Wall clock time and date at job start Tue Mar 31 2020 12:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 120.00429 * 2 1 4 4 H 1.48500 * 109.47230 * 270.00334 * 3 2 1 5 5 H 1.48500 * 109.46896 * 29.99846 * 3 2 1 6 6 H 1.48500 * 109.47347 * 149.99805 * 3 2 1 7 7 C 1.40237 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00351 * 176.17390 * 7 2 1 9 9 C 1.41085 * 119.99824 * 356.17565 * 7 2 1 10 10 C 1.40903 * 120.09893 * 214.53858 * 9 7 2 11 11 C 1.36298 * 119.89233 * 180.02562 * 10 9 7 12 12 C 1.40049 * 120.10530 * 0.02562 * 11 10 9 13 13 C 1.47582 * 119.89646 * 179.97438 * 12 11 10 14 14 O 1.21596 * 120.00084 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99652 * 179.97438 * 13 12 11 16 16 C 1.39348 * 119.99663 * 185.53397 * 15 13 12 17 17 C 1.38156 * 123.52266 * 353.37542 * 16 15 13 18 18 C 1.33561 * 115.09602 * 179.97438 * 17 16 15 19 19 S 1.70554 * 111.22526 * 0.02562 * 18 17 16 20 20 C 1.37597 * 123.51810 * 173.37200 * 16 15 13 21 21 C 1.41457 * 125.48708 * 359.96593 * 20 16 15 22 22 O 1.21709 * 120.00024 * 0.02562 * 21 20 16 23 23 O 1.34975 * 119.99950 * 180.02562 * 21 20 16 24 24 C 1.40046 * 120.20424 * 0.25538 * 12 11 10 25 25 C 1.36303 * 120.10206 * 359.44228 * 24 12 11 26 26 H 0.96994 * 119.99635 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.05412 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.94823 * 179.97438 * 11 10 9 29 29 H 0.96997 * 120.00009 * 5.54020 * 15 13 12 30 30 H 1.08007 * 122.45056 * 359.97438 * 17 16 15 31 31 H 1.08001 * 124.38410 * 180.26288 * 18 17 16 32 32 H 0.96694 * 113.99974 * 179.97438 * 23 21 20 33 33 H 1.07994 * 119.94872 * 179.72792 * 24 12 11 34 34 H 1.07999 * 120.04994 * 180.25087 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6526 0.7000 6 1 3.5380 1.4401 0.7001 7 6 2.0076 -1.2145 0.0005 8 1 3.0858 -1.2156 -0.0619 9 6 1.3045 -2.4349 0.0826 10 6 1.8609 -3.5255 0.7800 11 6 1.1783 -4.7027 0.8562 12 6 -0.0740 -4.8295 0.2422 13 6 -0.8090 -6.1065 0.3271 14 8 -0.3273 -7.0463 0.9298 15 7 -2.0145 -6.2307 -0.2626 16 6 -2.7597 -7.3949 -0.0864 17 6 -2.2814 -8.5157 0.5645 18 6 -3.1388 -9.5373 0.6378 19 16 -4.6206 -9.1550 -0.1151 20 6 -4.0488 -7.5482 -0.5425 21 6 -4.7943 -6.5703 -1.2416 22 8 -4.2982 -5.4859 -1.4851 23 8 -6.0560 -6.8396 -1.6386 24 6 -0.6284 -3.7502 -0.4571 25 6 0.0442 -2.5671 -0.5333 26 1 -0.4849 0.8400 0.0004 27 1 2.8272 -3.4290 1.2528 28 1 1.6041 -5.5394 1.3902 29 1 -2.3634 -5.5096 -0.8097 30 1 -1.2870 -8.5625 0.9833 31 1 -2.9230 -10.4815 1.1156 32 1 -6.4846 -6.1110 -2.1080 33 1 -1.5924 -3.8539 -0.9327 34 1 -0.3860 -1.7340 -1.0694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601076441.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:07 Heat of formation + Delta-G solvation = -88.525834 kcal Electronic energy + Delta-G solvation = -22737.699154 eV Core-core repulsion = 19112.194253 eV Total energy + Delta-G solvation = -3625.504901 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04160 -40.98590 -39.43360 -38.28134 -37.03842 -35.71208 -35.14735 -32.11741 -31.41230 -31.10765 -28.10765 -26.10995 -24.03748 -23.67005 -22.91476 -21.87323 -20.45165 -19.72685 -19.42108 -18.87101 -18.56881 -17.25885 -16.96130 -16.66568 -16.37246 -16.18867 -16.04752 -15.79518 -15.07237 -14.93939 -14.58812 -14.38734 -14.24447 -13.97022 -13.68525 -13.57669 -13.33650 -12.87010 -12.67063 -12.64997 -12.41056 -12.07173 -11.82920 -11.78110 -11.73957 -11.45723 -11.20326 -10.70476 -9.95023 -9.66933 -9.43733 -8.89984 -8.70131 -6.57766 -0.82576 0.26286 0.45403 0.84877 1.07627 1.16263 1.39691 1.40819 1.54082 1.73807 2.08375 2.15226 2.19265 2.25878 2.74644 3.57162 3.69303 3.99288 4.11279 4.22525 4.38413 4.53738 4.63926 4.87121 4.88403 5.01682 5.02595 5.11706 5.25041 5.43110 5.50698 5.55454 5.72021 5.86487 5.96816 6.16842 6.35509 6.51284 6.74205 6.81685 6.82461 7.04314 8.20543 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.003096 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.614939 B = 9042.309640 C =10183.200401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.472 4.472 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.237 4.237 11 C -0.028 4.028 12 C -0.288 4.288 13 C 0.573 3.427 14 O -0.555 6.555 15 N -0.648 5.648 16 C 0.236 3.764 17 C -0.215 4.215 18 C -0.177 4.177 19 S 0.318 5.682 20 C -0.385 4.385 21 C 0.564 3.436 22 O -0.559 6.559 23 O -0.494 6.494 24 C -0.062 4.062 25 C -0.185 4.185 26 H 0.293 0.707 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.424 0.576 30 H 0.170 0.830 31 H 0.213 0.787 32 H 0.431 0.569 33 H 0.108 0.892 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -12.559 -1.602 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.500 4.500 8 H 0.108 0.892 9 C 0.099 3.901 10 C -0.256 4.256 11 C -0.047 4.047 12 C -0.293 4.293 13 C 0.369 3.631 14 O -0.437 6.437 15 N -0.293 5.293 16 C 0.121 3.879 17 C -0.247 4.247 18 C -0.316 4.316 19 S 0.584 5.416 20 C -0.506 4.506 21 C 0.413 3.587 22 O -0.454 6.454 23 O -0.306 6.306 24 C -0.081 4.081 25 C -0.205 4.205 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.267 0.733 30 H 0.187 0.813 31 H 0.230 0.770 32 H 0.291 0.709 33 H 0.126 0.874 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.586 -13.808 -1.280 18.070 hybrid contribution 1.266 2.526 -0.300 2.841 sum -10.320 -11.282 -1.580 15.371 Atomic orbital electron populations 1.69733 1.09120 1.31145 1.33999 1.27014 0.95782 1.04965 0.90988 0.84977 0.78863 0.74877 0.79723 1.18323 1.19252 1.17902 1.20126 0.95726 0.90865 1.43267 0.89206 1.18233 0.92314 0.92759 0.86769 1.21029 1.02548 0.94860 1.07209 1.20551 0.92449 0.96654 0.95020 1.19057 0.99907 0.93718 1.16574 1.18651 0.79635 0.88169 0.76621 1.90448 1.68299 1.40555 1.44417 1.43647 1.18220 1.17887 1.49532 1.17741 0.88985 0.87774 0.93449 1.20742 1.05491 0.91911 1.06582 1.25910 0.98587 1.04392 1.02663 1.82615 1.10544 1.00464 1.47943 1.22092 0.98868 1.05509 1.24145 1.17933 0.80626 0.84677 0.75513 1.90859 1.71362 1.26241 1.56929 1.84960 1.26118 1.48717 1.70832 1.20770 0.97780 0.93024 0.96545 1.21247 0.98190 0.96718 1.04305 0.89555 0.86647 0.86463 0.73261 0.81276 0.76999 0.70859 0.87416 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.22 10.59 21.87 0.23 -39.99 16 2 C 0.03 1.36 5.42 85.36 0.46 1.83 16 3 Si 1.00 35.52 29.56 68.60 2.03 37.55 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.47 -23.77 9.03 23.45 0.21 -23.55 16 8 H 0.09 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.10 5.32 5.55 -21.28 -0.12 5.21 16 10 C -0.24 -11.40 9.73 22.47 0.22 -11.18 16 11 C -0.03 -1.28 9.52 22.26 0.21 -1.07 16 12 C -0.29 -13.40 5.89 -19.93 -0.12 -13.51 16 13 C 0.57 24.68 7.72 86.71 0.67 25.35 16 14 O -0.56 -24.40 13.09 -4.02 -0.05 -24.45 16 15 N -0.65 -24.96 5.27 -308.22 -1.62 -26.58 16 16 C 0.24 7.85 6.63 37.78 0.25 8.10 16 17 C -0.22 -6.30 9.09 21.19 0.19 -6.11 16 18 C -0.18 -3.41 10.89 66.76 0.73 -2.68 16 19 S 0.32 5.69 22.82 -56.49 -1.29 4.40 16 20 C -0.39 -10.72 6.28 22.91 0.14 -10.57 16 21 C 0.56 15.61 8.08 68.61 0.55 16.16 16 22 O -0.56 -19.10 15.22 19.15 0.29 -18.81 16 23 O -0.49 -9.23 13.30 -58.93 -0.78 -10.02 16 24 C -0.06 -2.94 9.47 22.26 0.21 -2.73 16 25 C -0.19 -9.53 8.61 22.47 0.19 -9.34 16 26 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 27 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.12 5.05 7.63 -2.91 -0.02 5.02 16 29 H 0.42 16.48 4.28 -92.71 -0.40 16.08 16 30 H 0.17 5.72 5.21 -3.93 -0.02 5.70 16 31 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.43 4.31 8.98 -74.06 -0.67 3.64 16 33 H 0.11 4.68 6.38 -2.91 -0.02 4.66 16 34 H 0.12 6.40 6.13 -2.91 -0.02 6.38 16 Total: -1.00 -64.23 313.96 2.75 -61.48 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: 0.14 Total: 40.54 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.81 Total: -24.10 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -1.39 Total: -66.57 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -0.55 Total: -53.28 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.29 Total: 4.40 kcal Total: -64.23 2.75 -61.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076441.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.046 kcal (2) G-P(sol) polarization free energy of solvation -64.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds