Wall clock time and date at job start Tue Mar 31 2020 11:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31600 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48496 * 109.47195 * 270.00034 * 3 2 1 5 5 H 1.48503 * 109.46757 * 29.99527 * 3 2 1 6 6 H 1.48496 * 109.47432 * 149.99277 * 3 2 1 7 7 C 1.38742 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99622 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.76195 * 99.99978 * 180.02562 * 9 7 2 11 11 N 1.32479 * 119.79749 * 0.28597 * 10 9 7 12 12 C 1.31829 * 121.73784 * 180.26882 * 11 10 9 13 13 C 1.50706 * 119.43073 * 179.71737 * 12 11 10 14 14 F 1.39900 * 109.46715 * 269.72682 * 13 12 11 15 15 F 1.39897 * 109.47068 * 29.72593 * 13 12 11 16 16 F 1.39895 * 109.47042 * 149.72902 * 13 12 11 17 17 C 1.38323 * 121.13723 * 359.43832 * 12 11 10 18 18 C 1.38564 * 119.46581 * 0.27638 * 17 12 11 19 19 C 1.39511 * 118.39932 * 359.97438 * 18 17 12 20 20 C 1.48309 * 120.57621 * 180.02562 * 19 18 17 21 21 N 1.34095 * 126.68496 * 179.68467 * 20 19 18 22 22 N 1.28992 * 107.26687 * 179.89552 * 21 20 19 23 23 N 1.28724 * 108.95685 * 0.37773 * 22 21 20 24 24 H 0.96999 * 125.33857 * 179.80359 * 23 22 21 25 25 N 1.28874 * 109.33547 * 359.75996 * 23 22 21 26 26 H 0.97003 * 119.99696 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.26474 * 180.25158 * 17 12 11 28 28 H 1.07992 * 120.80398 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4402 0.7002 7 6 2.0097 -1.2016 0.0005 8 1 3.0897 -1.2015 0.0010 9 16 1.1287 -2.7275 0.0005 10 6 2.4784 -3.8600 0.0021 11 7 3.7217 -3.4025 0.0086 12 6 4.7597 -4.2152 0.0047 13 6 6.1519 -3.6382 0.0060 14 9 6.5842 -3.4604 -1.3126 15 9 6.1446 -2.4041 0.6648 16 9 7.0193 -4.5146 0.6669 17 6 4.5930 -5.5884 0.0052 18 6 3.3133 -6.1196 0.0041 19 6 2.2299 -5.2406 0.0030 20 6 0.8396 -5.7568 0.0023 21 7 -0.2857 -5.0275 0.0072 22 7 -1.2769 -5.8530 0.0023 23 7 -0.8192 -7.0561 0.0027 24 1 -1.3593 -7.8618 0.0023 25 7 0.4691 -7.0225 0.0027 26 1 -0.4850 0.8401 -0.0004 27 1 5.4535 -6.2411 0.0061 28 1 3.1581 -7.1884 0.0041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606350992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:41 Heat of formation + Delta-G solvation = -12.017960 kcal Electronic energy + Delta-G solvation = -23448.065401 eV Core-core repulsion = 19212.773798 eV Total energy + Delta-G solvation = -4235.291603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.025 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.18544 -48.69987 -48.65585 -45.36344 -41.06612 -35.68288 -34.93349 -34.69337 -33.28164 -32.45458 -28.18091 -27.67908 -25.91417 -25.06847 -24.28390 -22.86299 -20.55250 -20.12873 -19.56376 -19.40983 -19.13732 -18.05996 -17.82256 -17.28373 -16.92615 -16.55438 -15.69103 -15.46109 -15.22789 -15.15815 -15.08905 -14.97272 -14.82180 -14.80694 -14.46737 -14.04146 -13.57424 -13.12183 -13.03371 -12.99460 -12.69555 -12.48237 -12.17471 -12.14032 -11.94694 -11.51147 -10.91796 -10.57090 -10.52993 -10.37821 -8.70424 -8.47881 -6.23210 -0.69583 0.14539 0.22722 1.19165 1.21801 1.35735 1.38001 1.42330 1.51652 1.56389 2.12613 2.44445 2.47151 2.67194 2.93114 2.93854 3.12732 3.26045 3.37665 3.90846 4.02829 4.19168 4.21046 4.32370 4.54844 4.83712 5.01560 5.38988 5.52032 5.72918 6.29521 6.61739 7.00106 7.22751 8.58945 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.007673 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.564612 B = 3648.103132 C = 6712.173689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.581 4.581 8 H 0.094 0.906 9 S 0.159 5.841 10 C 0.105 3.895 11 N -0.479 5.479 12 C 0.056 3.944 13 C 0.527 3.473 14 F -0.173 7.173 15 F -0.180 7.180 16 F -0.158 7.158 17 C -0.160 4.160 18 C 0.007 3.993 19 C -0.077 4.077 20 C 0.210 3.790 21 N -0.282 5.282 22 N -0.063 5.063 23 N -0.195 5.195 24 H 0.495 0.505 25 N -0.277 5.277 26 H 0.278 0.722 27 H 0.189 0.811 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 -17.041 0.008 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.729 4.729 8 H 0.112 0.888 9 S 0.416 5.584 10 C -0.145 4.145 11 N -0.192 5.192 12 C -0.092 4.092 13 C 0.472 3.528 14 F -0.155 7.155 15 F -0.161 7.161 16 F -0.139 7.139 17 C -0.188 4.188 18 C -0.022 4.022 19 C -0.095 4.095 20 C -0.070 4.070 21 N -0.154 5.154 22 N -0.058 5.058 23 N -0.046 5.046 24 H 0.355 0.645 25 N -0.132 5.132 26 H 0.088 0.912 27 H 0.206 0.794 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.491 -15.834 0.022 16.214 hybrid contribution 1.744 0.339 -0.015 1.777 sum 5.235 -15.495 0.006 16.355 Atomic orbital electron populations 1.70057 1.07378 1.29376 1.46685 1.25960 0.95825 1.02879 0.92805 0.85151 0.78419 0.76735 0.79026 1.19151 1.19336 1.19260 1.23939 0.97727 0.93249 1.57987 0.88767 1.84451 1.00640 0.94912 1.78397 1.24215 0.96380 0.96049 0.97883 1.67667 0.98231 1.38812 1.14528 1.21427 0.92173 0.93132 1.02468 1.17862 0.85267 0.75723 0.73959 1.93212 1.90887 1.95313 1.36044 1.93216 1.96818 1.44920 1.81134 1.93201 1.71362 1.68571 1.80773 1.21805 0.99957 0.92856 1.04202 1.21752 0.89038 1.01257 0.90105 1.17881 0.88603 0.91873 1.11112 1.23243 0.94792 0.85812 1.03128 1.76363 0.96089 1.25058 1.17859 1.78964 1.22523 0.88778 1.15563 1.47783 1.03095 1.10291 1.43411 0.64532 1.74777 0.95834 1.20307 1.22238 0.91230 0.79407 0.79151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.54 13.22 21.64 0.29 -52.26 15 2 C 0.03 1.78 5.49 84.85 0.47 2.25 15 3 Si 0.98 44.81 29.55 68.60 2.03 46.83 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 15 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.58 -33.64 9.25 67.94 0.63 -33.01 15 8 H 0.09 5.55 6.54 -2.91 -0.02 5.53 15 9 S 0.16 8.40 18.71 -56.49 -1.06 7.35 15 10 C 0.10 4.69 6.99 85.09 0.60 5.28 15 11 N -0.48 -21.23 8.03 -179.30 -1.44 -22.67 15 12 C 0.06 1.93 6.30 42.58 0.27 2.20 15 13 C 0.53 16.72 3.43 71.24 0.24 16.97 15 14 F -0.17 -5.44 17.30 44.97 0.78 -4.66 15 15 F -0.18 -6.71 17.03 44.97 0.77 -5.95 15 16 F -0.16 -4.02 16.42 44.97 0.74 -3.28 15 17 C -0.16 -4.01 9.41 22.37 0.21 -3.80 15 18 C 0.01 0.18 9.83 22.65 0.22 0.40 15 19 C -0.08 -2.71 5.91 -19.79 -0.12 -2.83 15 20 C 0.21 7.08 7.85 137.30 1.08 8.16 15 21 N -0.28 -10.88 9.73 -52.23 -0.51 -11.39 15 22 N -0.06 -1.91 13.47 37.02 0.50 -1.42 15 23 N -0.19 -3.93 7.90 37.02 0.29 -3.64 15 24 H 0.50 3.99 8.96 -347.53 -3.12 0.87 15 25 N -0.28 -6.86 12.16 -52.18 -0.63 -7.49 15 26 H 0.28 15.05 8.31 -92.71 -0.77 14.28 15 27 H 0.19 2.98 7.58 -2.91 -0.02 2.95 15 28 H 0.19 3.11 7.96 -2.91 -0.02 3.08 15 Total: -1.00 -73.05 288.65 3.51 -69.53 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -1.83 Total: -6.57 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 3.60 Total: -4.39 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -1.51 Total: -98.87 kcal Atomic # 9 Polarization: -16.17 SS G_CDS: 2.28 Total: -13.89 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 8.40 SS G_CDS: -1.06 Total: 7.35 kcal Total: -73.05 3.51 -69.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.517 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds