Wall clock time and date at job start Tue Mar 31 2020 11:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47350 * 2 1 4 4 C 1.50693 * 109.47060 * 239.99500 * 2 1 3 5 5 H 1.08002 * 120.00230 * 274.66512 * 4 2 1 6 6 C 1.37873 * 119.99856 * 94.95092 * 4 2 1 7 7 N 1.31516 * 120.00441 * 183.06612 * 6 4 2 8 8 Si 1.86798 * 120.00033 * 3.06435 * 6 4 2 9 9 H 1.48501 * 109.47007 * 85.14527 * 8 6 4 10 10 H 1.48500 * 109.47279 * 205.14353 * 8 6 4 11 11 H 1.48501 * 109.47160 * 325.14565 * 8 6 4 12 12 N 1.46910 * 109.46839 * 119.99556 * 2 1 3 13 13 C 1.46897 * 111.00124 * 275.00309 * 12 2 1 14 14 H 1.08996 * 109.47077 * 34.99591 * 13 12 2 15 15 C 1.50709 * 109.46677 * 275.00118 * 13 12 2 16 16 O 1.20819 * 120.00146 * 0.02562 * 15 13 12 17 17 O 1.34227 * 119.99493 * 180.02562 * 15 13 12 18 18 C 1.50695 * 109.47145 * 155.00310 * 13 12 2 19 19 C 1.38266 * 119.97812 * 220.00075 * 18 13 12 20 20 C 1.38210 * 120.03750 * 180.02562 * 19 18 13 21 21 C 1.38345 * 119.99801 * 359.97027 * 20 19 18 22 22 Cl 1.73603 * 120.01748 * 180.02562 * 21 20 19 23 23 C 1.38438 * 119.96471 * 0.02562 * 21 20 19 24 24 Cl 1.73606 * 120.02220 * 179.97438 * 23 21 20 25 25 C 1.38201 * 119.98299 * 39.71885 * 18 13 12 26 26 H 1.08997 * 109.47027 * 185.48112 * 1 2 3 27 27 H 1.09000 * 109.46722 * 305.48125 * 1 2 3 28 28 H 1.08999 * 109.46668 * 65.47830 * 1 2 3 29 29 H 0.96998 * 120.00839 * 179.97438 * 7 6 4 30 30 H 1.00899 * 110.99369 * 151.04211 * 12 2 1 31 31 H 0.96702 * 116.99441 * 179.97438 * 17 15 13 32 32 H 1.08001 * 119.98382 * 359.96910 * 19 18 13 33 33 H 1.07998 * 119.99904 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.99915 * 0.02562 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1407 -1.7851 -1.2271 6 6 2.3593 0.0118 -2.3583 7 7 2.7401 -0.6123 -3.4515 8 14 2.2614 1.8771 -2.3338 9 1 3.5264 2.4320 -1.7889 10 1 2.0550 2.3801 -3.7157 11 1 1.1250 2.3020 -1.4775 12 7 2.0197 -0.6925 1.1996 13 6 2.0824 0.2227 2.3470 14 1 1.2576 0.9330 2.2907 15 6 3.3912 0.9696 2.3228 16 8 4.1894 0.7613 1.4401 17 8 3.6699 1.8662 3.2819 18 6 1.9786 -0.5675 3.6260 19 6 1.2287 -0.0799 4.6803 20 6 1.1330 -0.8033 5.8541 21 6 1.7873 -2.0163 5.9742 22 17 1.6670 -2.9258 7.4481 23 6 2.5381 -2.5046 4.9185 24 17 3.3603 -4.0263 5.0679 25 6 2.6281 -1.7818 3.7423 26 1 -0.3633 -1.0229 0.0982 27 1 -0.3633 0.5965 0.8369 28 1 -0.3632 0.4265 -0.9350 29 1 2.9697 -0.1042 -4.2452 30 1 2.9173 -1.1205 1.0288 31 1 4.5219 2.3200 3.2244 32 1 0.7181 0.8672 4.5870 33 1 0.5475 -0.4217 6.6774 34 1 3.2103 -2.1640 2.9168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:39 Heat of formation + Delta-G solvation = -78.452970 kcal Electronic energy + Delta-G solvation = -21986.687002 eV Core-core repulsion = 18357.142338 eV Total energy + Delta-G solvation = -3629.544665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58320 -39.32217 -36.96209 -36.61766 -36.38128 -35.51149 -33.05061 -31.49974 -31.05395 -29.03036 -26.32537 -25.10490 -23.11450 -22.75716 -20.85084 -19.75597 -18.05699 -17.65982 -17.17011 -16.64829 -16.23149 -15.74660 -15.17443 -14.87968 -14.28041 -14.06544 -13.88998 -13.73654 -13.48950 -12.73543 -12.54892 -12.32897 -11.99882 -11.89002 -11.75997 -11.53848 -11.39307 -11.24369 -11.11968 -11.01984 -10.82653 -10.76839 -10.62485 -10.43200 -9.84765 -9.16048 -9.05330 -8.74132 -8.66201 -7.97567 -6.15754 -4.17400 0.77536 0.98882 1.71711 2.08445 2.33876 3.06298 3.23285 3.29537 3.31425 3.42798 4.34147 4.42483 4.48430 4.73258 4.94669 5.07158 5.14119 5.24033 5.30546 5.45926 5.62891 5.79270 5.87518 6.18867 6.25986 6.41606 6.51438 6.59780 6.62132 6.71401 7.25932 7.46665 7.60115 7.99505 8.07494 8.49420 8.91651 9.46962 10.97038 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.003860 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.192053 B = 7251.467092 C = 7625.176200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.179 3.821 3 H 0.008 0.992 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.647 5.647 13 C 0.132 3.868 14 H 0.123 0.877 15 C 0.444 3.556 16 O -0.490 6.490 17 O -0.520 6.520 18 C -0.045 4.045 19 C -0.085 4.085 20 C -0.101 4.101 21 C -0.032 4.032 22 Cl -0.057 7.057 23 C -0.031 4.031 24 Cl -0.051 7.051 25 C -0.071 4.071 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.356 0.644 31 H 0.402 0.598 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 1.573 20.853 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.071 3.929 3 H 0.026 0.974 4 C -0.555 4.555 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.281 5.281 13 C 0.019 3.981 14 H 0.140 0.860 15 C 0.282 3.718 16 O -0.375 6.375 17 O -0.331 6.331 18 C -0.046 4.046 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.060 4.060 22 Cl -0.028 7.028 23 C -0.058 4.058 24 Cl -0.022 7.022 25 C -0.090 4.090 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.179 0.821 31 H 0.260 0.740 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.577 0.845 20.696 20.873 hybrid contribution 1.439 1.659 -0.346 2.223 sum -1.138 2.504 20.350 20.535 Atomic orbital electron populations 1.21922 0.97538 1.00677 0.98571 1.19679 0.92449 0.92824 0.87923 0.97384 1.20904 1.44048 0.95891 0.94656 0.90007 1.24962 0.94008 0.98037 0.95396 1.69876 1.44961 1.35855 1.02227 0.86938 0.79044 0.86792 0.77273 1.20129 1.21295 1.19116 1.61323 1.33530 1.28333 1.04899 1.20475 0.92021 0.93316 0.92311 0.85963 1.25073 0.90502 0.77677 0.78569 1.90821 1.48516 1.62946 1.35206 1.84586 1.43640 1.53167 1.51708 1.19517 0.96669 0.94314 0.94097 1.21075 0.97747 0.99925 0.91609 1.20940 0.99589 0.92563 0.98898 1.20764 1.01680 0.95116 0.88400 1.98377 1.97075 1.73939 1.33436 1.20705 0.99646 0.90495 0.94997 1.98389 1.77087 1.28823 1.97935 1.20936 0.98962 0.93518 0.95544 0.92577 0.96273 0.93237 0.92466 0.82103 0.73960 0.84140 0.83975 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.35 37.16 0.35 -2.24 16 2 C 0.18 3.99 1.87 -68.86 -0.13 3.86 16 3 H 0.01 0.20 4.87 -51.93 -0.25 -0.06 16 4 C -0.52 -14.00 8.84 -34.45 -0.30 -14.31 16 5 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 8 Si 0.87 21.39 26.95 -169.99 -4.58 16.81 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.14 6.88 56.52 0.39 -5.75 16 12 N -0.65 -12.26 5.35 -103.39 -0.55 -12.82 16 13 C 0.13 2.02 2.52 -70.02 -0.18 1.85 16 14 H 0.12 1.72 7.02 -51.93 -0.36 1.36 16 15 C 0.44 7.11 7.31 36.01 0.26 7.37 16 16 O -0.49 -9.86 16.40 -18.74 -0.31 -10.17 16 17 O -0.52 -6.33 13.34 -39.25 -0.52 -6.85 16 18 C -0.04 -0.58 4.88 -104.63 -0.51 -1.09 16 19 C -0.08 -0.89 9.67 -39.58 -0.38 -1.27 16 20 C -0.10 -1.00 9.83 -39.55 -0.39 -1.39 16 21 C -0.03 -0.37 6.32 -39.47 -0.25 -0.62 16 22 Cl -0.06 -0.60 27.96 -51.86 -1.45 -2.05 16 23 C -0.03 -0.39 6.32 -39.47 -0.25 -0.64 16 24 Cl -0.05 -0.64 27.96 -51.86 -1.45 -2.09 16 25 C -0.07 -0.95 9.10 -39.55 -0.36 -1.31 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.02 0.32 7.50 -51.93 -0.39 -0.07 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.36 7.24 6.71 -39.29 -0.26 6.98 16 31 H 0.40 3.36 9.10 45.56 0.41 3.78 16 32 H 0.14 1.15 8.04 -52.49 -0.42 0.73 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.15 2.08 7.24 -52.49 -0.38 1.70 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -31.31 325.69 -7.92 -39.23 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.50 Total: 6.72 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.24 Total: -7.65 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.22 Total: -38.85 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.83 Total: -17.02 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.58 Total: 16.81 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -2.90 Total: -4.14 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.31 -7.92 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.227 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds