Wall clock time and date at job start Tue Mar 31 2020 12:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86807 * 120.00001 * 2 1 4 4 H 1.48496 * 109.47081 * 89.99754 * 3 2 1 5 5 H 1.48498 * 109.46901 * 210.00137 * 3 2 1 6 6 H 1.48497 * 109.46696 * 329.99828 * 3 2 1 7 7 C 1.39944 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00020 * 204.04427 * 7 2 1 9 9 C 1.41389 * 120.00015 * 24.04596 * 7 2 1 10 10 C 1.40735 * 120.24758 * 31.99465 * 9 7 2 11 11 C 1.37596 * 119.75035 * 179.97438 * 10 9 7 12 12 C 1.38653 * 120.24522 * 0.02869 * 11 10 9 13 13 C 1.38612 * 120.50678 * 359.97438 * 12 11 10 14 14 C 1.37647 * 120.24540 * 359.67482 * 13 12 11 15 15 S 1.76194 * 120.12990 * 180.31959 * 14 13 12 16 16 O 1.42106 * 106.40361 * 228.70646 * 15 14 13 17 17 O 1.42095 * 106.40241 * 1.62954 * 15 14 13 18 18 N 1.65603 * 107.21942 * 115.16747 * 15 14 13 19 19 C 1.46498 * 119.99863 * 297.66099 * 18 15 14 20 20 H 1.09003 * 109.47460 * 23.50425 * 19 18 15 21 21 C 1.52999 * 109.47342 * 263.50569 * 19 18 15 22 22 F 1.39904 * 109.47289 * 65.57417 * 21 19 18 23 23 C 1.50701 * 109.47352 * 143.50420 * 19 18 15 24 24 O 1.20823 * 119.99911 * 0.02562 * 23 19 18 25 25 O 1.34225 * 120.00482 * 179.97438 * 23 19 18 26 26 H 0.97000 * 119.99523 * 185.73897 * 1 2 3 27 27 H 1.08002 * 120.12390 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.87736 * 180.02562 * 11 10 9 29 29 H 1.08005 * 119.74968 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.88400 * 179.97438 * 13 12 11 31 31 H 0.96997 * 120.00318 * 117.65630 * 18 15 14 32 32 H 1.08998 * 109.47653 * 185.57539 * 21 19 18 33 33 H 1.09000 * 109.46871 * 305.57814 * 21 19 18 34 34 H 0.96697 * 117.00584 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 1.4000 5 1 3.5398 1.4402 -0.7001 6 1 1.4397 2.6526 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0178 -1.2523 0.3817 9 6 1.3931 -2.3835 -0.4979 10 6 0.4579 -2.3022 -1.5464 11 6 -0.1340 -3.4489 -2.0239 12 6 0.1875 -4.6811 -1.4756 13 6 1.1071 -4.7733 -0.4426 14 6 1.7169 -3.6401 0.0460 15 16 2.8917 -3.7617 1.3535 16 8 2.5194 -2.7880 2.3193 17 8 3.0170 -5.1451 1.6529 18 7 4.3546 -3.2807 0.7445 19 6 4.9755 -4.0321 -0.3492 20 1 4.2069 -4.5753 -0.8991 21 6 5.9891 -5.0242 0.2246 22 9 5.3191 -5.9874 0.9866 23 6 5.6784 -3.0771 -1.2792 24 8 5.6627 -1.8906 -1.0516 25 8 6.3227 -3.5446 -2.3599 26 1 -0.4849 -0.8359 0.0840 27 1 0.2057 -1.3433 -1.9746 28 1 -0.8516 -3.3889 -2.8287 29 1 -0.2822 -5.5761 -1.8563 30 1 1.3498 -5.7383 -0.0227 31 1 4.8004 -2.5015 1.1118 32 1 6.5217 -5.5125 -0.5914 33 1 6.7008 -4.4921 0.8560 34 1 6.7590 -2.8939 -2.9266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:30 Heat of formation + Delta-G solvation = -226.792256 kcal Electronic energy + Delta-G solvation = -25709.334281 eV Core-core repulsion = 21647.064474 eV Total energy + Delta-G solvation = -4062.269808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.50310 -41.41990 -39.64169 -38.10366 -37.38785 -36.72460 -36.42575 -35.87013 -32.02322 -31.37309 -30.70100 -27.18738 -25.62847 -23.63445 -23.08521 -22.50602 -20.73784 -20.10818 -19.22724 -18.76683 -18.20641 -17.92366 -17.14689 -17.08105 -16.63428 -16.57671 -16.09272 -16.02094 -15.79496 -15.47365 -15.10280 -14.98443 -14.48563 -14.05976 -13.91862 -13.37950 -13.19864 -13.06794 -12.94651 -12.88453 -12.84665 -12.76854 -12.56099 -12.27561 -12.01918 -11.94834 -11.86603 -11.62968 -11.30261 -11.02376 -10.59984 -10.05711 -9.66264 -9.36945 -6.72845 -0.33880 0.37352 0.83027 1.02752 1.44719 1.57804 1.72645 1.74927 2.17267 2.23919 2.53674 2.88656 3.25205 3.37046 3.61057 3.71788 3.87037 4.05875 4.23030 4.31293 4.32511 4.59484 4.64144 4.70571 4.82155 5.05768 5.28160 5.45064 5.51715 5.55987 5.65038 5.81106 5.90353 5.95750 6.13899 6.50341 6.72343 6.89742 7.87524 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.007320 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.086531 B = 3824.312216 C = 4572.787047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.010 3.990 3 Si 1.102 2.898 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.146 3.854 10 C -0.232 4.232 11 C -0.052 4.052 12 C -0.255 4.255 13 C 0.000 4.000 14 C -0.800 4.800 15 S 2.718 3.282 16 O -0.996 6.996 17 O -0.978 6.978 18 N -1.099 6.099 19 C 0.129 3.871 20 H 0.132 0.868 21 C 0.052 3.948 22 F -0.209 7.209 23 C 0.491 3.509 24 O -0.521 6.521 25 O -0.497 6.497 26 H 0.286 0.714 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.425 0.575 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 -5.739 -5.696 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.209 4.209 3 Si 0.919 3.081 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.555 4.555 8 H 0.108 0.892 9 C 0.142 3.858 10 C -0.252 4.252 11 C -0.070 4.070 12 C -0.275 4.275 13 C -0.020 4.020 14 C -0.894 4.894 15 S 2.814 3.186 16 O -0.986 6.986 17 O -0.968 6.968 18 N -0.859 5.859 19 C 0.019 3.981 20 H 0.149 0.851 21 C -0.005 4.005 22 F -0.190 7.190 23 C 0.331 3.669 24 O -0.409 6.409 25 O -0.311 6.311 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.262 0.738 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 11.604 -4.518 -4.624 13.284 hybrid contribution -0.229 -0.584 -0.765 0.989 sum 11.376 -5.102 -5.389 13.582 Atomic orbital electron populations 1.70532 1.08818 1.33438 1.29001 1.28329 0.95618 1.07389 0.89561 0.83225 0.75384 0.70223 0.79289 1.18662 1.18283 1.18566 1.21071 1.03164 0.94897 1.36343 0.89190 1.17288 0.89081 0.90982 0.88479 1.21350 1.05099 0.97779 1.00996 1.21233 0.95879 0.92669 0.97232 1.20935 1.05871 0.97532 1.03150 1.20726 0.92298 0.96013 0.92941 1.30181 1.29785 1.00290 1.29109 1.00624 0.72356 0.72137 0.73514 1.93510 1.82321 1.62673 1.60122 1.93525 1.86303 1.33310 1.83687 1.55507 1.38994 1.43317 1.48048 1.20996 0.98586 0.91279 0.87284 0.85091 1.22616 0.92524 0.87847 0.97487 1.92906 1.82724 1.65138 1.78209 1.22828 0.75813 0.87673 0.80622 1.90784 1.57745 1.18774 1.73561 1.84426 1.64379 1.46374 1.35946 0.90186 0.88674 0.85397 0.84759 0.85093 0.73787 0.84688 0.87741 0.70234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.58 12.55 21.83 0.27 -42.31 16 2 C 0.01 0.51 4.93 85.26 0.42 0.93 16 3 Si 1.10 43.89 30.00 68.60 2.06 45.95 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.53 -27.48 7.45 23.46 0.17 -27.31 16 8 H 0.09 4.53 6.05 -2.91 -0.02 4.51 16 9 C 0.15 7.44 5.15 -21.29 -0.11 7.33 16 10 C -0.23 -11.26 8.02 22.73 0.18 -11.08 16 11 C -0.05 -2.14 10.02 22.22 0.22 -1.92 16 12 C -0.25 -10.01 10.05 22.46 0.23 -9.78 16 13 C 0.00 -0.01 9.54 22.22 0.21 0.21 16 14 C -0.80 -37.18 5.63 22.73 0.13 -37.05 16 15 S 2.72 117.25 4.88 -56.49 -0.28 116.97 16 16 O -1.00 -50.75 16.62 -128.00 -2.13 -52.88 16 17 O -0.98 -42.20 14.70 -128.00 -1.88 -44.08 16 18 N -1.10 -37.91 4.31 -172.52 -0.74 -38.65 16 19 C 0.13 3.50 3.07 44.25 0.14 3.64 16 20 H 0.13 3.62 7.72 -2.39 -0.02 3.60 16 21 C 0.05 1.08 7.13 71.98 0.51 1.59 16 22 F -0.21 -6.23 15.24 44.97 0.69 -5.55 16 23 C 0.49 12.34 7.69 71.24 0.55 12.89 16 24 O -0.52 -17.03 16.77 21.97 0.37 -16.66 16 25 O -0.50 -7.97 13.22 -51.37 -0.68 -8.64 16 26 H 0.29 15.91 6.88 -92.71 -0.64 15.27 16 27 H 0.10 4.77 6.96 -2.91 -0.02 4.75 16 28 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.13 4.95 7.32 -2.91 -0.02 4.93 16 31 H 0.43 13.94 8.11 -96.74 -0.78 13.16 16 32 H 0.14 1.75 7.98 -2.39 -0.02 1.73 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.43 3.28 9.10 -74.06 -0.67 2.61 16 Total: -1.00 -73.21 312.66 0.19 -73.01 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.14 Total: 33.39 kcal Atomic # 6 Polarization: -63.20 SS G_CDS: 2.65 Total: -60.55 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -0.47 Total: -80.96 kcal Atomic # 8 Polarization: -117.95 SS G_CDS: -4.32 Total: -122.27 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.69 Total: -5.55 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.06 Total: 45.95 kcal Atomic # 16 Polarization: 117.25 SS G_CDS: -0.28 Total: 116.97 kcal Total: -73.21 0.19 -73.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.778 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds