273 3.727
17 C -0.181 4.181
18 C -0.197 4.197
19 S 0.218 5.782
20 C -0.363 4.363
21 C 0.563 3.437
22 O -0.525 6.525
23 O -0.508 6.508
24 C -0.065 4.065
25 C -0.165 4.165
26 H 0.286 0.714
27 H 0.102 0.898
28 H 0.105 0.895
29 H 0.427 0.573
30 H 0.192 0.808
31 H 0.174 0.826
32 H 0.410 0.590
33 H 0.094 0.906
34 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.092 -10.958 -1.712 14.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.408 5.408
2 C -0.151 4.151
3 Si 0.746 3.254
4 H -0.191 1.191
5 H -0.199 1.199
6 H -0.183 1.183
7 C -0.470 4.470
8 H 0.103 0.897
9 C 0.125 3.875
10 C -0.248 4.248
11 C -0.041 4.041
12 C -0.285 4.285
13 C 0.369 3.631
14 O -0.427 6.427
15 N -0.290 5.290
16 C 0.155 3.845
17 C -0.214 4.214
18 C -0.336 4.336
19 S 0.483 5.517
20 C -0.485 4.485
21 C 0.411 3.589
22 O -0.418 6.418
23 O -0.319 6.319
24 C -0.085 4.085
25 C -0.184 4.184
26 H 0.097 0.903
27 H 0.120 0.880
28 H 0.123 0.877
29 H 0.271 0.729
30 H 0.209 0.791
31 H 0.191 0.809
32 H 0.267 0.733
33 H 0.112 0.888
34 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -9.948 -12.155 -1.374 15.767
hybrid contribution 1.063 2.310 -0.237 2.554
sum -8.886 -9.845 -1.611 13.359
Atomic orbital electron populations
1.69669 1.07689 1.29849 1.33638 1.26116 0.95051 1.01885 0.92085
0.86062 0.80298 0.79531 0.79488 1.19072 1.19910 1.18311 1.19848
0.95282 0.90135 1.41709 0.89698 1.17906 0.91750 0.91772 0.86023
1.20850 1.01889 0.94928 1.07175 1.20365 0.92319 0.96458 0.94994
1.18762 0.99670 0.92863 1.17246 1.18947 0.78864 0.88956 0.76364
1.90439 1.67740 1.40564 1.43922 1.43907 1.18704 1.16827 1.49587
1.17445 0.87988 0.87909 0.91135 1.20978 1.05254 0.90859 1.04296
1.25450 0.99076 1.04194 1.04849 1.82914 1.12749 1.04688 1.51311
1.21691 0.99200 1.02972 1.24601 1.17849 0.79845 0.85267 0.75987
1.90872 1.70441 1.24821 1.55659 1.85019 1.27903 1.47824 1.71111
1.20655 0.97424 0.93504 0.96868 1.21277 0.97512 0.96378 1.03248
0.90271 0.87961 0.87727 0.72914 0.79143 0.80886 0.73265 0.88773
0.84918
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -18.83 10.59 55.56 0.59 -18.24 16
2 C 0.07 1.58 5.42 -17.31 -0.09 1.49 16
3 Si 0.92 17.32 29.56 -169.99 -5.03 12.29 16
4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16
5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16
6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16
7 C -0.44 -10.80 9.03 -37.75 -0.34 -11.14 16
8 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16
9 C 0.13 3.22 5.55 -106.80 -0.59 2.63 16
10 C -0.23 -5.34 9.73 -39.27 -0.38 -5.73 16
11 C -0.02 -0.50 9.52 -39.60 -0.38 -0.88 16
12 C -0.28 -6.33 5.89 -104.73 -0.62 -6.95 16
13 C 0.57 11.97 7.72 -12.45 -0.10 11.87 16
14 O -0.55 -11.73 13.09 5.28 0.07 -11.66 16
15 N -0.65 -12.14 5.27 -11.39 -0.06 -12.20 16
16 C 0.27 4.58 6.63 -84.71 -0.56 4.01 16
17 C -0.18 -2.74 9.09 -41.25 -0.37 -3.12 16
18 C -0.20 -2.25 10.89 29.09 0.32 -1.93 16
19 S 0.22 2.40 22.82 -107.50 -2.45 -0.06 16
20 C -0.36 -5.36 6.28 -38.59 -0.24 -5.61 16
21 C 0.56 8.17 8.08 31.96 0.26 8.43 16
22 O -0.53 -8.98 15.22 -19.43 -0.30 -9.27 16
23 O -0.51 -5.44 13.30 -41.25 -0.55 -5.99 16
24 C -0.07 -1.48 9.47 -39.60 -0.37 -1.86 16
25 C -0.16 -4.05 8.61 -39.27 -0.34 -4.39 16
26 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16
27 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16
28 H 0.10 2.22 7.63 -52.48 -0.40 1.82 16
29 H 0.43 8.03 4.28 -40.82 -0.17 7.85 16
30 H 0.19 3.20 5.21 -52.55 -0.27 2.93 16
31 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16
32 H 0.41 2.57 8.98 45.56 0.41 2.98 16
33 H 0.09 1.95 6.38 -52.49 -0.34 1.62 16
34 H 0.13 3.35 6.13 -52.49 -0.32 3.03 16
LS Contribution 313.96 15.07 4.73 4.73
Total: -1.00 -28.46 313.96 -8.30 -36.76
By element:
Atomic # 1 Polarization: 18.29 SS G_CDS: -1.49 Total: 16.80 kcal
Atomic # 6 Polarization: -9.34 SS G_CDS: -3.82 Total: -13.16 kcal
Atomic # 7 Polarization: -30.97 SS G_CDS: 0.53 Total: -30.44 kcal
Atomic # 8 Polarization: -26.15 SS G_CDS: -0.78 Total: -26.92 kcal
Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal
Atomic # 16 Polarization: 2.40 SS G_CDS: -2.45 Total: -0.06 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -28.46 -8.30 -36.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601076441.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.673 kcal
(2) G-P(sol) polarization free energy of solvation -28.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.429 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds