Wall clock time and date at job start Tue Mar 31 2020 11:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48496 * 109.46949 * 184.67683 * 3 2 1 5 5 H 1.48494 * 109.47555 * 304.68073 * 3 2 1 6 6 H 1.48506 * 109.47003 * 64.68215 * 3 2 1 7 7 C 1.38807 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99682 * 26.61916 * 7 2 1 9 9 N 1.36932 * 120.00323 * 206.90008 * 7 2 1 10 10 C 1.46502 * 119.99790 * 33.07320 * 9 7 2 11 11 C 1.53001 * 109.46980 * 92.63695 * 10 9 7 12 12 C 1.50700 * 109.47103 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00110 * 0.02562 * 12 11 10 14 14 O 1.34226 * 119.99869 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00239 * 213.08090 * 9 7 2 16 16 C 1.50700 * 109.47693 * 89.99327 * 15 9 7 17 17 C 1.38260 * 119.98086 * 269.73052 * 16 15 9 18 18 C 1.38209 * 120.03496 * 179.76341 * 17 16 15 19 19 C 1.38342 * 120.00267 * 0.50389 * 18 17 16 20 20 Cl 1.73605 * 120.02141 * 179.72434 * 19 18 17 21 21 C 1.38444 * 119.96263 * 359.75102 * 19 18 17 22 22 Cl 1.73593 * 120.02335 * 180.02562 * 21 19 18 23 23 C 1.38204 * 119.97880 * 89.99765 * 16 15 9 24 24 H 0.96997 * 120.00704 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46999 * 212.63701 * 10 9 7 26 26 H 1.09002 * 109.46997 * 332.63375 * 10 9 7 27 27 H 1.09001 * 109.46884 * 300.00233 * 11 10 9 28 28 H 1.09001 * 109.46779 * 60.00016 * 11 10 9 29 29 H 0.96705 * 117.00039 * 180.02562 * 14 12 11 30 30 H 1.08999 * 109.47020 * 209.99573 * 15 9 7 31 31 H 1.08997 * 109.46931 * 329.99518 * 15 9 7 32 32 H 1.08005 * 119.98577 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.99766 * 180.25012 * 18 17 16 34 34 H 1.07999 * 120.00376 * 359.96027 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7062 1.3486 -0.1142 5 1 1.8079 2.4447 -1.1512 6 1 1.9792 2.3457 1.2657 7 6 2.0102 -1.2021 -0.0005 8 1 1.5560 -2.0877 -0.4200 9 7 3.2684 -1.2667 0.5359 10 6 3.6204 -0.4237 1.6813 11 6 3.3678 -1.1946 2.9786 12 6 3.7305 -0.3278 4.1567 13 8 4.1477 0.7918 3.9773 14 8 3.5890 -0.7992 5.4055 15 6 4.2626 -2.1784 -0.0355 16 6 5.0336 -1.4670 -1.1173 17 6 4.5887 -1.5108 -2.4257 18 6 5.2923 -0.8547 -3.4180 19 6 6.4481 -0.1623 -3.1041 20 17 7.3362 0.6560 -4.3513 21 6 6.8965 -0.1228 -1.7949 22 17 8.3463 0.7461 -1.3992 23 6 6.1881 -0.7758 -0.8020 24 1 -0.4851 -0.8400 -0.0004 25 1 4.6737 -0.1497 1.6207 26 1 3.0091 0.4786 1.6698 27 1 2.3145 -1.4686 3.0391 28 1 3.9792 -2.0969 2.9899 29 1 3.8343 -0.2062 6.1290 30 1 4.9491 -2.5035 0.7462 31 1 3.7579 -3.0463 -0.4599 32 1 3.6890 -2.0552 -2.6719 33 1 4.9420 -0.8860 -4.4391 34 1 6.5371 -0.7450 0.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:15 Heat of formation + Delta-G solvation = -66.304855 kcal Electronic energy + Delta-G solvation = -21949.577844 eV Core-core repulsion = 18320.559961 eV Total energy + Delta-G solvation = -3629.017883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.94942 -39.26777 -36.83173 -36.35067 -36.11519 -35.65520 -32.24647 -31.79231 -30.65081 -29.61822 -26.02451 -24.67330 -22.66025 -22.16803 -20.99764 -20.12577 -17.93892 -17.40596 -16.94632 -16.27225 -15.96207 -15.65694 -15.42817 -14.67857 -14.28405 -13.95300 -13.69303 -13.63316 -13.38748 -12.97017 -12.64818 -12.25517 -11.78349 -11.74488 -11.68878 -11.48245 -11.30233 -11.09989 -10.94061 -10.86692 -10.78019 -10.68345 -10.27317 -10.21663 -9.73823 -9.36908 -8.71402 -8.62924 -8.34569 -7.30033 -6.48987 -3.58275 1.25451 1.39041 2.01880 2.39849 2.51671 3.32267 3.43802 3.51435 3.63515 3.76106 4.45548 4.84315 4.92413 5.14003 5.23203 5.38125 5.45413 5.51800 5.54048 5.59491 5.82459 5.84682 6.01238 6.09946 6.19154 6.31603 6.38643 6.40444 6.60047 6.76180 6.85926 6.93544 7.86667 8.15009 8.25712 8.80513 9.35918 9.94335 10.87708 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.004981 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.468637 B = 5620.072466 C = 6610.121907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 1.038 2.962 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.289 1.289 7 C -0.363 4.363 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.160 3.840 11 C -0.132 4.132 12 C 0.478 3.522 13 O -0.520 6.520 14 O -0.524 6.524 15 C 0.175 3.825 16 C -0.066 4.066 17 C -0.084 4.084 18 C -0.101 4.101 19 C -0.047 4.047 20 Cl -0.069 7.069 21 C -0.030 4.030 22 Cl -0.067 7.067 23 C -0.099 4.099 24 H 0.269 0.731 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.401 0.599 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -4.229 -0.015 12.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.197 4.197 3 Si 0.868 3.132 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.216 1.216 7 C -0.491 4.491 8 H 0.087 0.913 9 N -0.305 5.305 10 C 0.034 3.966 11 C -0.173 4.173 12 C 0.321 3.679 13 O -0.408 6.408 14 O -0.335 6.335 15 C 0.049 3.951 16 C -0.070 4.070 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.074 4.074 20 Cl -0.040 7.040 21 C -0.058 4.058 22 Cl -0.038 7.038 23 C -0.119 4.119 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.259 0.741 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.113 -2.421 -0.463 12.361 hybrid contribution 0.493 -0.785 0.350 0.991 sum 12.605 -3.206 -0.112 13.007 Atomic orbital electron populations 1.70903 1.06568 1.30166 1.45585 1.26173 0.96226 1.01240 0.96109 0.84049 0.76268 0.76297 0.76553 1.20208 1.22557 1.21640 1.20069 0.89934 0.96060 1.43011 0.91282 1.44284 1.09401 1.47822 1.28982 1.20903 0.98806 0.92872 0.84059 1.22245 1.05345 0.99298 0.90386 1.24066 0.73253 0.86762 0.83841 1.90698 1.42801 1.21176 1.86163 1.84606 1.80886 1.50680 1.17337 1.20152 0.90506 0.92817 0.91588 1.21193 0.92377 0.97240 0.96219 1.21143 0.98920 0.98420 0.91807 1.21010 0.93131 0.97109 1.00754 1.20610 0.96544 1.02188 0.88103 1.98347 1.75151 1.77964 1.52545 1.20710 0.91559 1.00484 0.93011 1.98352 1.35986 1.75311 1.94154 1.20905 0.95104 0.97595 0.98247 0.92072 0.93042 0.92298 0.87084 0.88466 0.74093 0.92717 0.91425 0.84457 0.84653 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 13.71 55.49 0.76 -25.10 16 2 C 0.01 0.22 5.23 -17.43 -0.09 0.13 16 3 Si 1.04 25.92 25.43 -169.99 -4.32 21.60 16 4 H -0.28 -6.63 6.57 56.52 0.37 -6.26 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.36 -8.92 9.77 -15.06 -0.15 -9.07 16 8 H 0.07 1.80 8.06 -52.48 -0.42 1.38 16 9 N -0.59 -12.08 2.13 -174.61 -0.37 -12.45 16 10 C 0.16 3.21 3.44 -4.04 -0.01 3.19 16 11 C -0.13 -2.21 6.13 -27.88 -0.17 -2.38 16 12 C 0.48 7.79 8.33 36.01 0.30 8.09 16 13 O -0.52 -10.07 16.74 -18.75 -0.31 -10.39 16 14 O -0.52 -6.69 13.42 -39.25 -0.53 -7.22 16 15 C 0.18 2.93 5.80 -5.20 -0.03 2.90 16 16 C -0.07 -1.10 5.46 -104.63 -0.57 -1.67 16 17 C -0.08 -1.33 9.70 -39.58 -0.38 -1.72 16 18 C -0.10 -1.51 9.83 -39.55 -0.39 -1.90 16 19 C -0.05 -0.72 6.32 -39.47 -0.25 -0.97 16 20 Cl -0.07 -0.96 27.96 -51.86 -1.45 -2.41 16 21 C -0.03 -0.48 6.32 -39.46 -0.25 -0.73 16 22 Cl -0.07 -0.97 27.96 -51.86 -1.45 -2.42 16 23 C -0.10 -1.58 9.48 -39.55 -0.38 -1.96 16 24 H 0.27 7.60 8.73 -40.82 -0.36 7.24 16 25 H 0.05 0.98 8.05 -51.93 -0.42 0.56 16 26 H 0.06 1.36 3.44 -51.93 -0.18 1.19 16 27 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 28 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.40 3.29 9.10 45.56 0.41 3.70 16 30 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 31 H 0.07 1.09 7.98 -51.93 -0.41 0.68 16 32 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -29.90 327.81 -7.84 -37.74 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.73 Total: 1.79 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.37 Total: -6.07 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.39 Total: -37.55 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.84 Total: -17.60 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.32 Total: 21.60 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -2.90 Total: -4.84 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.90 -7.84 -37.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.563 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds