Wall clock time and date at job start Tue Mar 31 2020 11:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47350 * 2 1 4 4 C 1.50693 * 109.47060 * 239.99500 * 2 1 3 5 5 H 1.08002 * 120.00230 * 274.66512 * 4 2 1 6 6 C 1.37873 * 119.99856 * 94.95092 * 4 2 1 7 7 N 1.31516 * 120.00441 * 183.06612 * 6 4 2 8 8 Si 1.86798 * 120.00033 * 3.06435 * 6 4 2 9 9 H 1.48501 * 109.47007 * 85.14527 * 8 6 4 10 10 H 1.48500 * 109.47279 * 205.14353 * 8 6 4 11 11 H 1.48501 * 109.47160 * 325.14565 * 8 6 4 12 12 N 1.46910 * 109.46839 * 119.99556 * 2 1 3 13 13 C 1.46897 * 111.00124 * 275.00309 * 12 2 1 14 14 H 1.08996 * 109.47077 * 34.99591 * 13 12 2 15 15 C 1.50709 * 109.46677 * 275.00118 * 13 12 2 16 16 O 1.20819 * 120.00146 * 0.02562 * 15 13 12 17 17 O 1.34227 * 119.99493 * 180.02562 * 15 13 12 18 18 C 1.50695 * 109.47145 * 155.00310 * 13 12 2 19 19 C 1.38266 * 119.97812 * 220.00075 * 18 13 12 20 20 C 1.38210 * 120.03750 * 180.02562 * 19 18 13 21 21 C 1.38345 * 119.99801 * 359.97027 * 20 19 18 22 22 Cl 1.73603 * 120.01748 * 180.02562 * 21 20 19 23 23 C 1.38438 * 119.96471 * 0.02562 * 21 20 19 24 24 Cl 1.73606 * 120.02220 * 179.97438 * 23 21 20 25 25 C 1.38201 * 119.98299 * 39.71885 * 18 13 12 26 26 H 1.08997 * 109.47027 * 185.48112 * 1 2 3 27 27 H 1.09000 * 109.46722 * 305.48125 * 1 2 3 28 28 H 1.08999 * 109.46668 * 65.47830 * 1 2 3 29 29 H 0.96998 * 120.00839 * 179.97438 * 7 6 4 30 30 H 1.00899 * 110.99369 * 151.04211 * 12 2 1 31 31 H 0.96702 * 116.99441 * 179.97438 * 17 15 13 32 32 H 1.08001 * 119.98382 * 359.96910 * 19 18 13 33 33 H 1.07998 * 119.99904 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.99915 * 0.02562 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1407 -1.7851 -1.2271 6 6 2.3593 0.0118 -2.3583 7 7 2.7401 -0.6123 -3.4515 8 14 2.2614 1.8771 -2.3338 9 1 3.5264 2.4320 -1.7889 10 1 2.0550 2.3801 -3.7157 11 1 1.1250 2.3020 -1.4775 12 7 2.0197 -0.6925 1.1996 13 6 2.0824 0.2227 2.3470 14 1 1.2576 0.9330 2.2907 15 6 3.3912 0.9696 2.3228 16 8 4.1894 0.7613 1.4401 17 8 3.6699 1.8662 3.2819 18 6 1.9786 -0.5675 3.6260 19 6 1.2287 -0.0799 4.6803 20 6 1.1330 -0.8033 5.8541 21 6 1.7873 -2.0163 5.9742 22 17 1.6670 -2.9258 7.4481 23 6 2.5381 -2.5046 4.9185 24 17 3.3603 -4.0263 5.0679 25 6 2.6281 -1.7818 3.7423 26 1 -0.3633 -1.0229 0.0982 27 1 -0.3633 0.5965 0.8369 28 1 -0.3632 0.4265 -0.9350 29 1 2.9697 -0.1042 -4.2452 30 1 2.9173 -1.1205 1.0288 31 1 4.5219 2.3200 3.2244 32 1 0.7181 0.8672 4.5870 33 1 0.5475 -0.4217 6.6774 34 1 3.2103 -2.1640 2.9168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:39 Heat of formation + Delta-G solvation = -99.675461 kcal Electronic energy + Delta-G solvation = -21987.607278 eV Core-core repulsion = 18357.142338 eV Total energy + Delta-G solvation = -3630.464941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77481 -40.31318 -38.13258 -37.53295 -37.47292 -36.86778 -34.77295 -33.09829 -31.94580 -30.36217 -27.68502 -27.00208 -24.03747 -23.79919 -22.16308 -21.29523 -19.32029 -19.20045 -18.38320 -18.06196 -17.30309 -16.80790 -16.57995 -16.22764 -15.64508 -15.34984 -15.04254 -14.81144 -14.67321 -14.54899 -14.11285 -13.56699 -13.08599 -13.02725 -12.90113 -12.81835 -12.67844 -12.59541 -12.55528 -12.43644 -12.26011 -12.00402 -11.85908 -11.83135 -11.72013 -11.08811 -10.80164 -9.95828 -9.68391 -9.50196 -8.32035 -6.36867 -0.14453 0.09963 0.82005 1.08618 1.20603 1.28519 1.31553 1.39289 2.00029 2.30009 2.46281 2.99162 3.30469 3.51526 3.63920 3.97512 4.12265 4.21931 4.32040 4.39122 4.47162 4.74776 4.85066 4.89077 4.95409 5.02781 5.10456 5.35057 5.47170 5.52748 5.57922 5.71589 5.88062 6.29168 6.50368 6.73689 6.92150 7.30996 8.84822 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020224 B = 0.003860 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.192053 B = 7251.467092 C = 7625.176200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.183 3.817 3 H 0.004 0.996 4 C -0.516 4.516 5 H 0.038 0.962 6 C 0.019 3.981 7 N -0.944 5.944 8 Si 0.933 3.067 9 H -0.282 1.282 10 H -0.284 1.284 11 H -0.235 1.235 12 N -0.648 5.648 13 C 0.132 3.868 14 H 0.146 0.854 15 C 0.451 3.549 16 O -0.541 6.541 17 O -0.502 6.502 18 C -0.055 4.055 19 C -0.071 4.071 20 C -0.089 4.089 21 C -0.036 4.036 22 Cl -0.050 7.050 23 C -0.043 4.043 24 Cl -0.059 7.059 25 C -0.086 4.086 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.266 0.734 30 H 0.344 0.656 31 H 0.422 0.578 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 4.084 23.881 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 H 0.022 0.978 4 C -0.554 4.554 5 H 0.056 0.944 6 C -0.179 4.179 7 N -0.584 5.584 8 Si 0.758 3.242 9 H -0.208 1.208 10 H -0.210 1.210 11 H -0.158 1.158 12 N -0.280 5.280 13 C 0.019 3.981 14 H 0.163 0.837 15 C 0.292 3.708 16 O -0.430 6.430 17 O -0.313 6.313 18 C -0.056 4.056 19 C -0.090 4.090 20 C -0.108 4.108 21 C -0.063 4.063 22 Cl -0.021 7.021 23 C -0.071 4.071 24 Cl -0.030 7.030 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.283 0.717 32 H 0.192 0.808 33 H 0.194 0.806 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.410 3.373 23.787 24.426 hybrid contribution 2.042 0.798 -1.117 2.461 sum -2.367 4.172 22.670 23.172 Atomic orbital electron populations 1.21811 0.95371 1.01234 0.99821 1.19540 0.93941 0.91892 0.87146 0.97787 1.21198 1.43088 0.94272 0.96867 0.94373 1.25811 0.94071 1.03053 0.95009 1.70033 1.47383 1.37822 1.03182 0.85949 0.79646 0.80792 0.77827 1.20817 1.21016 1.15813 1.61175 1.32889 1.29136 1.04794 1.20552 0.92442 0.93404 0.91654 0.83674 1.25090 0.90150 0.77501 0.78069 1.90820 1.50158 1.64647 1.37409 1.84510 1.44968 1.52040 1.49813 1.19368 0.98213 0.94085 0.93975 1.21400 0.96252 1.00845 0.90475 1.21328 0.98578 0.91347 0.99537 1.20978 1.01335 0.95772 0.88252 1.98384 1.96987 1.73960 1.32761 1.20754 1.00488 0.90465 0.95382 1.98382 1.77354 1.29288 1.97937 1.20834 0.99732 0.94443 0.95533 0.93062 0.92105 0.94218 0.92543 0.83551 0.71685 0.80785 0.80624 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 9.35 71.98 0.67 -4.03 16 2 C 0.18 8.03 1.87 44.17 0.08 8.11 16 3 H 0.00 0.20 4.87 -2.39 -0.01 0.18 16 4 C -0.52 -28.86 8.84 25.60 0.23 -28.63 16 5 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 6 C 0.02 1.09 5.47 84.65 0.46 1.55 16 7 N -0.94 -59.07 13.96 21.45 0.30 -58.78 16 8 Si 0.93 44.15 26.95 68.60 1.85 45.99 16 9 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.24 -9.84 6.88 99.48 0.68 -9.15 16 12 N -0.65 -24.37 5.35 -481.02 -2.57 -26.94 16 13 C 0.13 3.74 2.52 43.42 0.11 3.85 16 14 H 0.15 3.43 7.02 -2.39 -0.02 3.41 16 15 C 0.45 13.65 7.31 71.24 0.52 14.17 16 16 O -0.54 -21.76 16.40 21.98 0.36 -21.39 16 17 O -0.50 -10.54 13.34 -51.39 -0.69 -11.23 16 18 C -0.06 -1.30 4.88 -19.87 -0.10 -1.40 16 19 C -0.07 -1.17 9.67 22.27 0.22 -0.95 16 20 C -0.09 -1.37 9.83 22.29 0.22 -1.15 16 21 C -0.04 -0.72 6.32 22.34 0.14 -0.58 16 22 Cl -0.05 -0.94 27.96 -2.72 -0.08 -1.01 16 23 C -0.04 -1.06 6.32 22.34 0.14 -0.92 16 24 Cl -0.06 -1.45 27.96 -2.72 -0.08 -1.52 16 25 C -0.09 -2.28 9.10 22.29 0.20 -2.08 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.79 7.50 -2.39 -0.02 1.78 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.34 14.55 6.71 -89.69 -0.60 13.95 16 31 H 0.42 5.75 9.10 -74.06 -0.67 5.08 16 32 H 0.17 1.71 8.04 -2.91 -0.02 1.69 16 33 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.13 3.79 7.24 -2.91 -0.02 3.77 16 Total: -1.00 -71.23 325.69 1.87 -69.36 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.13 Total: 17.59 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 2.90 Total: -12.06 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.27 Total: -85.72 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.32 Total: -32.62 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.85 Total: 45.99 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.15 Total: -2.54 kcal Total: -71.23 1.87 -69.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.318 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds