Wall clock time and date at job start Tue Mar 31 2020 11:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47065 * 2 1 4 4 C 1.50703 * 109.46933 * 240.00201 * 2 1 3 5 5 H 1.08004 * 119.99580 * 245.46388 * 4 2 1 6 6 C 1.37878 * 120.00016 * 65.46378 * 4 2 1 7 7 N 1.31508 * 119.99951 * 9.54431 * 6 4 2 8 8 Si 1.86797 * 119.99856 * 189.54276 * 6 4 2 9 9 H 1.48504 * 109.47239 * 84.99515 * 8 6 4 10 10 H 1.48497 * 109.47275 * 204.99507 * 8 6 4 11 11 H 1.48501 * 109.47338 * 324.99686 * 8 6 4 12 12 N 1.46897 * 109.47098 * 120.00477 * 2 1 3 13 13 C 1.46902 * 110.99981 * 274.99887 * 12 2 1 14 14 H 1.09003 * 109.47049 * 35.00294 * 13 12 2 15 15 C 1.50698 * 109.47168 * 274.99939 * 13 12 2 16 16 O 1.20827 * 119.99623 * 0.02562 * 15 13 12 17 17 O 1.34224 * 120.00278 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47452 * 154.99772 * 13 12 2 19 19 C 1.38251 * 119.99779 * 24.99900 * 18 13 12 20 20 C 1.38222 * 120.03965 * 179.97438 * 19 18 13 21 21 C 1.38248 * 120.03804 * 0.02562 * 20 19 18 22 22 C 1.38304 * 119.99831 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.01926 * 180.02562 * 22 21 20 24 24 C 1.38302 * 120.00439 * 204.72886 * 18 13 12 25 25 Cl 1.73598 * 120.01457 * 359.97438 * 24 18 13 26 26 H 1.09002 * 109.47210 * 183.74018 * 1 2 3 27 27 H 1.08998 * 109.47210 * 303.74413 * 1 2 3 28 28 H 1.09010 * 109.47270 * 63.74178 * 1 2 3 29 29 H 0.97000 * 120.00225 * 180.02562 * 7 6 4 30 30 H 1.00897 * 111.00141 * 151.04080 * 12 2 1 31 31 H 0.96695 * 117.00136 * 179.97438 * 17 15 13 32 32 H 1.08001 * 119.98399 * 0.02562 * 19 18 13 33 33 H 1.08001 * 119.98348 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.00227 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0356 -2.5935 8 14 2.1763 -1.1778 -4.0102 9 1 1.0245 -2.0609 -4.3244 10 1 2.4230 -0.2610 -5.1521 11 1 3.3849 -2.0068 -3.7710 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.3911 0.9693 2.3228 16 8 4.1893 0.7610 1.4400 17 8 3.6696 1.8666 3.2814 18 6 1.9785 -0.5678 3.6258 19 6 2.3588 -1.8968 3.6500 20 6 2.2643 -2.6222 4.8227 21 6 1.7890 -2.0199 5.9728 22 6 1.4082 -0.6905 5.9503 23 17 0.8119 0.0666 7.3943 24 6 1.5081 0.0379 4.7767 25 17 1.0378 1.7087 4.7487 26 1 -0.3634 -1.0255 0.0670 27 1 -0.3633 0.5708 0.8545 28 1 -0.3634 0.4547 -0.9217 29 1 1.1315 1.4106 -3.4723 30 1 2.9172 -1.1206 1.0286 31 1 4.5215 2.3202 3.2240 32 1 2.7306 -2.3682 2.7523 33 1 2.5620 -3.6603 4.8407 34 1 1.7159 -2.5872 6.8889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061411.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:50 Heat of formation + Delta-G solvation = -95.344230 kcal Electronic energy + Delta-G solvation = -22228.025126 eV Core-core repulsion = 18597.748001 eV Total energy + Delta-G solvation = -3630.277125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76648 -40.28532 -38.03847 -37.50175 -37.41550 -36.87609 -34.91193 -32.84020 -31.60555 -30.14953 -27.77697 -26.97793 -23.95236 -23.72791 -22.38272 -21.33738 -19.24519 -19.03510 -18.25803 -17.74030 -17.28603 -16.82794 -16.60683 -16.23578 -15.51823 -15.28012 -15.03301 -15.02578 -14.65064 -14.17963 -13.92091 -13.41367 -12.94791 -12.89739 -12.83666 -12.75512 -12.59052 -12.50749 -12.46925 -12.37705 -12.31848 -12.09773 -11.87296 -11.79985 -11.72036 -10.99465 -10.57509 -9.84406 -9.69072 -9.50024 -8.17430 -6.25789 -0.01644 0.02061 0.83364 1.11551 1.23951 1.42926 1.43976 1.53108 2.03195 2.41345 2.53200 3.15413 3.18422 3.49057 3.87643 4.00315 4.10196 4.27893 4.35057 4.39950 4.62380 4.75154 4.97744 5.00802 5.09142 5.23169 5.25703 5.40160 5.51758 5.63936 5.65416 5.76348 6.07634 6.19628 6.54076 6.88486 6.93922 7.42132 8.92112 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.003980 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.315180 B = 7033.124045 C = 7314.379270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.217 3.783 3 H -0.026 1.026 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.268 1.268 12 N -0.641 5.641 13 C 0.136 3.864 14 H 0.114 0.886 15 C 0.459 3.541 16 O -0.536 6.536 17 O -0.499 6.499 18 C -0.067 4.067 19 C -0.082 4.082 20 C -0.094 4.094 21 C -0.089 4.089 22 C -0.043 4.043 23 Cl -0.050 7.050 24 C -0.027 4.027 25 Cl -0.049 7.049 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.345 0.655 31 H 0.420 0.580 32 H 0.143 0.857 33 H 0.175 0.825 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -4.681 20.250 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 H -0.009 1.009 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.193 1.193 12 N -0.273 5.273 13 C 0.023 3.977 14 H 0.131 0.869 15 C 0.300 3.700 16 O -0.426 6.426 17 O -0.311 6.311 18 C -0.069 4.069 19 C -0.100 4.100 20 C -0.111 4.111 21 C -0.107 4.107 22 C -0.071 4.071 23 Cl -0.021 7.021 24 C -0.056 4.056 25 Cl -0.020 7.020 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.165 0.835 31 H 0.281 0.719 32 H 0.161 0.839 33 H 0.193 0.807 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.399 -4.816 20.189 20.759 hybrid contribution 1.322 1.278 -1.449 2.341 sum 1.721 -3.538 18.740 19.148 Atomic orbital electron populations 1.21531 0.97072 0.99565 0.98727 1.18962 0.92574 0.91239 0.86324 1.00873 1.21425 1.35965 1.08296 0.91416 0.92023 1.25690 0.95121 0.95478 1.02073 1.70086 1.45912 1.15337 1.24512 0.85554 0.78856 0.78547 0.78588 1.19548 1.21353 1.19300 1.61114 1.32348 1.28996 1.04853 1.20259 0.92046 0.93280 0.92132 0.86885 1.24790 0.89681 0.77503 0.78076 1.90760 1.49980 1.64911 1.36934 1.84612 1.44700 1.51964 1.49785 1.19162 1.01327 0.95441 0.90964 1.21334 0.96821 0.91927 0.99952 1.21581 0.97306 1.01850 0.90410 1.21451 0.97007 0.91241 1.01026 1.20830 1.04492 0.94600 0.87167 1.98378 1.86452 1.81995 1.35256 1.20661 1.03826 0.87081 0.93985 1.98383 1.90110 1.14953 1.98510 0.93576 0.95429 0.94015 0.92888 0.83452 0.71944 0.83942 0.80734 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.28 9.26 71.98 0.67 -4.61 16 2 C 0.22 10.95 2.11 44.17 0.09 11.04 16 3 H -0.03 -1.53 7.58 -2.39 -0.02 -1.55 16 4 C -0.53 -29.25 8.48 25.60 0.22 -29.03 16 5 H 0.06 3.31 7.69 -2.91 -0.02 3.28 16 6 C 0.02 0.89 5.17 84.66 0.44 1.32 16 7 N -0.92 -53.87 12.16 21.45 0.26 -53.61 16 8 Si 0.96 43.81 29.55 68.60 2.03 45.83 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 N -0.64 -26.26 4.90 -481.04 -2.36 -28.62 16 13 C 0.14 4.84 2.04 43.42 0.09 4.92 16 14 H 0.11 4.28 6.14 -2.39 -0.01 4.26 16 15 C 0.46 16.49 7.31 71.24 0.52 17.01 16 16 O -0.54 -23.29 16.40 21.96 0.36 -22.93 16 17 O -0.50 -13.81 11.99 -51.36 -0.62 -14.42 16 18 C -0.07 -1.94 4.98 -19.85 -0.10 -2.04 16 19 C -0.08 -1.99 9.32 22.27 0.21 -1.78 16 20 C -0.09 -1.58 10.04 22.27 0.22 -1.36 16 21 C -0.09 -1.47 9.83 22.29 0.22 -1.25 16 22 C -0.04 -0.95 6.32 22.34 0.14 -0.81 16 23 Cl -0.05 -1.01 27.96 -2.72 -0.08 -1.08 16 24 C -0.03 -0.73 6.25 22.34 0.14 -0.59 16 25 Cl -0.05 -1.34 25.14 -2.72 -0.07 -1.41 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.03 1.17 7.47 -2.39 -0.02 1.15 16 28 H 0.04 2.19 6.83 -2.38 -0.02 2.17 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.34 14.43 6.70 -89.70 -0.60 13.83 16 31 H 0.42 7.93 9.10 -74.06 -0.67 7.26 16 32 H 0.14 3.56 6.89 -2.91 -0.02 3.54 16 33 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -67.17 321.52 2.28 -64.89 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.10 Total: 18.53 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 2.86 Total: -7.18 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.10 Total: -82.22 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.26 Total: -37.36 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -2.35 SS G_CDS: -0.14 Total: -2.50 kcal Total: -67.17 2.28 -64.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061411.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.457 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds