Wall clock time and date at job start Tue Mar 31 2020 11:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46510 * 109.46785 * 2 1 4 4 C 1.36936 * 119.99693 * 85.24148 * 3 2 1 5 5 H 1.07999 * 119.99715 * 168.44196 * 4 3 2 6 6 C 1.38807 * 120.00207 * 348.42663 * 4 3 2 7 7 N 1.31619 * 119.99987 * 1.65897 * 6 4 3 8 8 Si 1.86801 * 120.00140 * 181.65249 * 6 4 3 9 9 H 1.48500 * 109.47274 * 60.00273 * 8 6 4 10 10 H 1.48499 * 109.47345 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47020 * 300.00435 * 8 6 4 12 12 C 1.46498 * 119.99815 * 265.23748 * 3 2 1 13 13 H 1.09000 * 109.47091 * 353.33372 * 12 3 2 14 14 C 1.50696 * 109.46956 * 233.33251 * 12 3 2 15 15 O 1.20826 * 120.00333 * 359.97438 * 14 12 3 16 16 O 1.34226 * 120.00067 * 180.28038 * 14 12 3 17 17 C 1.50699 * 109.46902 * 113.33063 * 12 3 2 18 18 C 1.38253 * 120.00099 * 21.34071 * 17 12 3 19 19 C 1.38218 * 120.03402 * 179.72136 * 18 17 12 20 20 C 1.38250 * 120.04396 * 0.54642 * 19 18 17 21 21 C 1.38299 * 119.99553 * 359.72463 * 20 19 18 22 22 Cl 1.73597 * 120.01871 * 180.02562 * 21 20 19 23 23 C 1.38305 * 120.00195 * 201.60771 * 17 12 3 24 24 Cl 1.73605 * 120.01589 * 359.97438 * 23 17 12 25 25 H 1.09000 * 109.46840 * 187.92253 * 1 2 3 26 26 H 1.08992 * 109.47041 * 307.92260 * 1 2 3 27 27 H 1.08994 * 109.47131 * 67.92706 * 1 2 3 28 28 H 1.09000 * 109.47148 * 240.00227 * 2 1 3 29 29 H 1.08996 * 109.47162 * 120.00007 * 2 1 3 30 30 H 0.97001 * 119.99829 * 179.97438 * 7 6 4 31 31 H 0.96704 * 117.00570 * 179.72282 * 16 14 12 32 32 H 1.07999 * 119.97708 * 359.96849 * 18 17 12 33 33 H 1.08007 * 119.97844 * 180.27044 * 19 18 17 34 34 H 1.07996 * 120.00001 * 179.70394 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1538 2.0596 1.1819 5 1 2.6836 3.0004 1.2069 6 6 1.6098 1.5382 2.3476 7 7 0.9923 0.3761 2.3233 8 14 1.7545 2.4856 3.9510 9 1 1.0930 3.8073 3.8065 10 1 1.0973 1.7191 5.0400 11 1 3.1887 2.6834 4.2814 12 6 2.3618 2.0368 -1.2644 13 1 2.3044 1.3122 -2.0766 14 6 3.7620 2.5876 -1.1805 15 8 4.4067 2.4474 -0.1683 16 8 4.2907 3.2392 -2.2281 17 6 1.3941 3.1621 -1.5258 18 6 0.6817 3.7183 -0.4796 19 6 -0.2017 4.7543 -0.7178 20 6 -0.3825 5.2280 -2.0040 21 6 0.3252 4.6689 -3.0525 22 17 0.0992 5.2636 -4.6676 23 6 1.2145 3.6347 -2.8131 24 17 2.1041 2.9324 -4.1281 25 1 -0.3633 -1.0179 0.1416 26 1 -0.3633 0.6316 0.8106 27 1 -0.3633 0.3862 -0.9523 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.6125 0.0116 3.1380 31 1 5.1906 3.5781 -2.1257 32 1 0.8186 3.3458 0.5248 33 1 -0.7545 5.1911 0.1008 34 1 -1.0765 6.0342 -2.1899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:59 Heat of formation + Delta-G solvation = -43.115834 kcal Electronic energy + Delta-G solvation = -23162.478461 eV Core-core repulsion = 19534.466129 eV Total energy + Delta-G solvation = -3628.012331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48855 -40.11266 -38.13628 -37.41109 -37.26870 -36.67584 -34.11901 -32.31207 -31.54288 -30.50282 -28.50544 -25.59122 -23.83555 -23.53812 -22.65855 -21.47180 -19.08006 -18.93496 -18.14871 -17.28842 -16.98127 -16.80953 -16.38975 -15.99190 -15.33647 -15.01355 -14.98022 -14.89767 -14.41761 -13.98353 -13.64611 -13.28647 -12.99394 -12.88164 -12.76697 -12.58734 -12.53871 -12.39836 -12.27758 -12.22543 -11.96325 -11.86249 -11.73458 -11.57865 -11.44846 -11.23353 -10.28410 -9.68018 -9.56381 -8.93727 -7.67181 -5.17714 0.09846 0.17261 0.91608 1.29981 1.43077 1.49052 1.53636 1.57844 2.19419 2.50025 2.68696 3.30880 3.49429 3.65652 4.07524 4.16774 4.29397 4.44474 4.55833 4.65508 4.72006 4.76782 5.03766 5.17094 5.28001 5.33980 5.47843 5.58499 5.64738 5.79001 5.88061 5.90841 6.23561 6.40740 7.21144 7.22658 7.79599 8.18265 9.22450 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.005810 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.632090 B = 4818.526665 C = 5288.437684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.168 3.832 3 N -0.582 5.582 4 C -0.223 4.223 5 H 0.067 0.933 6 C -0.044 4.044 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.292 1.292 11 H -0.296 1.296 12 C 0.224 3.776 13 H 0.113 0.887 14 C 0.463 3.537 15 O -0.527 6.527 16 O -0.505 6.505 17 C -0.085 4.085 18 C -0.098 4.098 19 C -0.113 4.113 20 C -0.093 4.093 21 C -0.048 4.048 22 Cl -0.051 7.051 23 C -0.025 4.025 24 Cl -0.043 7.043 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.010 0.990 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.246 0.754 31 H 0.413 0.587 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 8.192 -11.607 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.044 3.956 3 N -0.302 5.302 4 C -0.352 4.352 5 H 0.084 0.916 6 C -0.238 4.238 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.218 1.218 11 H -0.223 1.223 12 C 0.112 3.888 13 H 0.130 0.870 14 C 0.303 3.697 15 O -0.415 6.415 16 O -0.317 6.317 17 C -0.089 4.089 18 C -0.116 4.116 19 C -0.131 4.131 20 C -0.112 4.112 21 C -0.076 4.076 22 Cl -0.022 7.022 23 C -0.053 4.053 24 Cl -0.013 7.013 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.273 0.727 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.473 7.863 -11.467 14.122 hybrid contribution 0.978 0.300 0.901 1.363 sum -1.496 8.162 -10.566 13.435 Atomic orbital electron populations 1.22061 0.97600 0.99470 0.98195 1.21024 0.93628 0.82793 0.98138 1.44208 1.74206 1.11704 1.00105 1.19097 1.26842 1.03432 0.85848 0.91559 1.25343 1.00029 0.98433 0.99987 1.70367 1.41365 1.18219 1.26230 0.85530 0.76873 0.78626 0.80548 1.19630 1.21838 1.22319 1.18675 0.85905 0.92862 0.91392 0.86995 1.24911 0.90262 0.74336 0.80186 1.90705 1.62598 1.55571 1.32643 1.84664 1.36963 1.67592 1.42500 1.20138 0.99683 0.97864 0.91210 1.22380 0.93366 0.93900 1.01964 1.21545 0.98021 0.96263 0.97295 1.21321 0.98984 1.00399 0.90498 1.20761 1.00819 0.98007 0.87993 1.98353 1.96207 1.87100 1.20561 1.20668 0.97656 0.97453 0.89514 1.98351 1.74011 1.82923 1.46053 0.94973 0.91915 0.97116 0.96456 0.90464 0.94305 0.72664 0.82599 0.82670 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.29 71.98 0.67 -4.31 16 2 C 0.17 7.71 5.70 86.38 0.49 8.21 16 3 N -0.58 -26.86 2.12 -686.39 -1.45 -28.32 16 4 C -0.22 -11.23 4.95 84.03 0.42 -10.81 16 5 H 0.07 3.48 6.51 -2.91 -0.02 3.46 16 6 C -0.04 -2.23 5.24 84.86 0.44 -1.78 16 7 N -0.91 -47.74 7.33 21.65 0.16 -47.58 16 8 Si 0.95 42.92 29.55 68.60 2.03 44.95 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 12 C 0.22 8.80 2.43 43.50 0.11 8.91 16 13 H 0.11 4.16 6.84 -2.39 -0.02 4.14 16 14 C 0.46 17.97 7.38 71.23 0.53 18.50 16 15 O -0.53 -24.58 15.18 21.96 0.33 -24.25 16 16 O -0.51 -14.89 11.42 -51.38 -0.59 -15.48 16 17 C -0.09 -3.07 5.03 -19.85 -0.10 -3.17 16 18 C -0.10 -3.58 8.97 22.27 0.20 -3.38 16 19 C -0.11 -3.20 10.04 22.27 0.22 -2.97 16 20 C -0.09 -2.31 9.83 22.29 0.22 -2.09 16 21 C -0.05 -1.33 6.32 22.34 0.14 -1.19 16 22 Cl -0.05 -1.22 27.96 -2.72 -0.08 -1.30 16 23 C -0.02 -0.77 6.16 22.34 0.14 -0.64 16 24 Cl -0.04 -1.22 24.77 -2.72 -0.07 -1.29 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.07 6.16 -2.39 -0.01 3.06 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.02 0.72 7.78 -2.39 -0.02 0.70 16 29 H 0.08 4.05 5.94 -2.39 -0.01 4.03 16 30 H 0.25 12.79 8.31 -92.71 -0.77 12.02 16 31 H 0.41 8.53 9.10 -74.05 -0.67 7.85 16 32 H 0.16 6.73 4.48 -2.91 -0.01 6.72 16 33 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -58.57 308.51 4.31 -54.26 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.49 Total: 13.74 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 3.47 Total: 5.27 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.29 Total: -75.90 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.25 Total: -39.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.14 Total: -2.59 kcal Total: -58.57 4.31 -54.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.146 kcal (2) G-P(sol) polarization free energy of solvation -58.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds