Wall clock time and date at job start Tue Mar 31 2020 11:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47065 * 2 1 4 4 C 1.50703 * 109.46933 * 240.00201 * 2 1 3 5 5 H 1.08004 * 119.99580 * 245.46388 * 4 2 1 6 6 C 1.37878 * 120.00016 * 65.46378 * 4 2 1 7 7 N 1.31508 * 119.99951 * 9.54431 * 6 4 2 8 8 Si 1.86797 * 119.99856 * 189.54276 * 6 4 2 9 9 H 1.48504 * 109.47239 * 84.99515 * 8 6 4 10 10 H 1.48497 * 109.47275 * 204.99507 * 8 6 4 11 11 H 1.48501 * 109.47338 * 324.99686 * 8 6 4 12 12 N 1.46897 * 109.47098 * 120.00477 * 2 1 3 13 13 C 1.46902 * 110.99981 * 274.99887 * 12 2 1 14 14 H 1.09003 * 109.47049 * 35.00294 * 13 12 2 15 15 C 1.50698 * 109.47168 * 274.99939 * 13 12 2 16 16 O 1.20827 * 119.99623 * 0.02562 * 15 13 12 17 17 O 1.34224 * 120.00278 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47452 * 154.99772 * 13 12 2 19 19 C 1.38251 * 119.99779 * 24.99900 * 18 13 12 20 20 C 1.38222 * 120.03965 * 179.97438 * 19 18 13 21 21 C 1.38248 * 120.03804 * 0.02562 * 20 19 18 22 22 C 1.38304 * 119.99831 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.01926 * 180.02562 * 22 21 20 24 24 C 1.38302 * 120.00439 * 204.72886 * 18 13 12 25 25 Cl 1.73598 * 120.01457 * 359.97438 * 24 18 13 26 26 H 1.09002 * 109.47210 * 183.74018 * 1 2 3 27 27 H 1.08998 * 109.47210 * 303.74413 * 1 2 3 28 28 H 1.09010 * 109.47270 * 63.74178 * 1 2 3 29 29 H 0.97000 * 120.00225 * 180.02562 * 7 6 4 30 30 H 1.00897 * 111.00141 * 151.04080 * 12 2 1 31 31 H 0.96695 * 117.00136 * 179.97438 * 17 15 13 32 32 H 1.08001 * 119.98399 * 0.02562 * 19 18 13 33 33 H 1.08001 * 119.98348 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.00227 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1763 -1.1778 -4.0102 9 1 1.0245 -2.0609 -4.3244 10 1 2.4230 -0.2610 -5.1521 11 1 3.3849 -2.0068 -3.7710 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.3911 0.9693 2.3228 16 8 4.1893 0.7610 1.4400 17 8 3.6696 1.8666 3.2814 18 6 1.9785 -0.5678 3.6258 19 6 2.3588 -1.8968 3.6500 20 6 2.2643 -2.6222 4.8227 21 6 1.7890 -2.0199 5.9728 22 6 1.4082 -0.6905 5.9503 23 17 0.8119 0.0666 7.3943 24 6 1.5081 0.0379 4.7767 25 17 1.0378 1.7087 4.7487 26 1 -0.3634 -1.0255 0.0670 27 1 -0.3633 0.5708 0.8545 28 1 -0.3634 0.4547 -0.9217 29 1 1.1315 1.4106 -3.4723 30 1 2.9172 -1.1206 1.0286 31 1 4.5215 2.3202 3.2240 32 1 2.7306 -2.3682 2.7523 33 1 2.5620 -3.6603 4.8407 34 1 1.7159 -2.5872 6.8889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:51 Heat of formation + Delta-G solvation = -76.021144 kcal Electronic energy + Delta-G solvation = -22227.187214 eV Core-core repulsion = 18597.748001 eV Total energy + Delta-G solvation = -3629.439213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43416 -39.19851 -36.77365 -36.44425 -36.26232 -35.36778 -33.18778 -31.28095 -30.63961 -28.62242 -26.22252 -25.00996 -22.86217 -22.67045 -20.87848 -19.70907 -17.92824 -17.52415 -16.93411 -16.20556 -16.03523 -15.65198 -15.07164 -14.76631 -14.20055 -14.05592 -13.90516 -13.52104 -13.24062 -12.53702 -12.48893 -11.91724 -11.82942 -11.75975 -11.42505 -11.36023 -11.23931 -11.03879 -10.96379 -10.81732 -10.65937 -10.59255 -10.36090 -10.33028 -10.08198 -8.99488 -8.82452 -8.73544 -8.51558 -7.76955 -6.08382 -4.10185 0.94119 0.97869 1.80559 2.21882 2.51825 3.22241 3.30605 3.36591 3.39220 3.56440 4.35372 4.44856 4.76593 4.88891 5.00633 5.18401 5.26771 5.31786 5.40336 5.64065 5.66192 5.86638 6.18205 6.29284 6.53799 6.67795 6.77006 6.96995 6.97970 7.20570 7.70440 7.71873 8.00253 8.07048 8.19628 8.45694 8.94725 9.53784 11.01279 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.003980 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.315180 B = 7033.124045 C = 7314.379270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.209 3.791 3 H 0.015 0.985 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.652 5.652 13 C 0.134 3.866 14 H 0.126 0.874 15 C 0.451 3.549 16 O -0.495 6.495 17 O -0.513 6.513 18 C -0.049 4.049 19 C -0.071 4.071 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.036 4.036 23 Cl -0.058 7.058 24 C -0.016 4.016 25 Cl -0.038 7.038 26 H 0.038 0.962 27 H 0.009 0.991 28 H 0.067 0.933 29 H 0.262 0.738 30 H 0.348 0.652 31 H 0.399 0.601 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -2.797 18.537 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.103 3.897 3 H 0.032 0.968 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.285 5.285 13 C 0.020 3.980 14 H 0.143 0.857 15 C 0.290 3.710 16 O -0.381 6.381 17 O -0.323 6.323 18 C -0.051 4.051 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.064 4.064 23 Cl -0.029 7.029 24 C -0.044 4.044 25 Cl -0.009 7.009 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.169 0.831 31 H 0.257 0.743 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.198 -2.943 18.429 18.664 hybrid contribution 1.352 0.663 -1.084 1.855 sum 1.550 -2.280 17.346 17.564 Atomic orbital electron populations 1.21718 0.97813 0.99233 0.99362 1.19229 0.92089 0.93392 0.85026 0.96755 1.21062 1.36079 1.08233 0.90189 0.92012 1.24883 0.95142 0.94603 0.99062 1.69961 1.44773 1.13906 1.23942 0.86553 0.78737 0.79994 0.82371 1.20484 1.21389 1.19916 1.61242 1.32527 1.28871 1.05824 1.20372 0.92549 0.93338 0.91722 0.85668 1.24856 0.90064 0.77603 0.78487 1.90777 1.48581 1.63440 1.35275 1.84674 1.43274 1.52935 1.51422 1.19401 0.98798 0.94756 0.92135 1.21224 0.96465 0.92465 0.98750 1.21216 0.99138 1.00548 0.91811 1.21018 0.99167 0.92100 0.99799 1.20642 1.04457 0.93848 0.87453 1.98373 1.86555 1.81909 1.36017 1.20612 1.02986 0.87317 0.93467 1.98392 1.89938 1.14091 1.98474 0.94258 0.97165 0.91403 0.92839 0.83127 0.74321 0.83469 0.84366 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 9.26 37.16 0.34 -2.54 16 2 C 0.21 5.13 2.11 -68.86 -0.15 4.99 16 3 H 0.01 0.41 7.58 -51.93 -0.39 0.01 16 4 C -0.52 -13.95 8.48 -34.44 -0.29 -14.25 16 5 H 0.06 1.64 7.69 -52.48 -0.40 1.24 16 6 C 0.07 1.81 5.17 -17.82 -0.09 1.71 16 7 N -0.89 -25.38 12.16 55.43 0.67 -24.70 16 8 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.65 -13.11 4.90 -103.40 -0.51 -13.62 16 13 C 0.13 2.35 2.04 -70.02 -0.14 2.20 16 14 H 0.13 2.30 6.14 -51.93 -0.32 1.99 16 15 C 0.45 7.98 7.31 36.00 0.26 8.24 16 16 O -0.49 -10.45 16.40 -18.75 -0.31 -10.76 16 17 O -0.51 -7.19 11.99 -39.24 -0.47 -7.66 16 18 C -0.05 -0.73 4.98 -104.60 -0.52 -1.25 16 19 C -0.07 -0.92 9.32 -39.58 -0.37 -1.29 16 20 C -0.11 -1.12 10.04 -39.58 -0.40 -1.52 16 21 C -0.10 -1.05 9.83 -39.55 -0.39 -1.43 16 22 C -0.04 -0.45 6.32 -39.47 -0.25 -0.69 16 23 Cl -0.06 -0.65 27.96 -51.86 -1.45 -2.10 16 24 C -0.02 -0.22 6.25 -39.47 -0.25 -0.46 16 25 Cl -0.04 -0.54 25.14 -51.86 -1.30 -1.84 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.01 0.20 7.47 -51.93 -0.39 -0.19 16 28 H 0.07 1.74 6.83 -51.92 -0.35 1.39 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.35 7.11 6.70 -39.29 -0.26 6.85 16 31 H 0.40 3.93 9.10 45.56 0.41 4.35 16 32 H 0.15 1.91 6.89 -52.49 -0.36 1.55 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -30.52 321.52 -8.25 -38.78 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -2.47 Total: 7.13 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.24 Total: -6.29 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.17 Total: -38.32 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.78 Total: -18.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -2.75 Total: -3.94 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.52 -8.25 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.246 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds