Wall clock time and date at job start Tue Mar 31 2020 11:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47324 * 59.99539 * 8 6 4 10 10 H 1.48494 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99915 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46900 * 110.99922 * 85.00294 * 12 2 1 14 14 H 1.08998 * 109.47161 * 324.99397 * 13 12 2 15 15 C 1.50701 * 109.47085 * 85.00022 * 13 12 2 16 16 O 1.20829 * 119.99922 * 359.97438 * 15 13 12 17 17 O 1.34231 * 119.99984 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.46612 * 204.99573 * 13 12 2 19 19 C 1.38260 * 119.98684 * 319.72853 * 18 13 12 20 20 C 1.38204 * 120.03974 * 179.72589 * 19 18 13 21 21 C 1.38344 * 119.99944 * 0.54915 * 20 19 18 22 22 Cl 1.73605 * 120.02037 * 179.74893 * 21 20 19 23 23 C 1.38447 * 119.96250 * 359.72150 * 21 20 19 24 24 Cl 1.73599 * 120.02058 * 180.02562 * 23 21 20 25 25 C 1.38213 * 119.97754 * 140.00310 * 18 13 12 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 1.00893 * 111.00120 * 321.04546 * 12 2 1 31 31 H 0.96698 * 117.00012 * 180.02562 * 17 15 13 32 32 H 1.08002 * 119.97803 * 359.97429 * 19 18 13 33 33 H 1.07999 * 119.99851 * 180.25013 * 20 19 18 34 34 H 1.08002 * 119.99930 * 0.02562 * 25 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0079 10 1 1.8277 -0.4192 5.2205 11 1 1.8279 -2.5197 4.0082 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.2577 0.9329 -2.2907 15 6 3.3913 0.9694 -2.3227 16 8 4.1895 0.7611 -1.4399 17 8 3.6701 1.8661 -3.2819 18 6 1.9787 -0.5677 -3.6258 19 6 2.6378 -1.7771 -3.7462 20 6 2.5388 -2.5055 -4.9165 21 6 1.7891 -2.0192 -5.9726 22 17 1.6696 -2.9307 -7.4453 23 6 1.1336 -0.8055 -5.8541 24 17 0.1919 -0.1941 -7.1782 25 6 1.2293 -0.0804 -4.6799 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1619 3.4844 30 1 1.4496 -1.4979 -1.4100 31 1 4.5221 2.3198 -3.2244 32 1 3.2271 -2.1548 -2.9236 33 1 3.0506 -3.4521 -5.0083 34 1 0.7187 0.8668 -4.5870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:44 Heat of formation + Delta-G solvation = -92.733667 kcal Electronic energy + Delta-G solvation = -21804.834179 eV Core-core repulsion = 18174.670257 eV Total energy + Delta-G solvation = -3630.163922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58768 -40.32470 -38.16426 -37.56146 -37.39924 -36.79390 -34.84786 -32.76020 -31.98821 -29.85564 -27.46049 -27.10640 -24.11070 -23.82442 -22.38799 -21.53776 -19.17834 -18.69868 -18.16383 -17.54739 -17.25272 -16.74820 -16.59625 -16.16648 -15.75065 -15.28316 -15.08883 -14.84230 -14.48004 -14.28141 -13.96978 -13.62058 -13.04782 -12.94452 -12.91440 -12.81131 -12.70023 -12.56770 -12.41182 -12.39339 -12.13199 -12.06413 -11.91485 -11.81281 -11.51224 -11.06434 -10.45735 -10.02142 -9.73038 -9.18926 -8.08036 -6.16780 -0.22113 0.02787 0.77570 1.11215 1.33049 1.44280 1.46546 1.53466 2.01320 2.36879 2.48225 3.21685 3.32981 3.49069 3.63568 4.03016 4.10283 4.14927 4.34392 4.45698 4.67060 4.73925 4.78021 4.88832 4.97297 5.05248 5.24537 5.39497 5.48104 5.68634 5.72010 5.80091 6.24177 6.52933 6.67580 6.93511 7.13130 7.51365 8.97731 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.003403 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.309278 B = 8227.032464 C = 8423.269289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.223 3.777 3 H -0.002 1.002 4 C -0.507 4.507 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.662 5.662 13 C 0.143 3.857 14 H 0.091 0.909 15 C 0.481 3.519 16 O -0.520 6.520 17 O -0.511 6.511 18 C -0.074 4.074 19 C -0.080 4.080 20 C -0.092 4.092 21 C -0.031 4.031 22 Cl -0.046 7.046 23 C -0.038 4.038 24 Cl -0.046 7.046 25 C -0.075 4.075 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.260 0.740 30 H 0.352 0.648 31 H 0.424 0.576 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 -3.399 -20.483 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.115 3.885 3 H 0.016 0.984 4 C -0.546 4.546 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.296 5.296 13 C 0.031 3.969 14 H 0.109 0.891 15 C 0.321 3.679 16 O -0.407 6.407 17 O -0.324 6.324 18 C -0.075 4.075 19 C -0.099 4.099 20 C -0.110 4.110 21 C -0.058 4.058 22 Cl -0.017 7.017 23 C -0.065 4.065 24 Cl -0.017 7.017 25 C -0.094 4.094 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.285 0.715 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.538 -3.495 -20.210 20.517 hybrid contribution -0.138 0.347 0.800 0.882 sum 0.400 -3.149 -19.410 19.668 Atomic orbital electron populations 1.22280 0.99143 0.99911 1.00588 1.18931 0.90192 0.92458 0.86873 0.98376 1.21322 1.29993 1.12403 0.90842 0.92736 1.25640 0.95578 0.95926 1.01716 1.69979 1.38193 1.24180 1.23945 0.85635 0.78364 0.78951 0.78776 1.20582 1.21088 1.19262 1.60255 1.58899 1.08815 1.01616 1.19733 0.92087 0.94825 0.90281 0.89129 1.23533 0.88945 0.77256 0.78120 1.90756 1.49525 1.63726 1.36647 1.84464 1.45134 1.52495 1.50317 1.19443 0.98849 0.95756 0.93448 1.21295 0.97469 0.93238 0.97904 1.21236 0.97900 1.01385 0.90493 1.20951 1.01292 0.93053 0.90549 1.98389 1.97026 1.73060 1.33206 1.20696 0.99507 0.94812 0.91503 1.98388 1.70650 1.87075 1.45581 1.20976 0.98192 1.00319 0.89946 0.94838 0.94244 0.91869 0.93091 0.82651 0.71505 0.83648 0.81537 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.14 8.92 71.98 0.64 -6.50 16 2 C 0.22 10.83 2.21 44.17 0.10 10.92 16 3 H 0.00 -0.09 7.64 -2.39 -0.02 -0.11 16 4 C -0.51 -27.84 8.84 25.60 0.23 -27.61 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.66 -25.64 4.96 -481.03 -2.39 -28.03 16 13 C 0.14 4.54 2.54 43.42 0.11 4.65 16 14 H 0.09 2.82 6.97 -2.39 -0.02 2.81 16 15 C 0.48 16.44 7.35 71.24 0.52 16.96 16 16 O -0.52 -22.67 17.02 21.95 0.37 -22.29 16 17 O -0.51 -12.80 13.34 -51.43 -0.69 -13.49 16 18 C -0.07 -1.85 4.63 -19.86 -0.09 -1.94 16 19 C -0.08 -1.86 9.00 22.27 0.20 -1.66 16 20 C -0.09 -1.75 9.83 22.29 0.22 -1.53 16 21 C -0.03 -0.62 6.32 22.35 0.14 -0.48 16 22 Cl -0.05 -0.85 27.96 -2.72 -0.08 -0.92 16 23 C -0.04 -0.79 6.32 22.34 0.14 -0.65 16 24 Cl -0.05 -0.90 27.96 -2.72 -0.08 -0.98 16 25 C -0.08 -1.64 9.45 22.29 0.21 -1.43 16 26 H 0.03 1.27 7.43 -2.39 -0.02 1.25 16 27 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 28 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.35 12.28 7.74 -89.70 -0.69 11.59 16 31 H 0.42 7.05 9.10 -74.06 -0.67 6.37 16 32 H 0.15 3.60 7.72 -2.91 -0.02 3.58 16 33 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.16 3.00 8.04 -2.91 -0.02 2.97 16 Total: -1.00 -65.84 327.19 2.09 -63.75 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -0.20 Total: 16.52 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 2.87 Total: -8.30 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.14 Total: -80.56 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.31 Total: -35.78 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.15 Total: -1.90 kcal Total: -65.84 2.09 -63.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.983 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds