Wall clock time and date at job start Tue Mar 31 2020 12:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 120.00429 * 2 1 4 4 H 1.48500 * 109.47230 * 270.00334 * 3 2 1 5 5 H 1.48500 * 109.46896 * 29.99846 * 3 2 1 6 6 H 1.48500 * 109.47347 * 149.99805 * 3 2 1 7 7 C 1.40237 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00351 * 176.17390 * 7 2 1 9 9 C 1.41085 * 119.99824 * 356.17565 * 7 2 1 10 10 C 1.40903 * 120.09893 * 214.53858 * 9 7 2 11 11 C 1.36298 * 119.89233 * 180.02562 * 10 9 7 12 12 C 1.40049 * 120.10530 * 0.02562 * 11 10 9 13 13 C 1.47582 * 119.89646 * 179.97438 * 12 11 10 14 14 O 1.21596 * 120.00084 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99652 * 179.97438 * 13 12 11 16 16 C 1.39348 * 119.99663 * 185.53397 * 15 13 12 17 17 C 1.38156 * 123.52266 * 353.37542 * 16 15 13 18 18 C 1.33561 * 115.09602 * 179.97438 * 17 16 15 19 19 S 1.70554 * 111.22526 * 0.02562 * 18 17 16 20 20 C 1.37597 * 123.51810 * 173.37200 * 16 15 13 21 21 C 1.41457 * 125.48708 * 359.96593 * 20 16 15 22 22 O 1.21709 * 120.00024 * 0.02562 * 21 20 16 23 23 O 1.34975 * 119.99950 * 180.02562 * 21 20 16 24 24 C 1.40046 * 120.20424 * 0.25538 * 12 11 10 25 25 C 1.36303 * 120.10206 * 359.44228 * 24 12 11 26 26 H 0.96994 * 119.99635 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.05412 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.94823 * 179.97438 * 11 10 9 29 29 H 0.96997 * 120.00009 * 5.54020 * 15 13 12 30 30 H 1.08007 * 122.45056 * 359.97438 * 17 16 15 31 31 H 1.08001 * 124.38410 * 180.26288 * 18 17 16 32 32 H 0.96694 * 113.99974 * 179.97438 * 23 21 20 33 33 H 1.07994 * 119.94872 * 179.72792 * 24 12 11 34 34 H 1.07999 * 120.04994 * 180.25087 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6526 0.7000 6 1 3.5380 1.4401 0.7001 7 6 2.0076 -1.2145 0.0005 8 1 3.0858 -1.2156 -0.0619 9 6 1.3045 -2.4349 0.0826 10 6 1.8609 -3.5255 0.7800 11 6 1.1783 -4.7027 0.8562 12 6 -0.0740 -4.8295 0.2422 13 6 -0.8090 -6.1065 0.3271 14 8 -0.3273 -7.0463 0.9298 15 7 -2.0145 -6.2307 -0.2626 16 6 -2.7597 -7.3949 -0.0864 17 6 -2.2814 -8.5157 0.5645 18 6 -3.1388 -9.5373 0.6378 19 16 -4.6206 -9.1550 -0.1151 20 6 -4.0488 -7.5482 -0.5425 21 6 -4.7943 -6.5703 -1.2416 22 8 -4.2982 -5.4859 -1.4851 23 8 -6.0560 -6.8396 -1.6386 24 6 -0.6284 -3.7502 -0.4571 25 6 0.0442 -2.5671 -0.5333 26 1 -0.4849 0.8400 0.0004 27 1 2.8272 -3.4290 1.2528 28 1 1.6041 -5.5394 1.3902 29 1 -2.3634 -5.5096 -0.8097 30 1 -1.2870 -8.5625 0.9833 31 1 -2.9230 -10.4815 1.1156 32 1 -6.4846 -6.1110 -2.1080 33 1 -1.5924 -3.8539 -0.9327 34 1 -0.3860 -1.7340 -1.0694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:08 Heat of formation + Delta-G solvation = -71.428752 kcal Electronic energy + Delta-G solvation = -22736.957769 eV Core-core repulsion = 19112.194253 eV Total energy + Delta-G solvation = -3624.763516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75994 -39.70303 -37.85152 -36.82621 -35.97716 -34.01096 -33.69111 -30.48092 -29.88980 -29.54683 -26.44303 -24.81317 -22.61477 -22.40678 -21.12372 -20.29043 -19.21394 -18.62954 -17.65839 -17.46763 -17.31521 -15.83171 -15.56881 -15.44760 -15.13397 -14.76900 -14.65265 -14.08597 -13.68708 -13.34856 -13.29362 -13.00390 -12.89032 -12.49816 -12.18359 -11.91772 -11.65480 -11.62814 -11.31937 -11.07740 -10.96269 -10.72234 -10.64561 -10.47301 -10.08789 -9.64035 -9.50098 -9.12128 -8.89505 -7.90827 -7.79896 -7.50479 -6.96355 -4.72467 0.29100 1.47052 1.86353 1.93918 2.32162 2.84754 2.93189 2.94207 2.97577 3.02809 3.22661 3.48274 3.70398 3.77090 4.49809 4.78413 5.09860 5.41928 5.46166 5.54974 5.78439 5.95082 6.08968 6.16827 6.21940 6.36704 6.69159 6.78083 6.79687 6.91461 7.04415 7.37024 7.49136 7.67949 7.78866 7.79744 7.90448 7.99853 8.34880 8.56514 8.62492 8.65799 9.91534 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.003096 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.614939 B = 9042.309640 C =10183.200401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.068 3.932 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.229 4.229 11 C -0.022 4.022 12 C -0.281 4.281 13 C 0.570 3.430 14 O -0.545 6.545 15 N -0.645 5.645 16 C 0.273 3.727 17 C -0.181 4.181 18 C -0.197 4.197 19 S 0.218 5.782 20 C -0.363 4.363 21 C 0.563 3.437 22 O -0.525 6.525 23 O -0.508 6.508 24 C -0.065 4.065 25 C -0.165 4.165 26 H 0.286 0.714 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.427 0.573 30 H 0.192 0.808 31 H 0.174 0.826 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.092 -10.958 -1.712 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.151 4.151 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.248 4.248 11 C -0.041 4.041 12 C -0.285 4.285 13 C 0.369 3.631 14 O -0.427 6.427 15 N -0.290 5.290 16 C 0.155 3.845 17 C -0.214 4.214 18 C -0.336 4.336 19 S 0.483 5.517 20 C -0.485 4.485 21 C 0.411 3.589 22 O -0.418 6.418 23 O -0.319 6.319 24 C -0.085 4.085 25 C -0.184 4.184 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.271 0.729 30 H 0.209 0.791 31 H 0.191 0.809 32 H 0.267 0.733 33 H 0.112 0.888 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.948 -12.155 -1.374 15.767 hybrid contribution 1.063 2.310 -0.237 2.554 sum -8.886 -9.845 -1.611 13.359 Atomic orbital electron populations 1.69669 1.07689 1.29849 1.33638 1.26116 0.95051 1.01885 0.92085 0.86062 0.80298 0.79531 0.79488 1.19072 1.19910 1.18311 1.19848 0.95282 0.90135 1.41709 0.89698 1.17906 0.91750 0.91772 0.86023 1.20850 1.01889 0.94928 1.07175 1.20365 0.92319 0.96458 0.94994 1.18762 0.99670 0.92863 1.17246 1.18947 0.78864 0.88956 0.76364 1.90439 1.67740 1.40564 1.43922 1.43907 1.18704 1.16827 1.49587 1.17445 0.87988 0.87909 0.91135 1.20978 1.05254 0.90859 1.04296 1.25450 0.99076 1.04194 1.04849 1.82914 1.12749 1.04688 1.51311 1.21691 0.99200 1.02972 1.24601 1.17849 0.79845 0.85267 0.75987 1.90872 1.70441 1.24821 1.55659 1.85019 1.27903 1.47824 1.71111 1.20655 0.97424 0.93504 0.96868 1.21277 0.97512 0.96378 1.03248 0.90271 0.87961 0.87727 0.72914 0.79143 0.80886 0.73265 0.88773 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.83 10.59 55.56 0.59 -18.24 16 2 C 0.07 1.58 5.42 -17.31 -0.09 1.49 16 3 Si 0.92 17.32 29.56 -169.99 -5.03 12.29 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.80 9.03 -37.75 -0.34 -11.14 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.55 16 9 C 0.13 3.22 5.55 -106.80 -0.59 2.63 16 10 C -0.23 -5.34 9.73 -39.27 -0.38 -5.73 16 11 C -0.02 -0.50 9.52 -39.60 -0.38 -0.88 16 12 C -0.28 -6.33 5.89 -104.73 -0.62 -6.95 16 13 C 0.57 11.97 7.72 -12.45 -0.10 11.87 16 14 O -0.55 -11.73 13.09 5.28 0.07 -11.66 16 15 N -0.65 -12.14 5.27 -11.39 -0.06 -12.20 16 16 C 0.27 4.58 6.63 -84.71 -0.56 4.01 16 17 C -0.18 -2.74 9.09 -41.25 -0.37 -3.12 16 18 C -0.20 -2.25 10.89 29.09 0.32 -1.93 16 19 S 0.22 2.40 22.82 -107.50 -2.45 -0.06 16 20 C -0.36 -5.36 6.28 -38.59 -0.24 -5.61 16 21 C 0.56 8.17 8.08 31.96 0.26 8.43 16 22 O -0.53 -8.98 15.22 -19.43 -0.30 -9.27 16 23 O -0.51 -5.44 13.30 -41.25 -0.55 -5.99 16 24 C -0.07 -1.48 9.47 -39.60 -0.37 -1.86 16 25 C -0.16 -4.05 8.61 -39.27 -0.34 -4.39 16 26 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 27 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.10 2.22 7.63 -52.48 -0.40 1.82 16 29 H 0.43 8.03 4.28 -40.82 -0.17 7.85 16 30 H 0.19 3.20 5.21 -52.55 -0.27 2.93 16 31 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.41 2.57 8.98 45.56 0.41 2.98 16 33 H 0.09 1.95 6.38 -52.49 -0.34 1.62 16 34 H 0.13 3.35 6.13 -52.49 -0.32 3.03 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -28.46 313.96 -8.30 -36.76 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -1.49 Total: 16.80 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.82 Total: -13.16 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.53 Total: -30.44 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.78 Total: -26.92 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.45 Total: -0.06 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.46 -8.30 -36.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.673 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds