Wall clock time and date at job start Tue Mar 31 2020 11:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47441 * 2 1 4 4 C 1.50701 * 109.47519 * 120.00336 * 2 1 3 5 5 H 1.07998 * 120.00011 * 25.26078 * 4 2 1 6 6 C 1.37878 * 119.99677 * 205.26389 * 4 2 1 7 7 N 1.31505 * 120.00272 * 358.78074 * 6 4 2 8 8 Si 1.86804 * 119.99469 * 178.78149 * 6 4 2 9 9 H 1.48502 * 109.46987 * 269.99802 * 8 6 4 10 10 H 1.48497 * 109.47426 * 29.99918 * 8 6 4 11 11 H 1.48497 * 109.47020 * 150.00294 * 8 6 4 12 12 N 1.46908 * 109.46844 * 240.00212 * 2 1 3 13 13 C 1.46899 * 110.99914 * 85.00026 * 12 2 1 14 14 H 1.08994 * 109.47308 * 34.99909 * 13 12 2 15 15 C 1.50706 * 109.46791 * 274.99768 * 13 12 2 16 16 O 1.20818 * 120.00125 * 0.02562 * 15 13 12 17 17 O 1.34223 * 119.99699 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46708 * 155.00111 * 13 12 2 19 19 C 1.38243 * 120.00498 * 24.72025 * 18 13 12 20 20 C 1.38224 * 120.03939 * 179.76685 * 19 18 13 21 21 C 1.38248 * 120.03514 * 0.50813 * 20 19 18 22 22 C 1.38298 * 120.00282 * 359.74976 * 21 20 19 23 23 Cl 1.73603 * 120.01952 * 179.97438 * 22 21 20 24 24 C 1.38314 * 119.99403 * 204.99576 * 18 13 12 25 25 Cl 1.73590 * 120.02153 * 359.95639 * 24 18 13 26 26 H 1.08998 * 109.47431 * 51.54803 * 1 2 3 27 27 H 1.09004 * 109.47341 * 171.55134 * 1 2 3 28 28 H 1.09006 * 109.46820 * 291.54588 * 1 2 3 29 29 H 0.97002 * 120.00529 * 353.53567 * 7 6 4 30 30 H 1.00902 * 110.99865 * 321.04070 * 12 2 1 31 31 H 0.96705 * 117.00219 * 180.02562 * 17 15 13 32 32 H 1.08004 * 119.97846 * 0.02825 * 19 18 13 33 33 H 1.08002 * 119.98277 * 180.23240 * 20 19 18 34 34 H 1.08008 * 119.99731 * 179.71910 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4149 -1.4517 1.7159 6 6 3.2803 -0.4141 1.7363 7 7 4.0418 0.4711 1.1313 8 14 3.8892 -1.2700 3.2809 9 1 3.4915 -0.4803 4.4740 10 1 3.2912 -2.6268 3.3636 11 1 5.3691 -1.3834 3.2333 12 7 2.0195 -0.6925 -1.1995 13 6 2.0823 0.2226 -2.3469 14 1 2.3647 1.2176 -2.0031 15 6 0.7321 0.2858 -3.0134 16 8 -0.1880 -0.3643 -2.5771 17 8 0.5518 1.0644 -4.0918 18 6 3.1063 -0.2776 -3.3329 19 6 3.4339 -1.6202 -3.3682 20 6 4.3695 -2.0806 -4.2755 21 6 4.9865 -1.1973 -5.1417 22 6 4.6639 0.1470 -5.1042 23 17 5.4389 1.2568 -6.1913 24 6 3.7226 0.6076 -4.1988 25 17 3.3161 2.2945 -4.1509 26 1 -0.3634 0.6390 -0.8048 27 1 -0.3634 -1.0165 -0.1510 28 1 -0.3633 0.3774 0.9559 29 1 3.7672 0.8462 0.2800 30 1 1.4494 -1.4980 -1.4101 31 1 -0.3318 1.0726 -4.4847 32 1 2.9554 -2.3105 -2.6892 33 1 4.6220 -3.1303 -4.3047 34 1 5.7208 -1.5570 -5.8473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:47 Heat of formation + Delta-G solvation = -94.535990 kcal Electronic energy + Delta-G solvation = -22568.154575 eV Core-core repulsion = 18937.912498 eV Total energy + Delta-G solvation = -3630.242077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.85352 -40.31166 -38.19517 -37.54889 -37.47270 -36.86231 -34.80389 -32.94388 -31.64143 -30.25404 -27.50924 -26.51028 -23.94295 -23.80320 -22.68224 -21.71643 -19.25651 -19.19679 -18.31105 -17.94833 -17.31594 -16.94053 -16.34121 -15.78028 -15.60962 -15.28914 -15.10152 -14.98195 -14.70054 -14.34366 -13.98178 -13.69994 -13.11942 -13.02394 -12.93200 -12.81908 -12.64080 -12.54974 -12.41877 -12.22843 -12.04226 -11.94980 -11.88643 -11.78457 -11.52960 -10.66599 -10.49106 -9.85689 -9.71809 -9.32906 -8.48241 -6.25739 -0.04237 -0.00540 0.79488 1.06799 1.19782 1.59297 1.66844 1.84567 2.01565 2.48275 2.63246 3.05231 3.39138 3.63720 3.85277 3.97838 4.06254 4.24742 4.31677 4.37202 4.42644 4.60433 4.67713 4.73211 4.94243 4.97972 5.20666 5.26280 5.32830 5.50257 5.61777 5.95332 6.23208 6.35670 6.57686 6.73621 6.92273 7.59621 8.89722 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.005171 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.248068 B = 5413.673641 C = 6242.789856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.190 3.810 3 H 0.014 0.986 4 C -0.591 4.591 5 H 0.042 0.958 6 C -0.013 4.013 7 N -0.924 5.924 8 Si 1.114 2.886 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.642 5.642 13 C 0.132 3.868 14 H 0.103 0.897 15 C 0.462 3.538 16 O -0.526 6.526 17 O -0.500 6.500 18 C -0.068 4.068 19 C -0.084 4.084 20 C -0.097 4.097 21 C -0.091 4.091 22 C -0.044 4.044 23 Cl -0.049 7.049 24 C -0.029 4.029 25 Cl -0.048 7.048 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.262 0.738 30 H 0.338 0.662 31 H 0.420 0.580 32 H 0.139 0.861 33 H 0.174 0.826 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -2.197 -16.092 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.083 3.917 3 H 0.032 0.968 4 C -0.630 4.630 5 H 0.061 0.939 6 C -0.214 4.214 7 N -0.560 5.560 8 Si 0.937 3.063 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.274 5.274 13 C 0.019 3.981 14 H 0.120 0.880 15 C 0.302 3.698 16 O -0.415 6.415 17 O -0.312 6.312 18 C -0.070 4.070 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.072 4.072 23 Cl -0.020 7.020 24 C -0.057 4.057 25 Cl -0.019 7.019 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.281 0.719 32 H 0.157 0.843 33 H 0.191 0.809 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.411 -2.058 -14.654 14.992 hybrid contribution -2.957 0.794 -1.461 3.393 sum -0.547 -1.265 -16.115 16.174 Atomic orbital electron populations 1.22305 0.98048 1.00419 0.99214 1.19386 0.90301 0.93621 0.88349 0.96803 1.22075 1.03774 1.26226 1.10961 0.93935 1.27022 0.93732 0.95354 1.05288 1.70805 1.40479 1.27364 1.17368 0.82970 0.75535 0.75520 0.72259 1.20436 1.19864 1.21336 1.61770 1.57042 1.07962 1.00603 1.20311 0.87423 0.99768 0.90567 0.87967 1.24656 0.91778 0.75389 0.77953 1.90699 1.44045 1.43503 1.63298 1.84647 1.41467 1.62902 1.42156 1.19277 0.98195 0.94180 0.95333 1.21309 0.97443 0.93920 0.97559 1.21577 0.94586 1.01932 0.93383 1.21435 1.00151 0.89300 1.00064 1.20836 0.97953 0.92711 0.95683 1.98369 1.79382 1.62366 1.61849 1.20682 0.99388 0.86559 0.99081 1.98368 1.92800 1.13151 1.97568 0.94449 0.93627 0.94066 0.92730 0.84127 0.71888 0.84282 0.80868 0.80921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 7.72 71.98 0.56 -5.66 16 2 C 0.19 9.30 2.15 44.16 0.09 9.40 16 3 H 0.01 0.76 6.21 -2.39 -0.01 0.74 16 4 C -0.59 -32.19 8.63 25.60 0.22 -31.96 16 5 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 6 C -0.01 -0.69 5.46 84.66 0.46 -0.23 16 7 N -0.92 -54.72 13.58 21.45 0.29 -54.43 16 8 Si 1.11 49.51 29.90 68.60 2.05 51.56 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.64 -27.51 5.00 -481.03 -2.40 -29.92 16 13 C 0.13 4.93 2.23 43.43 0.10 5.03 16 14 H 0.10 4.21 6.41 -2.39 -0.02 4.20 16 15 C 0.46 15.42 6.91 71.24 0.49 15.91 16 16 O -0.53 -19.49 13.22 21.99 0.29 -19.20 16 17 O -0.50 -13.04 12.04 -51.35 -0.62 -13.66 16 18 C -0.07 -2.24 4.98 -19.84 -0.10 -2.34 16 19 C -0.08 -2.43 9.32 22.27 0.21 -2.23 16 20 C -0.10 -2.09 10.04 22.27 0.22 -1.86 16 21 C -0.09 -1.90 9.83 22.29 0.22 -1.68 16 22 C -0.04 -1.15 6.32 22.34 0.14 -1.01 16 23 Cl -0.05 -1.14 27.96 -2.72 -0.08 -1.22 16 24 C -0.03 -0.89 6.26 22.35 0.14 -0.75 16 25 Cl -0.05 -1.47 25.18 -2.72 -0.07 -1.54 16 26 H 0.04 1.55 5.82 -2.39 -0.01 1.54 16 27 H 0.04 1.98 7.81 -2.39 -0.02 1.96 16 28 H 0.04 1.80 8.12 -2.38 -0.02 1.78 16 29 H 0.26 15.72 6.82 -92.71 -0.63 15.09 16 30 H 0.34 14.01 6.83 -89.69 -0.61 13.40 16 31 H 0.42 6.91 9.10 -74.05 -0.67 6.24 16 32 H 0.14 4.16 6.88 -2.91 -0.02 4.14 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -65.68 316.00 2.25 -63.43 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.03 Total: 22.37 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 2.76 Total: -17.38 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.11 Total: -84.35 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.33 Total: -32.86 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.56 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.14 Total: -2.76 kcal Total: -65.68 2.25 -63.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.109 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds