Wall clock time and date at job start Tue Mar 31 2020 11:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47116 * 2 1 4 4 C 1.50701 * 109.47301 * 240.00319 * 2 1 3 5 5 H 1.08002 * 119.99815 * 240.00007 * 4 2 1 6 6 C 1.37874 * 120.00138 * 59.99476 * 4 2 1 7 7 N 1.31511 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48489 * 109.47357 * 120.00193 * 8 6 4 11 11 H 1.48505 * 109.46678 * 240.00078 * 8 6 4 12 12 N 1.46898 * 109.47261 * 119.99722 * 2 1 3 13 13 C 1.46892 * 111.00435 * 275.00143 * 12 2 1 14 14 H 1.08997 * 109.46988 * 325.00162 * 13 12 2 15 15 C 1.50706 * 109.47226 * 84.99958 * 13 12 2 16 16 O 1.20825 * 119.99859 * 359.97438 * 15 13 12 17 17 O 1.34224 * 120.00295 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47409 * 204.99746 * 13 12 2 19 19 C 1.38252 * 120.00220 * 339.72970 * 18 13 12 20 20 C 1.38220 * 120.03986 * 179.71807 * 19 18 13 21 21 C 1.38254 * 120.03501 * 0.55480 * 20 19 18 22 22 C 1.38295 * 120.00213 * 359.71999 * 21 20 19 23 23 Cl 1.73599 * 120.01954 * 180.02562 * 22 21 20 24 24 C 1.38304 * 120.00000 * 159.99610 * 18 13 12 25 25 Cl 1.73603 * 120.02027 * 359.97438 * 24 18 13 26 26 H 1.09000 * 109.46942 * 300.00239 * 1 2 3 27 27 H 1.09000 * 109.47159 * 60.00274 * 1 2 3 28 28 H 1.08997 * 109.46664 * 179.97438 * 1 2 3 29 29 H 0.97009 * 119.99573 * 179.97438 * 7 6 4 30 30 H 1.00905 * 110.99972 * 38.95914 * 12 2 1 31 31 H 0.96700 * 117.00196 * 179.97438 * 17 15 13 32 32 H 1.08000 * 119.97554 * 359.97076 * 19 18 13 33 33 H 1.07998 * 119.98231 * 180.26962 * 20 19 18 34 34 H 1.08000 * 119.99411 * 179.70044 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1456 -2.2876 -3.6038 10 1 1.1663 -1.5866 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2226 2.3469 14 1 2.3648 1.2176 2.0030 15 6 0.7324 0.2858 3.0135 16 8 -0.1878 -0.3643 2.5771 17 8 0.5519 1.0651 4.0913 18 6 3.1065 -0.2776 3.3328 19 6 3.5019 -1.6021 3.3069 20 6 4.4453 -2.0604 4.2071 21 6 4.9864 -1.1973 5.1419 22 6 4.5879 0.1266 5.1730 23 17 5.2674 1.2108 6.3462 24 6 3.6468 0.5871 4.2672 25 17 3.1462 2.2490 4.3044 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7095 1.1618 -3.4845 30 1 1.4496 -1.4979 1.4100 31 1 -0.3317 1.0732 4.4842 32 1 3.0762 -2.2782 2.5802 33 1 4.7567 -3.0942 4.1832 34 1 5.7200 -1.5572 5.8481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:53 Heat of formation + Delta-G solvation = -85.472317 kcal Electronic energy + Delta-G solvation = -22293.300608 eV Core-core repulsion = 18663.451561 eV Total energy + Delta-G solvation = -3629.849046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81701 -40.27018 -38.08504 -37.50113 -37.40792 -36.76026 -34.93589 -32.85610 -31.58578 -29.99251 -27.47683 -27.09491 -23.90651 -23.70165 -22.44844 -21.61480 -19.20246 -18.88074 -18.26168 -17.72265 -17.37518 -16.85013 -16.55647 -16.26146 -15.46593 -15.15389 -15.02003 -14.90495 -14.47715 -14.21967 -13.81326 -13.60046 -13.02220 -12.89303 -12.87580 -12.80561 -12.60358 -12.58012 -12.36173 -12.29553 -12.09739 -11.99832 -11.86661 -11.74967 -11.65402 -10.92851 -10.46921 -9.82406 -9.67321 -9.42728 -8.09460 -6.20760 -0.00410 0.03406 0.84825 1.13572 1.25414 1.44565 1.46300 1.58325 2.06256 2.43822 2.55065 3.18670 3.21118 3.51241 3.90633 4.02160 4.11342 4.29705 4.37208 4.42379 4.63629 4.72876 4.98268 4.99639 5.07144 5.24377 5.28922 5.41030 5.53718 5.66669 5.69867 5.78369 6.17897 6.43546 6.53232 6.90518 6.97603 7.48240 8.96826 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.004186 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.379235 B = 6686.792819 C = 7214.851460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.512 4.512 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.642 5.642 13 C 0.137 3.863 14 H 0.110 0.890 15 C 0.457 3.543 16 O -0.524 6.524 17 O -0.498 6.498 18 C -0.070 4.070 19 C -0.081 4.081 20 C -0.096 4.096 21 C -0.090 4.090 22 C -0.045 4.045 23 Cl -0.051 7.051 24 C -0.028 4.028 25 Cl -0.046 7.046 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.024 0.976 29 H 0.260 0.740 30 H 0.344 0.656 31 H 0.419 0.581 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 -2.754 19.009 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.550 4.550 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.273 5.273 13 C 0.023 3.977 14 H 0.128 0.872 15 C 0.298 3.702 16 O -0.414 6.414 17 O -0.310 6.310 18 C -0.071 4.071 19 C -0.099 4.099 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.072 4.072 23 Cl -0.021 7.021 24 C -0.056 4.056 25 Cl -0.016 7.016 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.165 0.835 31 H 0.280 0.720 32 H 0.162 0.838 33 H 0.192 0.808 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.826 -2.489 18.529 20.268 hybrid contribution -1.717 0.485 -0.640 1.895 sum 6.109 -2.004 17.890 19.010 Atomic orbital electron populations 1.22352 0.99564 0.99108 0.99804 1.19105 0.90278 0.92815 0.87076 0.97519 1.21388 1.30523 1.12685 0.90444 0.91835 1.25729 0.95374 0.95845 1.02023 1.70040 1.37996 1.24359 1.23940 0.85422 0.77940 0.78678 0.79053 1.18775 1.20998 1.20864 1.61113 1.56758 1.08194 1.01201 1.20237 0.87447 0.99727 0.90257 0.87197 1.24630 0.91871 0.75610 0.78066 1.90721 1.44225 1.43640 1.62826 1.84663 1.41341 1.62856 1.42103 1.19212 0.98368 0.94532 0.95027 1.21359 0.96601 0.93813 0.98151 1.21585 0.94916 1.01793 0.93077 1.21442 1.00067 0.89608 0.99721 1.20829 0.98653 0.93194 0.94550 1.98375 1.83563 1.64018 1.56190 1.20674 0.99179 0.87344 0.98441 1.98383 1.90126 1.15445 1.97679 0.95052 0.92753 0.95723 0.93062 0.83544 0.72031 0.83776 0.80844 0.81083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.54 7.78 71.98 0.56 -6.98 16 2 C 0.22 10.79 2.57 44.17 0.11 10.90 16 3 H 0.01 0.38 7.43 -2.39 -0.02 0.36 16 4 C -0.51 -27.82 8.84 25.60 0.23 -27.59 16 5 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 8 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 N -0.64 -25.97 4.85 -481.06 -2.33 -28.30 16 13 C 0.14 4.76 2.20 43.42 0.10 4.85 16 14 H 0.11 4.16 6.64 -2.39 -0.02 4.15 16 15 C 0.46 15.18 6.90 71.24 0.49 15.67 16 16 O -0.52 -20.19 13.17 21.97 0.29 -19.90 16 17 O -0.50 -12.81 11.18 -51.35 -0.57 -13.38 16 18 C -0.07 -2.02 5.05 -19.85 -0.10 -2.12 16 19 C -0.08 -2.00 9.33 22.27 0.21 -1.79 16 20 C -0.10 -1.68 10.04 22.27 0.22 -1.46 16 21 C -0.09 -1.55 9.83 22.29 0.22 -1.33 16 22 C -0.04 -1.00 6.32 22.34 0.14 -0.86 16 23 Cl -0.05 -1.04 27.96 -2.72 -0.08 -1.12 16 24 C -0.03 -0.76 6.14 22.35 0.14 -0.62 16 25 Cl -0.05 -1.25 24.59 -2.72 -0.07 -1.32 16 26 H 0.03 1.48 5.07 -2.39 -0.01 1.47 16 27 H 0.05 3.05 6.07 -2.39 -0.01 3.03 16 28 H 0.02 1.22 8.13 -2.39 -0.02 1.20 16 29 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 30 H 0.34 13.66 7.04 -89.69 -0.63 13.03 16 31 H 0.42 7.05 9.10 -74.06 -0.67 6.38 16 32 H 0.14 3.67 6.84 -2.91 -0.02 3.65 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -64.92 312.80 2.15 -62.77 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.12 Total: 19.23 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 2.76 Total: -10.41 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.09 Total: -81.43 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.28 Total: -33.28 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.14 Total: -2.43 kcal Total: -64.92 2.15 -62.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.703 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds