Wall clock time and date at job start Tue Mar 31 2020 12:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38259 * 119.82316 * 2 1 4 4 C 1.38265 * 120.12090 * 180.29377 * 3 2 1 5 5 F 1.35101 * 120.11216 * 179.75101 * 4 3 2 6 6 C 1.39916 * 119.77696 * 359.72691 * 4 3 2 7 7 C 1.47561 * 120.17571 * 179.97438 * 6 4 3 8 8 O 1.21491 * 119.99996 * 0.02562 * 7 6 4 9 9 O 1.34729 * 120.00131 * 180.02562 * 7 6 4 10 10 C 1.39684 * 119.65328 * 359.97438 * 6 4 3 11 11 C 1.37874 * 119.86988 * 0.02562 * 10 6 4 12 12 S 1.76207 * 119.88481 * 179.97438 * 11 10 6 13 13 O 1.42094 * 106.39982 * 358.19220 * 12 11 10 14 14 O 1.42098 * 106.40166 * 131.11184 * 12 11 10 15 15 N 1.65602 * 107.21827 * 244.65004 * 12 11 10 16 16 C 1.46495 * 119.99728 * 64.12198 * 15 12 11 17 17 C 1.50700 * 109.47035 * 165.04009 * 16 15 12 18 18 H 1.08002 * 120.00124 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99919 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00380 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99788 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47075 * 59.99856 * 21 19 17 23 23 H 1.48500 * 109.47061 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47075 * 299.99901 * 21 19 17 25 25 H 1.08989 * 109.47083 * 264.67870 * 1 2 3 26 26 H 1.09000 * 109.47338 * 24.68258 * 1 2 3 27 27 H 1.09005 * 109.46723 * 144.67836 * 1 2 3 28 28 H 1.08005 * 119.93673 * 0.02562 * 3 2 1 29 29 H 0.96708 * 117.00182 * 179.97438 * 9 7 6 30 30 H 1.07994 * 120.06326 * 180.02562 * 10 6 4 31 31 H 0.96998 * 120.00117 * 244.12229 * 15 12 11 32 32 H 1.09007 * 109.47599 * 285.03441 * 16 15 12 33 33 H 1.09000 * 109.47974 * 45.03817 * 16 15 12 34 34 H 0.97000 * 120.00144 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1995 0.0000 4 6 3.5772 1.2067 -0.0061 5 9 4.2489 2.3789 -0.0112 6 6 4.2784 -0.0041 -0.0065 7 6 5.7540 -0.0067 -0.0136 8 8 6.3633 1.0444 -0.0187 9 8 6.4256 -1.1747 -0.0145 10 6 3.5743 -1.2105 -0.0002 11 6 2.1956 -1.2008 0.0059 12 16 1.3070 -2.7224 0.0132 13 8 2.2809 -3.7560 -0.0319 14 8 0.3352 -2.6145 1.0443 15 7 0.4686 -2.8073 -1.4125 16 6 1.1920 -2.8744 -2.6846 17 6 0.2485 -3.3086 -3.7766 18 1 -0.7865 -3.5136 -3.5461 19 6 0.7064 -3.4431 -5.0702 20 7 1.9664 -3.1920 -5.3512 21 14 -0.4629 -3.9820 -6.4236 22 1 -1.5743 -3.0034 -6.5363 23 1 0.2699 -4.0487 -7.7134 24 1 -1.0143 -5.3217 -6.0971 25 1 -0.3633 -0.0953 1.0231 26 1 -0.3634 0.9338 -0.4291 27 1 -0.3633 -0.8385 -0.5942 28 1 1.6507 2.1326 0.0004 29 1 7.3915 -1.1258 -0.0197 30 1 4.1088 -2.1489 -0.0001 31 1 -0.5013 -2.8126 -1.4052 32 1 1.5974 -1.8914 -2.9245 33 1 2.0072 -3.5932 -2.6018 34 1 2.2886 -3.2870 -6.2612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607661288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:33 Heat of formation + Delta-G solvation = -211.332813 kcal Electronic energy + Delta-G solvation = -24573.003517 eV Core-core repulsion = 20511.404081 eV Total energy + Delta-G solvation = -4061.599436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.37115 -41.54379 -40.14754 -38.37090 -37.25598 -36.96132 -36.54105 -34.41587 -34.00572 -32.29396 -29.22384 -28.66686 -24.79467 -24.61644 -24.47139 -22.82779 -20.60217 -19.62388 -19.17068 -18.91613 -18.46535 -18.02779 -17.64511 -17.32338 -17.02181 -16.98866 -16.48065 -16.28311 -15.58457 -15.31484 -14.92351 -14.82191 -14.55947 -14.39035 -14.29839 -14.05267 -13.60666 -13.31193 -13.22538 -13.16693 -12.95271 -12.91648 -12.72299 -12.70710 -12.54349 -12.20074 -12.05598 -11.82629 -11.41104 -10.81935 -10.51412 -10.33941 -10.11274 -8.21900 -6.33643 -0.93720 -0.62651 -0.41726 1.08528 1.48424 1.50196 1.57771 1.76041 1.93817 2.15375 2.44862 2.64289 2.68380 3.13079 3.14412 3.38107 3.50982 3.82512 3.96719 4.06044 4.25504 4.40373 4.51102 4.59706 4.63305 4.70262 4.96081 5.06586 5.30468 5.32896 5.34438 5.38539 5.77061 5.99256 6.33629 6.77980 6.80992 7.36346 8.88725 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.004624 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.366412 B = 6053.757279 C = 6670.936955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.089 3.911 3 C -0.178 4.178 4 C 0.209 3.791 5 F -0.113 7.113 6 C -0.213 4.213 7 C 0.537 3.463 8 O -0.533 6.533 9 O -0.499 6.499 10 C 0.066 3.934 11 C -0.713 4.713 12 S 2.712 3.288 13 O -0.990 6.990 14 O -0.968 6.968 15 N -1.097 6.097 16 C 0.258 3.742 17 C -0.545 4.545 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.927 5.927 21 Si 0.970 3.030 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.269 1.269 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.194 0.806 29 H 0.439 0.561 30 H 0.166 0.834 31 H 0.422 0.578 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 8.182 10.969 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.087 3.913 3 C -0.196 4.196 4 C 0.189 3.811 5 F -0.090 7.090 6 C -0.216 4.216 7 C 0.382 3.618 8 O -0.425 6.425 9 O -0.314 6.314 10 C 0.046 3.954 11 C -0.800 4.800 12 S 2.801 3.199 13 O -0.981 6.981 14 O -0.959 6.959 15 N -0.860 5.860 16 C 0.134 3.866 17 C -0.585 4.585 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.194 1.194 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.094 0.906 28 H 0.211 0.789 29 H 0.302 0.698 30 H 0.184 0.816 31 H 0.259 0.741 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.038 7.866 11.488 13.923 hybrid contribution 0.794 0.514 -1.207 1.534 sum 0.756 8.380 10.281 13.285 Atomic orbital electron populations 1.21634 0.87047 1.06830 1.06168 1.20002 0.98070 0.90088 0.83112 1.21441 0.90557 1.01185 1.06452 1.18053 0.90809 0.79807 0.92467 1.91612 1.80664 1.44732 1.92037 1.19229 0.90866 0.94038 1.17444 1.20353 0.88069 0.81567 0.71847 1.90926 1.70278 1.33657 1.47607 1.84543 1.29026 1.32957 1.84866 1.21218 0.92143 0.98452 0.83544 1.30956 1.06040 1.21189 1.21799 1.01192 0.72953 0.73411 0.72357 1.93529 1.63127 1.54523 1.86879 1.93554 1.59850 1.87348 1.55109 1.55266 1.18769 1.90405 1.21553 1.18679 0.92164 0.95773 0.80018 1.21591 0.97180 1.46826 0.92863 0.90284 1.25861 0.96834 0.95135 1.01308 1.70050 1.16093 1.49316 1.21173 0.85429 0.78599 0.79187 0.77360 1.18766 1.21389 1.19427 0.86146 0.85996 0.90573 0.78911 0.69814 0.81615 0.74069 0.96854 0.97098 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.60 71.24 0.61 -2.44 16 2 C 0.09 2.16 5.88 -19.81 -0.12 2.04 16 3 C -0.18 -3.83 9.64 22.28 0.21 -3.62 16 4 C 0.21 5.59 7.29 22.68 0.17 5.75 16 5 F -0.11 -3.17 15.55 44.97 0.70 -2.47 16 6 C -0.21 -6.21 5.88 -20.06 -0.12 -6.33 16 7 C 0.54 15.28 8.27 70.28 0.58 15.86 16 8 O -0.53 -17.39 16.13 19.87 0.32 -17.07 16 9 O -0.50 -11.06 12.68 -56.40 -0.72 -11.77 16 10 C 0.07 1.99 9.11 22.53 0.21 2.19 16 11 C -0.71 -21.25 5.86 22.23 0.13 -21.12 16 12 S 2.71 91.15 4.94 -56.49 -0.28 90.88 16 13 O -0.99 -40.07 16.46 -128.00 -2.11 -42.18 16 14 O -0.97 -31.76 16.50 -128.00 -2.11 -33.88 16 15 N -1.10 -39.42 4.75 -190.79 -0.91 -40.33 16 16 C 0.26 12.05 5.97 85.63 0.51 12.56 16 17 C -0.55 -27.37 9.27 25.60 0.24 -27.13 16 18 H 0.08 3.66 7.65 -2.91 -0.02 3.64 16 19 C 0.01 0.45 5.46 84.66 0.46 0.91 16 20 N -0.93 -51.91 13.29 21.45 0.28 -51.63 16 21 Si 0.97 40.59 29.54 68.60 2.03 42.61 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 H 0.12 1.99 8.00 -2.39 -0.02 1.97 16 26 H 0.12 1.52 8.05 -2.39 -0.02 1.50 16 27 H 0.08 1.64 5.38 -2.38 -0.01 1.63 16 28 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.44 5.02 9.11 -74.05 -0.67 4.34 16 30 H 0.17 4.95 6.87 -2.91 -0.02 4.93 16 31 H 0.42 13.08 8.14 -96.75 -0.79 12.29 16 32 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.01 0.58 7.77 -2.39 -0.02 0.56 16 34 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -70.83 317.85 -0.17 -71.00 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.27 Total: 16.16 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 2.89 Total: -21.32 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -0.62 Total: -91.95 kcal Atomic # 8 Polarization: -100.29 SS G_CDS: -4.61 Total: -104.90 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.70 Total: -2.47 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 91.15 SS G_CDS: -0.28 Total: 90.88 kcal Total: -70.83 -0.17 -71.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607661288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.337 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds