Wall clock time and date at job start Tue Mar 31 2020 12:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37837 * 120.06331 * 2 1 4 4 C 1.38653 * 120.12595 * 179.77288 * 3 2 1 5 5 F 1.35095 * 119.87798 * 180.25149 * 4 3 2 6 6 C 1.38692 * 120.24307 * 0.50788 * 4 3 2 7 7 S 1.76197 * 119.93389 * 179.76922 * 6 4 3 8 8 O 1.42096 * 106.40596 * 48.26340 * 7 6 4 9 9 O 1.42108 * 106.40423 * 181.18493 * 7 6 4 10 10 N 1.65600 * 107.22069 * 294.72068 * 7 6 4 11 11 C 1.46497 * 120.00428 * 270.00531 * 10 7 6 12 12 C 1.36939 * 119.99907 * 89.99767 * 10 7 6 13 13 H 1.08002 * 119.99743 * 18.26896 * 12 10 7 14 14 C 1.38816 * 120.00104 * 198.26332 * 12 10 7 15 15 N 1.31615 * 119.99951 * 16.35559 * 14 12 10 16 16 Si 1.86805 * 119.99646 * 196.36252 * 14 12 10 17 17 H 1.48495 * 109.47231 * 94.98238 * 16 14 12 18 18 H 1.48501 * 109.46582 * 214.97670 * 16 14 12 19 19 H 1.48493 * 109.47142 * 334.97916 * 16 14 12 20 20 C 1.37794 * 120.12748 * 359.48869 * 6 4 3 21 21 C 1.39686 * 120.06442 * 180.02562 * 2 1 3 22 22 C 1.47601 * 120.12029 * 359.97438 * 21 2 1 23 23 O 1.21490 * 119.99857 * 353.27686 * 22 21 2 24 24 O 1.34728 * 120.00100 * 173.28181 * 22 21 2 25 25 H 1.09006 * 109.46573 * 264.23321 * 1 2 3 26 26 H 1.09003 * 109.47220 * 24.22841 * 1 2 3 27 27 H 1.08996 * 109.47038 * 144.23208 * 1 2 3 28 28 H 1.08002 * 119.93878 * 0.04189 * 3 2 1 29 29 H 1.09003 * 109.47364 * 93.22329 * 11 10 7 30 30 H 1.09003 * 109.47367 * 213.22870 * 11 10 7 31 31 H 1.09000 * 109.47112 * 333.22797 * 11 10 7 32 32 H 0.97003 * 119.99633 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.06473 * 180.23244 * 20 6 4 34 34 H 0.96699 * 117.00490 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1929 0.0000 4 6 3.5840 1.1945 0.0048 5 9 4.2557 2.3666 0.0099 6 6 4.2839 -0.0029 -0.0011 7 16 6.0459 0.0086 -0.0011 8 8 6.4413 0.9137 1.0204 9 8 6.4560 -1.3516 -0.0359 10 7 6.5317 0.6802 -1.4347 11 6 6.7540 -0.1725 -2.6051 12 6 6.7256 2.0327 -1.5263 13 1 6.8540 2.6217 -0.6302 14 6 6.7571 2.6467 -2.7709 15 7 6.2904 2.0162 -3.8277 16 14 7.4622 4.3677 -2.9456 17 1 8.8893 4.2797 -3.3464 18 1 6.7020 5.1110 -3.9824 19 1 7.3556 5.0805 -1.6473 20 6 3.6040 -1.2014 -0.0010 21 6 2.2068 -1.2089 -0.0005 22 6 1.4729 -2.4896 -0.0005 23 8 0.2643 -2.4971 0.1231 24 8 2.1433 -3.6502 -0.1376 25 1 -0.3633 -0.1033 1.0226 26 1 -0.3634 0.9372 -0.4217 27 1 -0.3633 -0.8338 -0.6007 28 1 1.6575 2.1283 0.0007 29 1 5.8428 -0.2154 -3.2017 30 1 7.5634 0.2406 -3.2071 31 1 7.0212 -1.1771 -2.2772 32 1 6.3122 2.4454 -4.6974 33 1 4.1501 -2.1332 -0.0018 34 1 1.6196 -4.4630 -0.1320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607659482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:54 Heat of formation + Delta-G solvation = -188.359400 kcal Electronic energy + Delta-G solvation = -25276.214601 eV Core-core repulsion = 21215.611367 eV Total energy + Delta-G solvation = -4060.603234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.16189 -41.67026 -39.66098 -37.77204 -37.58340 -37.23714 -36.40912 -33.91868 -33.40498 -32.25630 -28.64767 -28.35160 -25.57551 -25.25351 -23.66121 -22.55881 -20.38283 -19.63835 -19.10813 -18.74105 -18.28840 -18.24890 -17.59038 -16.96520 -16.69511 -16.61429 -16.35375 -16.09008 -15.36392 -15.10176 -14.68578 -14.63206 -14.54153 -14.47227 -13.85720 -13.74154 -13.33805 -13.29799 -13.02103 -12.98592 -12.94521 -12.71569 -12.65323 -12.56120 -12.33706 -12.13565 -11.91350 -11.69338 -11.31663 -11.12208 -10.34814 -10.11096 -10.00835 -8.44897 -5.92462 -0.70450 -0.30729 -0.11684 1.20881 1.51010 1.54522 1.64358 1.95049 2.17602 2.30878 2.59285 2.85723 2.95856 3.12150 3.40701 3.62178 3.75738 4.05276 4.17307 4.28269 4.45649 4.55631 4.62609 4.68711 4.73143 4.78642 5.00931 5.05790 5.19408 5.22428 5.34989 5.46281 5.55422 5.61388 6.36851 6.71026 6.91833 7.18600 8.52183 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.005250 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.023251 B = 5331.813858 C = 5856.999508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.043 3.957 3 C -0.188 4.188 4 C 0.213 3.787 5 F -0.120 7.120 6 C -0.741 4.741 7 S 2.523 3.477 8 O -1.007 7.007 9 O -1.011 7.011 10 N -0.807 5.807 11 C 0.125 3.875 12 C -0.254 4.254 13 H 0.109 0.891 14 C 0.002 3.998 15 N -0.847 5.847 16 Si 0.988 3.012 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.263 1.263 20 C 0.047 3.953 21 C -0.185 4.185 22 C 0.541 3.459 23 O -0.521 6.521 24 O -0.506 6.506 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.178 0.822 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.284 0.716 33 H 0.158 0.842 34 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 -3.347 0.971 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.042 3.958 3 C -0.207 4.207 4 C 0.192 3.808 5 F -0.098 7.098 6 C -0.820 4.820 7 S 2.623 3.377 8 O -0.997 6.997 9 O -1.000 7.000 10 N -0.631 5.631 11 C -0.020 4.020 12 C -0.403 4.403 13 H 0.126 0.874 14 C -0.209 4.209 15 N -0.487 5.487 16 Si 0.810 3.190 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.187 1.187 20 C 0.028 3.972 21 C -0.187 4.187 22 C 0.387 3.613 23 O -0.413 6.413 24 O -0.321 6.321 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.195 0.805 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -9.286 -3.542 1.664 10.077 hybrid contribution -0.469 0.412 -0.330 0.706 sum -9.755 -3.131 1.335 10.331 Atomic orbital electron populations 1.21265 0.86612 1.05034 1.04725 1.20308 0.98471 0.89763 0.87215 1.21344 0.90876 1.00886 1.07558 1.17729 0.91113 0.80155 0.91777 1.91623 1.80731 1.45310 1.92117 1.32244 1.33741 0.97379 1.18634 1.12180 0.75381 0.72879 0.77297 1.93322 1.82338 1.64690 1.59364 1.93289 1.82298 1.36571 1.87880 1.54476 1.64653 1.14559 1.29412 1.21354 1.02046 0.91538 0.87098 1.20256 1.40557 0.83950 0.95534 0.87357 1.26442 0.96309 1.03281 0.94910 1.70180 1.38364 1.39358 1.00759 0.84969 0.78691 0.76425 0.78914 1.18960 1.19597 1.18712 1.21136 0.93294 0.96880 0.85876 1.19246 0.93190 0.91847 1.14385 1.20319 0.84775 0.84269 0.71903 1.90818 1.15195 1.87915 1.47395 1.84575 1.45634 1.17517 1.84326 0.88702 0.88927 0.88913 0.80464 0.93583 0.90597 0.92404 0.90599 0.82494 0.70070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 8.75 71.24 0.62 -1.97 16 2 C 0.04 1.24 5.91 -19.61 -0.12 1.13 16 3 C -0.19 -5.84 9.64 22.27 0.21 -5.62 16 4 C 0.21 8.54 7.22 22.48 0.16 8.70 16 5 F -0.12 -5.25 15.04 44.97 0.68 -4.57 16 6 C -0.74 -31.37 5.91 22.27 0.13 -31.24 16 7 S 2.52 121.64 5.30 -56.49 -0.30 121.34 16 8 O -1.01 -53.84 16.18 -128.00 -2.07 -55.91 16 9 O -1.01 -49.66 15.53 -128.00 -1.99 -51.65 16 10 N -0.81 -39.20 3.31 -364.89 -1.21 -40.41 16 11 C 0.13 5.58 8.93 127.77 1.14 6.72 16 12 C -0.25 -12.58 8.28 84.03 0.70 -11.88 16 13 H 0.11 5.54 7.15 -2.91 -0.02 5.52 16 14 C 0.00 0.09 5.03 84.86 0.43 0.52 16 15 N -0.85 -39.53 10.64 21.65 0.23 -39.30 16 16 Si 0.99 36.80 29.58 68.60 2.03 38.83 16 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 C 0.05 1.75 9.11 22.52 0.21 1.95 16 21 C -0.18 -5.84 5.87 -20.10 -0.12 -5.95 16 22 C 0.54 14.57 8.19 70.29 0.58 15.15 16 23 O -0.52 -14.33 14.12 19.87 0.28 -14.05 16 24 O -0.51 -10.89 12.70 -56.38 -0.72 -11.60 16 25 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 27 H 0.09 2.15 5.81 -2.39 -0.01 2.13 16 28 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 29 H 0.05 2.05 7.56 -2.39 -0.02 2.03 16 30 H 0.08 3.38 6.97 -2.39 -0.02 3.36 16 31 H 0.06 2.40 6.95 -2.39 -0.02 2.38 16 32 H 0.28 12.20 8.31 -92.71 -0.77 11.43 16 33 H 0.16 5.61 6.89 -2.91 -0.02 5.59 16 34 H 0.44 4.38 9.11 -74.06 -0.67 3.71 16 Total: -1.00 -64.42 309.59 1.38 -63.04 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.51 Total: 16.79 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.94 Total: -22.49 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -0.98 Total: -79.71 kcal Atomic # 8 Polarization: -128.72 SS G_CDS: -4.49 Total: -133.22 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.68 Total: -4.57 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: 121.64 SS G_CDS: -0.30 Total: 121.34 kcal Total: -64.42 1.38 -63.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607659482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.321 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds