Wall clock time and date at job start Tue Mar 31 2020 11:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31600 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48496 * 109.47195 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.46757 * 29.99527 * 3 2 1 6 6 H 1.48496 * 109.47432 * 149.99277 * 3 2 1 7 7 C 1.38742 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99622 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.76195 * 99.99978 * 180.02562 * 9 7 2 11 11 N 1.32479 * 119.79749 * 0.28597 * 10 9 7 12 12 C 1.31829 * 121.73784 * 180.26882 * 11 10 9 13 13 C 1.50706 * 119.43073 * 179.71737 * 12 11 10 14 14 F 1.39900 * 109.46715 * 269.72682 * 13 12 11 15 15 F 1.39897 * 109.47068 * 29.72593 * 13 12 11 16 16 F 1.39895 * 109.47042 * 149.72902 * 13 12 11 17 17 C 1.38323 * 121.13723 * 359.43832 * 12 11 10 18 18 C 1.38564 * 119.46581 * 0.27638 * 17 12 11 19 19 C 1.39511 * 118.39932 * 359.97438 * 18 17 12 20 20 C 1.48309 * 120.57621 * 180.02562 * 19 18 17 21 21 N 1.34095 * 126.68496 * 179.68467 * 20 19 18 22 22 N 1.28992 * 107.26687 * 179.89552 * 21 20 19 23 23 N 1.28724 * 108.95685 * 0.37773 * 22 21 20 24 24 H 0.96999 * 125.33857 * 179.80359 * 23 22 21 25 25 N 1.28874 * 109.33547 * 359.75996 * 23 22 21 26 26 H 0.97003 * 119.99696 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.26474 * 180.25158 * 17 12 11 28 28 H 1.07992 * 120.80398 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4402 0.7002 7 6 2.0097 -1.2016 0.0005 8 1 3.0897 -1.2015 0.0010 9 16 1.1287 -2.7275 0.0005 10 6 2.4784 -3.8600 0.0021 11 7 3.7217 -3.4025 0.0086 12 6 4.7597 -4.2152 0.0047 13 6 6.1519 -3.6382 0.0060 14 9 6.5842 -3.4604 -1.3126 15 9 6.1446 -2.4041 0.6648 16 9 7.0193 -4.5146 0.6669 17 6 4.5930 -5.5884 0.0052 18 6 3.3133 -6.1196 0.0041 19 6 2.2299 -5.2406 0.0030 20 6 0.8396 -5.7568 0.0023 21 7 -0.2857 -5.0275 0.0072 22 7 -1.2769 -5.8530 0.0023 23 7 -0.8192 -7.0561 0.0027 24 1 -1.3593 -7.8618 0.0023 25 7 0.4691 -7.0225 0.0027 26 1 -0.4850 0.8401 -0.0004 27 1 5.4535 -6.2411 0.0061 28 1 3.1581 -7.1884 0.0041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606350992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:42 Heat of formation + Delta-G solvation = 9.405860 kcal Electronic energy + Delta-G solvation = -23447.136395 eV Core-core repulsion = 19212.773798 eV Total energy + Delta-G solvation = -4234.362597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.025 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.83392 -47.40071 -47.24175 -44.09988 -39.53431 -34.33668 -33.59832 -32.79112 -31.82179 -31.06503 -26.74261 -25.79342 -24.56918 -23.66252 -22.91358 -21.46711 -19.14974 -18.73335 -18.21530 -18.03923 -17.45160 -16.81917 -16.36899 -15.85067 -15.02534 -14.98246 -14.32211 -14.10196 -13.82911 -13.76088 -13.65218 -13.47716 -13.44818 -13.42618 -12.94464 -12.66821 -12.08637 -11.69002 -11.26443 -11.20388 -11.15483 -11.05204 -10.88659 -10.75320 -10.20494 -9.89601 -9.27211 -9.05755 -8.87206 -8.70570 -6.91519 -6.57323 -4.24751 0.69937 1.46255 1.56397 2.48306 2.61723 2.77416 2.94251 3.15245 3.19928 3.29133 3.84481 3.86612 3.90226 4.12117 4.35715 4.49340 4.74422 4.89249 4.90257 5.30241 5.43629 5.50961 5.64043 5.72654 5.88087 6.20340 6.42001 6.62262 6.75133 7.47138 8.13066 8.32267 8.49740 8.94456 10.47170 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.007673 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.564612 B = 3648.103132 C = 6712.173689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.927 3.073 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.564 4.564 8 H 0.111 0.889 9 S 0.246 5.754 10 C 0.105 3.895 11 N -0.442 5.442 12 C 0.084 3.916 13 C 0.521 3.479 14 F -0.175 7.175 15 F -0.164 7.164 16 F -0.177 7.177 17 C -0.204 4.204 18 C -0.002 4.002 19 C -0.090 4.090 20 C 0.233 3.767 21 N -0.241 5.241 22 N -0.055 5.055 23 N -0.236 5.236 24 H 0.470 0.530 25 N -0.308 5.308 26 H 0.278 0.722 27 H 0.139 0.861 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -13.295 0.022 13.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.132 4.132 3 Si 0.752 3.248 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.712 4.712 8 H 0.129 0.871 9 S 0.509 5.491 10 C -0.145 4.145 11 N -0.154 5.154 12 C -0.068 4.068 13 C 0.466 3.534 14 F -0.156 7.156 15 F -0.145 7.145 16 F -0.158 7.158 17 C -0.235 4.235 18 C -0.031 4.031 19 C -0.110 4.110 20 C -0.046 4.046 21 N -0.114 5.114 22 N -0.051 5.051 23 N -0.081 5.081 24 H 0.323 0.677 25 N -0.161 5.161 26 H 0.087 0.913 27 H 0.156 0.844 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.737 -11.993 0.037 12.118 hybrid contribution 2.077 -0.213 -0.021 2.088 sum 3.815 -12.206 0.016 12.788 Atomic orbital electron populations 1.69965 1.06272 1.28916 1.44177 1.25196 0.95060 1.00090 0.92871 0.86004 0.79903 0.80031 0.78911 1.19756 1.20544 1.18739 1.23989 0.98576 0.91799 1.56818 0.87064 1.84466 0.98310 0.94326 1.71996 1.24422 0.97090 0.95413 0.97529 1.67819 0.97420 1.36734 1.13472 1.20987 0.92434 0.91723 1.01628 1.18028 0.85456 0.76052 0.73899 1.93206 1.90966 1.95321 1.36128 1.93242 1.96754 1.43724 1.80784 1.93163 1.72094 1.69419 1.81165 1.21136 0.98187 0.93898 1.10310 1.21184 0.90474 0.99494 0.91913 1.17538 0.86720 0.92781 1.13943 1.23304 0.95188 0.84887 1.01233 1.76339 0.95030 1.23352 1.16712 1.78993 1.23217 0.87983 1.14892 1.47682 1.03543 1.09995 1.46832 0.67675 1.74842 0.95040 1.22338 1.23924 0.91256 0.84359 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.70 13.22 55.49 0.73 -22.97 15 2 C 0.08 2.10 5.49 -17.46 -0.10 2.01 15 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.26 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.56 -15.33 9.25 30.92 0.29 -15.05 15 8 H 0.11 3.07 6.54 -52.49 -0.34 2.72 15 9 S 0.25 6.13 18.71 -107.50 -2.01 4.11 15 10 C 0.10 2.31 6.99 -16.51 -0.12 2.19 15 11 N -0.44 -9.73 8.03 -8.02 -0.06 -9.79 15 12 C 0.08 1.54 6.30 -82.56 -0.52 1.02 15 13 C 0.52 8.79 3.43 36.01 0.12 8.91 15 14 F -0.17 -2.91 17.30 2.25 0.04 -2.87 15 15 F -0.16 -3.08 17.03 2.25 0.04 -3.04 15 16 F -0.18 -2.58 16.42 2.25 0.04 -2.54 15 17 C -0.20 -3.09 9.41 -39.43 -0.37 -3.46 15 18 C 0.00 -0.03 9.83 -38.99 -0.38 -0.41 15 19 C -0.09 -1.68 5.91 -104.51 -0.62 -2.30 15 20 C 0.23 4.14 7.85 -156.27 -1.23 2.92 15 21 N -0.24 -4.65 9.73 32.14 0.31 -4.34 15 22 N -0.06 -0.87 13.47 60.35 0.81 -0.06 15 23 N -0.24 -2.76 7.90 60.35 0.48 -2.29 15 24 H 0.47 2.84 8.96 -340.36 -3.05 -0.21 15 25 N -0.31 -4.40 12.16 32.15 0.39 -4.01 15 26 H 0.28 7.09 8.31 -40.82 -0.34 6.76 15 27 H 0.14 1.63 7.58 -52.48 -0.40 1.23 15 28 H 0.14 1.69 7.96 -52.49 -0.42 1.28 15 LS Contribution 288.65 15.07 4.35 4.35 Total: -1.00 -30.68 288.65 -6.17 -36.86 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -3.34 Total: -5.08 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.92 Total: -4.16 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 2.66 Total: -43.45 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 0.11 Total: -8.45 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -2.01 Total: 4.11 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.68 -6.17 -36.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.263 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds