Wall clock time and date at job start Tue Mar 31 2020 12:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47081 * 89.99754 * 3 2 1 5 5 H 1.48498 * 109.46901 * 210.00137 * 3 2 1 6 6 H 1.48497 * 109.46696 * 329.99828 * 3 2 1 7 7 C 1.39944 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00020 * 204.04427 * 7 2 1 9 9 C 1.41389 * 120.00015 * 24.04596 * 7 2 1 10 10 C 1.40735 * 120.24758 * 31.99465 * 9 7 2 11 11 C 1.37596 * 119.75035 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24522 * 0.02869 * 11 10 9 13 13 C 1.38612 * 120.50678 * 359.97438 * 12 11 10 14 14 C 1.37647 * 120.24540 * 359.67482 * 13 12 11 15 15 S 1.76194 * 120.12990 * 180.31959 * 14 13 12 16 16 O 1.42106 * 106.40361 * 228.70646 * 15 14 13 17 17 O 1.42095 * 106.40241 * 1.62954 * 15 14 13 18 18 N 1.65603 * 107.21942 * 115.16747 * 15 14 13 19 19 C 1.46498 * 119.99863 * 297.66099 * 18 15 14 20 20 H 1.09003 * 109.47460 * 23.50425 * 19 18 15 21 21 C 1.52999 * 109.47342 * 263.50569 * 19 18 15 22 22 F 1.39904 * 109.47289 * 65.57417 * 21 19 18 23 23 C 1.50701 * 109.47352 * 143.50420 * 19 18 15 24 24 O 1.20823 * 119.99911 * 0.02562 * 23 19 18 25 25 O 1.34225 * 120.00482 * 179.97438 * 23 19 18 26 26 H 0.97000 * 119.99523 * 185.73897 * 1 2 3 27 27 H 1.08002 * 120.12390 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.87736 * 180.02562 * 11 10 9 29 29 H 1.08005 * 119.74968 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.88400 * 179.97438 * 13 12 11 31 31 H 0.96997 * 120.00318 * 117.65630 * 18 15 14 32 32 H 1.08998 * 109.47653 * 185.57539 * 21 19 18 33 33 H 1.09000 * 109.46871 * 305.57814 * 21 19 18 34 34 H 0.96697 * 117.00584 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 1.4000 5 1 3.5398 1.4402 -0.7001 6 1 1.4397 2.6526 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0178 -1.2523 0.3817 9 6 1.3931 -2.3835 -0.4979 10 6 0.4579 -2.3022 -1.5464 11 6 -0.1340 -3.4489 -2.0239 12 6 0.1875 -4.6811 -1.4756 13 6 1.1071 -4.7733 -0.4426 14 6 1.7169 -3.6401 0.0460 15 16 2.8917 -3.7617 1.3535 16 8 2.5194 -2.7880 2.3193 17 8 3.0170 -5.1451 1.6529 18 7 4.3546 -3.2807 0.7445 19 6 4.9755 -4.0321 -0.3492 20 1 4.2069 -4.5753 -0.8991 21 6 5.9891 -5.0242 0.2246 22 9 5.3191 -5.9874 0.9866 23 6 5.6784 -3.0771 -1.2792 24 8 5.6627 -1.8906 -1.0516 25 8 6.3227 -3.5446 -2.3599 26 1 -0.4849 -0.8359 0.0840 27 1 0.2057 -1.3433 -1.9746 28 1 -0.8516 -3.3889 -2.8287 29 1 -0.2822 -5.5761 -1.8563 30 1 1.3498 -5.7383 -0.0227 31 1 4.8004 -2.5015 1.1118 32 1 6.5217 -5.5125 -0.5914 33 1 6.7008 -4.4921 0.8560 34 1 6.7590 -2.8939 -2.9266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:31 Heat of formation + Delta-G solvation = -201.649671 kcal Electronic energy + Delta-G solvation = -25708.244017 eV Core-core repulsion = 21647.064474 eV Total energy + Delta-G solvation = -4061.179543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.40909 -40.35927 -37.86324 -36.43306 -36.27778 -35.16363 -34.91214 -34.07542 -30.24792 -29.68184 -29.39591 -25.36869 -24.61716 -21.88652 -21.50520 -21.20779 -19.26856 -18.33652 -17.95347 -17.49109 -16.79685 -16.40923 -15.90227 -15.87292 -15.22513 -15.03734 -14.89790 -14.54913 -14.15428 -13.93335 -13.69009 -13.34388 -12.80542 -12.67979 -12.29525 -11.94094 -11.61257 -11.54543 -11.35326 -11.27565 -11.15316 -11.14752 -11.02922 -10.97655 -10.69538 -10.54877 -10.47052 -9.87348 -9.72969 -9.24355 -9.08293 -8.28013 -7.85161 -7.48927 -4.84908 1.32303 2.08431 2.16671 2.62103 2.79138 3.09583 3.18983 3.31213 3.61834 3.89002 4.30662 4.36299 4.65251 4.66224 4.82809 4.91779 5.12032 5.25201 5.49046 5.65239 5.83124 5.91760 6.02613 6.25652 6.37426 6.58770 6.84344 7.09241 7.20427 7.24875 7.37602 7.52497 7.59965 7.78374 7.79729 7.94690 8.31613 8.54432 9.78801 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.007320 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.086531 B = 3824.312216 C = 4572.787047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.045 3.955 3 Si 1.062 2.938 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.090 0.910 9 C 0.163 3.837 10 C -0.206 4.206 11 C -0.056 4.056 12 C -0.263 4.263 13 C 0.012 3.988 14 C -0.788 4.788 15 S 2.696 3.304 16 O -0.956 6.956 17 O -0.974 6.974 18 N -1.104 6.104 19 C 0.142 3.858 20 H 0.134 0.866 21 C 0.054 3.946 22 F -0.185 7.185 23 C 0.478 3.522 24 O -0.483 6.483 25 O -0.516 6.516 26 H 0.302 0.698 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.421 0.579 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 -4.490 -4.389 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.180 4.180 3 Si 0.884 3.116 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.520 4.520 8 H 0.108 0.892 9 C 0.158 3.842 10 C -0.226 4.226 11 C -0.075 4.075 12 C -0.283 4.283 13 C -0.008 4.008 14 C -0.883 4.883 15 S 2.793 3.207 16 O -0.946 6.946 17 O -0.964 6.964 18 N -0.860 5.860 19 C 0.031 3.969 20 H 0.152 0.848 21 C -0.003 4.003 22 F -0.165 7.165 23 C 0.316 3.684 24 O -0.367 6.367 25 O -0.328 6.328 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.256 0.744 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 10.262 -3.241 -3.276 11.249 hybrid contribution 0.137 -0.726 -1.060 1.292 sum 10.399 -3.967 -4.336 11.945 Atomic orbital electron populations 1.70426 1.08231 1.34655 1.25943 1.27119 0.95499 1.04559 0.90843 0.83691 0.75988 0.73169 0.78724 1.19490 1.19254 1.19583 1.20934 1.02774 0.94042 1.34243 0.89161 1.17014 0.88717 0.90325 0.88176 1.21308 1.03748 0.97243 1.00288 1.20846 0.96316 0.93282 0.97053 1.20464 1.07142 0.96467 1.04265 1.20369 0.92231 0.95669 0.92539 1.29853 1.28977 1.00257 1.29248 1.01440 0.72121 0.72795 0.74352 1.93566 1.81076 1.61527 1.58444 1.93536 1.85985 1.33209 1.83670 1.55957 1.40386 1.42716 1.46952 1.20674 0.97720 0.90867 0.87645 0.84842 1.22321 0.93341 0.88604 0.96073 1.92960 1.82064 1.64158 1.77368 1.23162 0.76286 0.88733 0.80258 1.90783 1.56089 1.17372 1.72485 1.84489 1.65165 1.46029 1.37087 0.88407 0.87384 0.88558 0.88400 0.86968 0.74404 0.88721 0.89945 0.72783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.92 12.55 55.55 0.70 -19.22 16 2 C 0.04 1.11 4.93 -17.34 -0.09 1.03 16 3 Si 1.06 21.48 30.00 -169.99 -5.10 16.38 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.49 -12.50 7.45 -37.74 -0.28 -12.78 16 8 H 0.09 2.20 6.05 -52.48 -0.32 1.88 16 9 C 0.16 4.07 5.15 -106.82 -0.55 3.52 16 10 C -0.21 -4.94 8.02 -38.87 -0.31 -5.26 16 11 C -0.06 -1.21 10.02 -39.66 -0.40 -1.61 16 12 C -0.26 -5.52 10.05 -39.29 -0.39 -5.91 16 13 C 0.01 0.26 9.54 -39.66 -0.38 -0.12 16 14 C -0.79 -18.35 5.63 -38.87 -0.22 -18.57 16 15 S 2.70 58.02 4.88 -107.50 -0.52 57.50 16 16 O -0.96 -23.78 16.62 -57.17 -0.95 -24.73 16 17 O -0.97 -21.35 14.70 -57.17 -0.84 -22.19 16 18 N -1.10 -19.27 4.31 -5.88 -0.03 -19.30 16 19 C 0.14 2.05 3.07 -69.08 -0.21 1.84 16 20 H 0.13 1.94 7.72 -51.93 -0.40 1.54 16 21 C 0.05 0.63 7.13 37.16 0.26 0.90 16 22 F -0.18 -2.94 15.24 2.25 0.03 -2.90 16 23 C 0.48 6.47 7.69 36.01 0.28 6.74 16 24 O -0.48 -8.13 16.77 -18.75 -0.31 -8.45 16 25 O -0.52 -4.96 13.22 -39.24 -0.52 -5.48 16 26 H 0.30 8.03 6.88 -40.82 -0.28 7.75 16 27 H 0.11 2.62 6.96 -52.49 -0.37 2.26 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.11 2.25 7.32 -52.49 -0.38 1.86 16 31 H 0.42 6.88 8.11 -34.48 -0.28 6.60 16 32 H 0.09 0.81 7.98 -51.93 -0.41 0.40 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.41 2.25 9.10 45.56 0.41 2.66 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -33.26 312.66 -7.21 -40.47 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -2.09 Total: 13.42 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -2.29 Total: -30.21 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.67 Total: -38.52 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -2.62 Total: -60.84 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.03 Total: -2.90 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.10 Total: 16.38 kcal Atomic # 16 Polarization: 58.02 SS G_CDS: -0.52 Total: 57.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.26 -7.21 -40.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.185 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds