Wall clock time and date at job start Tue Mar 31 2020 11:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47441 * 2 1 4 4 C 1.50701 * 109.47519 * 120.00336 * 2 1 3 5 5 H 1.07998 * 120.00011 * 25.26078 * 4 2 1 6 6 C 1.37878 * 119.99677 * 205.26389 * 4 2 1 7 7 N 1.31505 * 120.00272 * 358.78074 * 6 4 2 8 8 Si 1.86804 * 119.99469 * 178.78149 * 6 4 2 9 9 H 1.48502 * 109.46987 * 269.99802 * 8 6 4 10 10 H 1.48497 * 109.47426 * 29.99918 * 8 6 4 11 11 H 1.48497 * 109.47020 * 150.00294 * 8 6 4 12 12 N 1.46908 * 109.46844 * 240.00212 * 2 1 3 13 13 C 1.46899 * 110.99914 * 85.00026 * 12 2 1 14 14 H 1.08994 * 109.47308 * 34.99909 * 13 12 2 15 15 C 1.50706 * 109.46791 * 274.99768 * 13 12 2 16 16 O 1.20818 * 120.00125 * 0.02562 * 15 13 12 17 17 O 1.34223 * 119.99699 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46708 * 155.00111 * 13 12 2 19 19 C 1.38243 * 120.00498 * 24.72025 * 18 13 12 20 20 C 1.38224 * 120.03939 * 179.76685 * 19 18 13 21 21 C 1.38248 * 120.03514 * 0.50813 * 20 19 18 22 22 C 1.38298 * 120.00282 * 359.74976 * 21 20 19 23 23 Cl 1.73603 * 120.01952 * 179.97438 * 22 21 20 24 24 C 1.38314 * 119.99403 * 204.99576 * 18 13 12 25 25 Cl 1.73590 * 120.02153 * 359.95639 * 24 18 13 26 26 H 1.08998 * 109.47431 * 51.54803 * 1 2 3 27 27 H 1.09004 * 109.47341 * 171.55134 * 1 2 3 28 28 H 1.09006 * 109.46820 * 291.54588 * 1 2 3 29 29 H 0.97002 * 120.00529 * 353.53567 * 7 6 4 30 30 H 1.00902 * 110.99865 * 321.04070 * 12 2 1 31 31 H 0.96705 * 117.00219 * 180.02562 * 17 15 13 32 32 H 1.08004 * 119.97846 * 0.02825 * 19 18 13 33 33 H 1.08002 * 119.98277 * 180.23240 * 20 19 18 34 34 H 1.08008 * 119.99731 * 179.71910 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4149 -1.4517 1.7159 6 6 3.2803 -0.4141 1.7363 7 7 4.0418 0.4711 1.1313 8 14 3.8892 -1.2700 3.2809 9 1 3.4915 -0.4803 4.4740 10 1 3.2912 -2.6268 3.3636 11 1 5.3691 -1.3834 3.2333 12 7 2.0195 -0.6925 -1.1995 13 6 2.0823 0.2226 -2.3469 14 1 2.3647 1.2176 -2.0031 15 6 0.7321 0.2858 -3.0134 16 8 -0.1880 -0.3643 -2.5771 17 8 0.5518 1.0644 -4.0918 18 6 3.1063 -0.2776 -3.3329 19 6 3.4339 -1.6202 -3.3682 20 6 4.3695 -2.0806 -4.2755 21 6 4.9865 -1.1973 -5.1417 22 6 4.6639 0.1470 -5.1042 23 17 5.4389 1.2568 -6.1913 24 6 3.7226 0.6076 -4.1988 25 17 3.3161 2.2945 -4.1509 26 1 -0.3634 0.6390 -0.8048 27 1 -0.3634 -1.0165 -0.1510 28 1 -0.3633 0.3774 0.9559 29 1 3.7672 0.8462 0.2800 30 1 1.4494 -1.4980 -1.4101 31 1 -0.3318 1.0726 -4.4847 32 1 2.9554 -2.3105 -2.6892 33 1 4.6220 -3.1303 -4.3047 34 1 5.7208 -1.5570 -5.8473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:48 Heat of formation + Delta-G solvation = -75.593552 kcal Electronic energy + Delta-G solvation = -22567.333169 eV Core-core repulsion = 18937.912498 eV Total energy + Delta-G solvation = -3629.420671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51043 -39.16598 -36.77434 -36.40849 -36.30699 -35.40588 -33.12257 -31.26487 -30.54036 -28.75990 -26.02283 -24.47301 -22.76795 -22.63071 -20.96354 -20.28343 -17.97443 -17.55454 -16.95150 -16.44173 -15.97737 -15.77341 -15.14298 -14.24118 -14.09631 -13.95151 -13.74638 -13.55273 -13.08315 -12.90182 -12.38140 -12.11170 -11.80881 -11.76678 -11.51868 -11.43786 -11.32757 -11.16651 -10.94875 -10.73248 -10.72714 -10.59918 -10.37733 -10.11663 -9.71790 -8.78964 -8.64747 -8.62167 -8.42326 -7.62299 -6.33082 -4.09913 1.05517 1.09344 1.89802 2.31077 2.41838 3.24024 3.44328 3.48050 3.61960 3.64045 4.47710 4.54313 4.82115 4.93910 5.09195 5.26689 5.38829 5.47064 5.51201 5.68371 5.76864 5.96624 6.27381 6.29296 6.38609 6.49550 6.57930 6.63964 6.68044 6.85773 7.13208 7.81996 8.09581 8.16679 8.31503 8.49203 8.88147 9.68150 11.04967 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.005171 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.248068 B = 5413.673641 C = 6242.789856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.185 3.815 3 H 0.041 0.959 4 C -0.580 4.580 5 H 0.049 0.951 6 C 0.033 3.967 7 N -0.897 5.897 8 Si 1.069 2.931 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.286 1.286 12 N -0.637 5.637 13 C 0.128 3.872 14 H 0.123 0.877 15 C 0.451 3.549 16 O -0.504 6.504 17 O -0.511 6.511 18 C -0.047 4.047 19 C -0.068 4.068 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.037 4.037 23 Cl -0.059 7.059 24 C -0.014 4.014 25 Cl -0.041 7.041 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.274 0.726 30 H 0.335 0.665 31 H 0.397 0.603 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -0.953 -14.829 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.080 3.920 3 H 0.059 0.941 4 C -0.619 4.619 5 H 0.067 0.933 6 C -0.174 4.174 7 N -0.532 5.532 8 Si 0.898 3.102 9 H -0.216 1.216 10 H -0.215 1.215 11 H -0.211 1.211 12 N -0.270 5.270 13 C 0.015 3.985 14 H 0.140 0.860 15 C 0.290 3.710 16 O -0.392 6.392 17 O -0.320 6.320 18 C -0.049 4.049 19 C -0.086 4.086 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.064 4.064 23 Cl -0.030 7.030 24 C -0.042 4.042 25 Cl -0.012 7.012 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.254 0.746 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.895 -0.827 -13.353 13.512 hybrid contribution -2.757 0.373 -1.690 3.255 sum -0.862 -0.454 -15.043 15.074 Atomic orbital electron populations 1.22460 0.99482 1.00306 0.99142 1.19603 0.89326 0.95290 0.87743 0.94109 1.21802 1.03859 1.26606 1.09659 0.93265 1.25775 0.93317 0.95415 1.02936 1.70697 1.39675 1.25588 1.17212 0.83553 0.76128 0.75583 0.74921 1.21595 1.21514 1.21130 1.62198 1.56976 1.07601 1.00203 1.20582 0.85775 1.01429 0.90728 0.85970 1.25169 0.92785 0.75482 0.77533 1.90709 1.43680 1.42406 1.62356 1.84725 1.39588 1.64264 1.43465 1.19385 0.97570 0.93143 0.94776 1.21197 0.96246 0.94626 0.96529 1.21200 0.96408 1.00123 0.95044 1.20996 1.00498 0.90351 1.00253 1.20622 0.98300 0.91625 0.95858 1.98366 1.79753 1.62464 1.62417 1.20598 0.98434 0.86946 0.98256 1.98379 1.92646 1.12645 1.97494 0.95320 0.93660 0.93638 0.91500 0.84426 0.74579 0.83607 0.84438 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 7.72 37.15 0.29 -3.10 16 2 C 0.19 4.43 2.15 -68.86 -0.15 4.28 16 3 H 0.04 1.06 6.21 -51.93 -0.32 0.74 16 4 C -0.58 -15.56 8.63 -34.44 -0.30 -15.85 16 5 H 0.05 1.33 7.81 -52.49 -0.41 0.93 16 6 C 0.03 0.91 5.46 -17.82 -0.10 0.81 16 7 N -0.90 -26.00 13.58 55.43 0.75 -25.25 16 8 Si 1.07 24.60 29.90 -169.99 -5.08 19.51 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.64 -13.38 5.00 -103.39 -0.52 -13.90 16 13 C 0.13 2.34 2.23 -70.01 -0.16 2.19 16 14 H 0.12 2.41 6.41 -51.93 -0.33 2.07 16 15 C 0.45 7.58 6.91 36.01 0.25 7.83 16 16 O -0.50 -9.45 13.22 -18.74 -0.25 -9.70 16 17 O -0.51 -6.93 12.04 -39.24 -0.47 -7.40 16 18 C -0.05 -0.77 4.98 -104.59 -0.52 -1.30 16 19 C -0.07 -1.02 9.32 -39.58 -0.37 -1.38 16 20 C -0.11 -1.34 10.04 -39.58 -0.40 -1.74 16 21 C -0.10 -1.23 9.83 -39.56 -0.39 -1.62 16 22 C -0.04 -0.51 6.32 -39.47 -0.25 -0.76 16 23 Cl -0.06 -0.75 27.96 -51.86 -1.45 -2.20 16 24 C -0.01 -0.22 6.26 -39.46 -0.25 -0.47 16 25 Cl -0.04 -0.63 25.18 -51.86 -1.31 -1.93 16 26 H 0.03 0.59 5.82 -51.93 -0.30 0.29 16 27 H 0.04 0.98 7.81 -51.93 -0.41 0.58 16 28 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 29 H 0.27 7.90 6.82 -40.82 -0.28 7.62 16 30 H 0.34 6.84 6.83 -39.29 -0.27 6.57 16 31 H 0.40 3.63 9.10 45.56 0.41 4.05 16 32 H 0.15 2.20 6.88 -52.48 -0.36 1.84 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -30.25 316.00 -8.23 -38.48 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -2.33 Total: 8.73 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.34 Total: -11.11 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.24 Total: -39.15 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.72 Total: -17.10 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -2.76 Total: -4.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.25 -8.23 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.113 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds