Wall clock time and date at job start Tue Mar 31 2020 12:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38259 * 119.82316 * 2 1 4 4 C 1.38265 * 120.12090 * 180.29377 * 3 2 1 5 5 F 1.35101 * 120.11216 * 179.75101 * 4 3 2 6 6 C 1.39916 * 119.77696 * 359.72691 * 4 3 2 7 7 C 1.47561 * 120.17571 * 179.97438 * 6 4 3 8 8 O 1.21491 * 119.99996 * 0.02562 * 7 6 4 9 9 O 1.34729 * 120.00131 * 180.02562 * 7 6 4 10 10 C 1.39684 * 119.65328 * 359.97438 * 6 4 3 11 11 C 1.37874 * 119.86988 * 0.02562 * 10 6 4 12 12 S 1.76207 * 119.88481 * 179.97438 * 11 10 6 13 13 O 1.42094 * 106.39982 * 358.19220 * 12 11 10 14 14 O 1.42098 * 106.40166 * 131.11184 * 12 11 10 15 15 N 1.65602 * 107.21827 * 244.65004 * 12 11 10 16 16 C 1.46495 * 119.99728 * 64.12198 * 15 12 11 17 17 C 1.50700 * 109.47035 * 165.04009 * 16 15 12 18 18 H 1.08002 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99788 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47075 * 59.99856 * 21 19 17 23 23 H 1.48500 * 109.47061 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47075 * 299.99901 * 21 19 17 25 25 H 1.08989 * 109.47083 * 264.67870 * 1 2 3 26 26 H 1.09000 * 109.47338 * 24.68258 * 1 2 3 27 27 H 1.09005 * 109.46723 * 144.67836 * 1 2 3 28 28 H 1.08005 * 119.93673 * 0.02562 * 3 2 1 29 29 H 0.96708 * 117.00182 * 179.97438 * 9 7 6 30 30 H 1.07994 * 120.06326 * 180.02562 * 10 6 4 31 31 H 0.96998 * 120.00117 * 244.12229 * 15 12 11 32 32 H 1.09007 * 109.47599 * 285.03441 * 16 15 12 33 33 H 1.09000 * 109.47974 * 45.03817 * 16 15 12 34 34 H 0.97000 * 120.00144 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1995 0.0000 4 6 3.5772 1.2067 -0.0061 5 9 4.2489 2.3789 -0.0112 6 6 4.2784 -0.0041 -0.0065 7 6 5.7540 -0.0067 -0.0136 8 8 6.3633 1.0444 -0.0187 9 8 6.4256 -1.1747 -0.0145 10 6 3.5743 -1.2105 -0.0002 11 6 2.1956 -1.2008 0.0059 12 16 1.3070 -2.7224 0.0132 13 8 2.2809 -3.7560 -0.0319 14 8 0.3352 -2.6145 1.0443 15 7 0.4686 -2.8073 -1.4125 16 6 1.1920 -2.8744 -2.6846 17 6 0.2485 -3.3086 -3.7766 18 1 -0.7865 -3.5136 -3.5461 19 6 0.7064 -3.4431 -5.0702 20 7 1.9664 -3.1920 -5.3512 21 14 -0.4629 -3.9820 -6.4236 22 1 -1.5743 -3.0034 -6.5363 23 1 0.2699 -4.0487 -7.7134 24 1 -1.0143 -5.3217 -6.0971 25 1 -0.3633 -0.0953 1.0231 26 1 -0.3634 0.9338 -0.4291 27 1 -0.3633 -0.8385 -0.5942 28 1 1.6507 2.1326 0.0004 29 1 7.3915 -1.1258 -0.0197 30 1 4.1088 -2.1489 -0.0001 31 1 -0.5013 -2.8126 -1.4052 32 1 1.5974 -1.8914 -2.9245 33 1 2.0072 -3.5932 -2.6018 34 1 2.2886 -3.2870 -6.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607661288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:34 Heat of formation + Delta-G solvation = -186.386689 kcal Electronic energy + Delta-G solvation = -24571.921772 eV Core-core repulsion = 20511.404081 eV Total energy + Delta-G solvation = -4060.517691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.26265 -40.45689 -39.07248 -36.93699 -36.20455 -35.50909 -34.84557 -33.25376 -32.22957 -31.19169 -28.19690 -26.82706 -23.74879 -23.50122 -22.60677 -21.73469 -19.25325 -18.42694 -17.86458 -17.55858 -17.25717 -16.82585 -16.25810 -15.98814 -15.80094 -15.40910 -15.38774 -14.64317 -14.54600 -13.99261 -13.74068 -13.57775 -13.47750 -13.23989 -12.71568 -12.34587 -12.21890 -12.13403 -11.92239 -11.85089 -11.71434 -11.66985 -11.59664 -11.02960 -10.95628 -10.83802 -10.63414 -10.19509 -9.53032 -9.40928 -9.27802 -9.00570 -8.33832 -6.23774 -4.29438 0.17509 0.61364 0.82366 2.17192 2.74203 3.10460 3.22636 3.28137 3.29218 3.51132 3.72077 4.02459 4.18763 4.29146 4.48582 4.60888 4.94319 5.01438 5.11440 5.14009 5.18500 5.44937 5.48428 5.63608 5.67343 5.90492 5.94185 6.27821 6.30276 6.38565 7.18318 7.23590 7.65171 7.70727 7.72909 8.07595 8.74186 9.36106 10.86327 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.004624 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.366412 B = 6053.757279 C = 6670.936955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.089 3.911 3 C -0.192 4.192 4 C 0.217 3.783 5 F -0.108 7.108 6 C -0.198 4.198 7 C 0.533 3.467 8 O -0.507 6.507 9 O -0.504 6.504 10 C 0.075 3.925 11 C -0.702 4.702 12 S 2.694 3.306 13 O -0.957 6.957 14 O -0.971 6.971 15 N -1.101 6.101 16 C 0.245 3.755 17 C -0.532 4.532 18 H 0.066 0.934 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.418 0.582 30 H 0.169 0.831 31 H 0.412 0.588 32 H 0.022 0.978 33 H 0.040 0.960 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 7.210 10.839 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.088 3.912 3 C -0.212 4.212 4 C 0.197 3.803 5 F -0.086 7.086 6 C -0.201 4.201 7 C 0.377 3.623 8 O -0.396 6.396 9 O -0.316 6.316 10 C 0.056 3.944 11 C -0.785 4.785 12 S 2.780 3.220 13 O -0.946 6.946 14 O -0.961 6.961 15 N -0.864 5.864 16 C 0.122 3.878 17 C -0.572 4.572 18 H 0.085 0.915 19 C -0.141 4.141 20 N -0.526 5.526 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.125 0.875 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.172 0.828 29 H 0.277 0.723 30 H 0.187 0.813 31 H 0.247 0.753 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.657 6.942 11.337 13.397 hybrid contribution 0.238 0.793 -1.257 1.506 sum 1.895 7.735 10.080 12.846 Atomic orbital electron populations 1.21451 0.88895 1.05478 1.05224 1.19652 0.96729 0.90613 0.84206 1.21070 0.91380 1.00059 1.08666 1.17808 0.89969 0.80210 0.92341 1.91622 1.80384 1.44640 1.91980 1.19082 0.90395 0.93757 1.16906 1.20368 0.88044 0.81392 0.72477 1.90943 1.69830 1.32750 1.46105 1.84575 1.27054 1.34357 1.85645 1.21218 0.91992 0.98234 0.82973 1.31268 1.06057 1.21442 1.19768 1.01963 0.73562 0.73460 0.73047 1.93572 1.62271 1.52193 1.86612 1.93559 1.59727 1.87104 1.55679 1.55515 1.18216 1.89939 1.22776 1.19124 0.92855 0.97287 0.78490 1.21121 0.96265 1.47596 0.92198 0.91548 1.24971 0.95398 0.95007 0.98733 1.69921 1.14201 1.47801 1.20727 0.86469 0.80524 0.79323 0.80574 1.20087 1.21125 1.19970 0.87549 0.89247 0.89489 0.82771 0.72330 0.81345 0.75277 0.95978 0.94179 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.60 36.01 0.31 -1.39 16 2 C 0.09 1.18 5.88 -104.54 -0.61 0.57 16 3 C -0.19 -2.34 9.64 -39.56 -0.38 -2.72 16 4 C 0.22 3.04 7.29 -38.94 -0.28 2.76 16 5 F -0.11 -1.59 15.55 2.25 0.04 -1.55 16 6 C -0.20 -2.92 5.88 -104.93 -0.62 -3.54 16 7 C 0.53 7.61 8.27 34.53 0.29 7.89 16 8 O -0.51 -8.29 16.13 -19.26 -0.31 -8.61 16 9 O -0.50 -5.66 12.68 -40.57 -0.51 -6.17 16 10 C 0.08 1.13 9.11 -39.17 -0.36 0.77 16 11 C -0.70 -10.67 5.86 -39.65 -0.23 -10.90 16 12 S 2.69 45.59 4.94 -107.50 -0.53 45.06 16 13 O -0.96 -18.95 16.46 -57.17 -0.94 -19.89 16 14 O -0.97 -16.51 16.50 -57.17 -0.94 -17.45 16 15 N -1.10 -19.98 4.75 -11.66 -0.06 -20.03 16 16 C 0.25 5.66 5.97 -5.20 -0.03 5.63 16 17 C -0.53 -13.46 9.27 -34.44 -0.32 -13.78 16 18 H 0.07 1.58 7.65 -52.49 -0.40 1.18 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 21 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H 0.11 1.06 8.00 -51.94 -0.42 0.64 16 26 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 27 H 0.09 1.04 5.38 -51.93 -0.28 0.76 16 28 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.42 2.54 9.11 45.56 0.42 2.95 16 30 H 0.17 2.43 6.87 -52.49 -0.36 2.06 16 31 H 0.41 6.59 8.14 -34.47 -0.28 6.31 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -33.18 317.85 -7.22 -40.39 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.12 Total: 5.45 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.34 Total: -13.16 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.68 Total: -43.89 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.71 Total: -52.12 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 45.59 SS G_CDS: -0.53 Total: 45.06 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.18 -7.22 -40.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607661288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.993 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds