Wall clock time and date at job start Tue Mar 31 2020 11:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47116 * 2 1 4 4 C 1.50701 * 109.47301 * 240.00319 * 2 1 3 5 5 H 1.08002 * 119.99815 * 240.00007 * 4 2 1 6 6 C 1.37874 * 120.00138 * 59.99476 * 4 2 1 7 7 N 1.31511 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48489 * 109.47357 * 120.00193 * 8 6 4 11 11 H 1.48505 * 109.46678 * 240.00078 * 8 6 4 12 12 N 1.46898 * 109.47261 * 119.99722 * 2 1 3 13 13 C 1.46892 * 111.00435 * 275.00143 * 12 2 1 14 14 H 1.08997 * 109.46988 * 325.00162 * 13 12 2 15 15 C 1.50706 * 109.47226 * 84.99958 * 13 12 2 16 16 O 1.20825 * 119.99859 * 359.97438 * 15 13 12 17 17 O 1.34224 * 120.00295 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47409 * 204.99746 * 13 12 2 19 19 C 1.38252 * 120.00220 * 339.72970 * 18 13 12 20 20 C 1.38220 * 120.03986 * 179.71807 * 19 18 13 21 21 C 1.38254 * 120.03501 * 0.55480 * 20 19 18 22 22 C 1.38295 * 120.00213 * 359.71999 * 21 20 19 23 23 Cl 1.73599 * 120.01954 * 180.02562 * 22 21 20 24 24 C 1.38304 * 120.00000 * 159.99610 * 18 13 12 25 25 Cl 1.73603 * 120.02027 * 359.97438 * 24 18 13 26 26 H 1.09000 * 109.46942 * 300.00239 * 1 2 3 27 27 H 1.09000 * 109.47159 * 60.00274 * 1 2 3 28 28 H 1.08997 * 109.46664 * 179.97438 * 1 2 3 29 29 H 0.97009 * 119.99573 * 179.97438 * 7 6 4 30 30 H 1.00905 * 110.99972 * 38.95914 * 12 2 1 31 31 H 0.96700 * 117.00196 * 179.97438 * 17 15 13 32 32 H 1.08000 * 119.97554 * 359.97076 * 19 18 13 33 33 H 1.07998 * 119.98231 * 180.26962 * 20 19 18 34 34 H 1.08000 * 119.99411 * 179.70044 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1456 -2.2876 -3.6038 10 1 1.1663 -1.5866 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 1 2.3648 1.2176 2.0030 15 6 0.7324 0.2858 3.0135 16 8 -0.1878 -0.3643 2.5771 17 8 0.5519 1.0651 4.0913 18 6 3.1065 -0.2776 3.3328 19 6 3.5019 -1.6021 3.3069 20 6 4.4453 -2.0604 4.2071 21 6 4.9864 -1.1973 5.1419 22 6 4.5879 0.1266 5.1730 23 17 5.2674 1.2108 6.3462 24 6 3.6468 0.5871 4.2672 25 17 3.1462 2.2490 4.3044 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7095 1.1618 -3.4845 30 1 1.4496 -1.4979 1.4100 31 1 -0.3317 1.0732 4.4842 32 1 3.0762 -2.2782 2.5802 33 1 4.7567 -3.0942 4.1832 34 1 5.7200 -1.5572 5.8481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:53 Heat of formation + Delta-G solvation = -66.887392 kcal Electronic energy + Delta-G solvation = -22292.494705 eV Core-core repulsion = 18663.451561 eV Total energy + Delta-G solvation = -3629.043144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52078 -39.21582 -36.78258 -36.44374 -36.32478 -35.31183 -33.22687 -31.30122 -30.61083 -28.47954 -25.93655 -25.07782 -22.83799 -22.63642 -20.85397 -20.10168 -17.96123 -17.46952 -16.87185 -16.28622 -15.95020 -15.74121 -15.20613 -14.63577 -14.17624 -14.03030 -13.98657 -13.44688 -12.93729 -12.70967 -12.23719 -11.96014 -11.89404 -11.79282 -11.52749 -11.35565 -11.26828 -11.06294 -10.95743 -10.78893 -10.69019 -10.57800 -10.34871 -9.99346 -9.95153 -8.98722 -8.80998 -8.70865 -8.38262 -7.74333 -6.02004 -4.06264 0.96261 1.00027 1.82553 2.24220 2.46400 3.21895 3.30364 3.38137 3.42396 3.56856 4.35552 4.46023 4.78274 4.90526 5.02389 5.20835 5.29705 5.34597 5.41407 5.62112 5.67350 5.88351 6.21243 6.31971 6.56361 6.67221 6.73955 7.01475 7.08630 7.22094 7.73909 7.77650 8.05938 8.18942 8.30681 8.45321 8.98932 9.58617 11.04903 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.004186 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.379235 B = 6686.792819 C = 7214.851460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.208 3.792 3 H 0.035 0.965 4 C -0.497 4.497 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.647 5.647 13 C 0.135 3.865 14 H 0.126 0.874 15 C 0.448 3.552 16 O -0.494 6.494 17 O -0.510 6.510 18 C -0.051 4.051 19 C -0.069 4.069 20 C -0.110 4.110 21 C -0.102 4.102 22 C -0.037 4.037 23 Cl -0.058 7.058 24 C -0.016 4.016 25 Cl -0.036 7.036 26 H 0.020 0.980 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.342 0.658 31 H 0.398 0.602 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -1.352 17.630 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.278 5.278 13 C 0.022 3.978 14 H 0.144 0.856 15 C 0.287 3.713 16 O -0.381 6.381 17 O -0.320 6.320 18 C -0.053 4.053 19 C -0.087 4.087 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.065 4.065 23 Cl -0.029 7.029 24 C -0.044 4.044 25 Cl -0.007 7.007 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.255 0.745 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.371 -1.096 17.104 18.285 hybrid contribution -1.296 0.019 -0.367 1.347 sum 5.076 -1.077 16.737 17.523 Atomic orbital electron populations 1.22547 0.99287 0.99963 1.00779 1.19402 0.90735 0.94175 0.85594 0.94728 1.21068 1.30588 1.12658 0.89269 0.91704 1.24930 0.95193 0.95171 0.99071 1.69907 1.36993 1.23076 1.23357 0.86424 0.78483 0.79619 0.82756 1.19693 1.21196 1.21118 1.61302 1.57185 1.08014 1.01348 1.20385 0.86109 1.00962 0.90363 0.85631 1.24891 0.92597 0.75975 0.77792 1.90737 1.43523 1.42197 1.61631 1.84728 1.39613 1.64258 1.43401 1.19411 0.97848 0.93423 0.94645 1.21253 0.95587 0.94591 0.97266 1.21225 0.96731 1.00173 0.94691 1.21018 1.00510 0.90705 0.99844 1.20637 0.98958 0.92202 0.94703 1.98371 1.83836 1.64019 1.56693 1.20621 0.98248 0.87813 0.97745 1.98392 1.89922 1.14762 1.97619 0.96078 0.89901 0.95108 0.93037 0.83768 0.74497 0.83271 0.84386 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 7.78 37.16 0.29 -3.81 16 2 C 0.21 5.06 2.57 -68.86 -0.18 4.88 16 3 H 0.03 0.92 7.43 -51.93 -0.39 0.53 16 4 C -0.50 -13.32 8.84 -34.44 -0.30 -13.62 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.65 -12.87 4.85 -103.40 -0.50 -13.37 16 13 C 0.14 2.33 2.20 -70.02 -0.15 2.17 16 14 H 0.13 2.29 6.64 -51.93 -0.34 1.95 16 15 C 0.45 7.44 6.90 36.01 0.25 7.69 16 16 O -0.49 -9.48 13.17 -18.75 -0.25 -9.73 16 17 O -0.51 -6.77 11.18 -39.24 -0.44 -7.21 16 18 C -0.05 -0.76 5.05 -104.59 -0.53 -1.29 16 19 C -0.07 -0.90 9.33 -39.58 -0.37 -1.27 16 20 C -0.11 -1.16 10.04 -39.58 -0.40 -1.55 16 21 C -0.10 -1.06 9.83 -39.55 -0.39 -1.45 16 22 C -0.04 -0.46 6.32 -39.47 -0.25 -0.71 16 23 Cl -0.06 -0.66 27.96 -51.86 -1.45 -2.11 16 24 C -0.02 -0.23 6.14 -39.46 -0.24 -0.47 16 25 Cl -0.04 -0.51 24.59 -51.86 -1.28 -1.78 16 26 H 0.02 0.48 5.07 -51.93 -0.26 0.22 16 27 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 28 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.34 6.70 7.04 -39.29 -0.28 6.42 16 31 H 0.40 3.63 9.10 45.56 0.41 4.05 16 32 H 0.15 1.97 6.84 -52.49 -0.36 1.61 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 312.80 15.07 4.71 4.71 Total: -1.00 -29.84 312.80 -8.30 -38.15 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -2.34 Total: 7.85 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.37 Total: -7.97 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.13 Total: -38.04 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.69 Total: -16.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -2.73 Total: -3.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.84 -8.30 -38.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.741 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds