Wall clock time and date at job start Tue Mar 31 2020 11:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00126 * 2 1 4 4 H 1.48496 * 109.46949 * 184.67683 * 3 2 1 5 5 H 1.48494 * 109.47555 * 304.68073 * 3 2 1 6 6 H 1.48506 * 109.47003 * 64.68215 * 3 2 1 7 7 C 1.38807 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99682 * 26.61916 * 7 2 1 9 9 N 1.36932 * 120.00323 * 206.90008 * 7 2 1 10 10 C 1.46502 * 119.99790 * 33.07320 * 9 7 2 11 11 C 1.53001 * 109.46980 * 92.63695 * 10 9 7 12 12 C 1.50700 * 109.47103 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00110 * 0.02562 * 12 11 10 14 14 O 1.34226 * 119.99869 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00239 * 213.08090 * 9 7 2 16 16 C 1.50700 * 109.47693 * 89.99327 * 15 9 7 17 17 C 1.38260 * 119.98086 * 269.73052 * 16 15 9 18 18 C 1.38209 * 120.03496 * 179.76341 * 17 16 15 19 19 C 1.38342 * 120.00267 * 0.50389 * 18 17 16 20 20 Cl 1.73605 * 120.02141 * 179.72434 * 19 18 17 21 21 C 1.38444 * 119.96263 * 359.75102 * 19 18 17 22 22 Cl 1.73593 * 120.02335 * 180.02562 * 21 19 18 23 23 C 1.38204 * 119.97880 * 89.99765 * 16 15 9 24 24 H 0.96997 * 120.00704 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46999 * 212.63701 * 10 9 7 26 26 H 1.09002 * 109.46997 * 332.63375 * 10 9 7 27 27 H 1.09001 * 109.46884 * 300.00233 * 11 10 9 28 28 H 1.09001 * 109.46779 * 60.00016 * 11 10 9 29 29 H 0.96705 * 117.00039 * 180.02562 * 14 12 11 30 30 H 1.08999 * 109.47020 * 209.99573 * 15 9 7 31 31 H 1.08997 * 109.46931 * 329.99518 * 15 9 7 32 32 H 1.08005 * 119.98577 * 359.97438 * 17 16 15 33 33 H 1.07999 * 119.99766 * 180.25012 * 18 17 16 34 34 H 1.07999 * 120.00376 * 359.96027 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7062 1.3486 -0.1142 5 1 1.8079 2.4447 -1.1512 6 1 1.9792 2.3457 1.2657 7 6 2.0102 -1.2021 -0.0005 8 1 1.5560 -2.0877 -0.4200 9 7 3.2684 -1.2667 0.5359 10 6 3.6204 -0.4237 1.6813 11 6 3.3678 -1.1946 2.9786 12 6 3.7305 -0.3278 4.1567 13 8 4.1477 0.7918 3.9773 14 8 3.5890 -0.7992 5.4055 15 6 4.2626 -2.1784 -0.0355 16 6 5.0336 -1.4670 -1.1173 17 6 4.5887 -1.5108 -2.4257 18 6 5.2923 -0.8547 -3.4180 19 6 6.4481 -0.1623 -3.1041 20 17 7.3362 0.6560 -4.3513 21 6 6.8965 -0.1228 -1.7949 22 17 8.3463 0.7461 -1.3992 23 6 6.1881 -0.7758 -0.8020 24 1 -0.4851 -0.8400 -0.0004 25 1 4.6737 -0.1497 1.6207 26 1 3.0091 0.4786 1.6698 27 1 2.3145 -1.4686 3.0391 28 1 3.9792 -2.0969 2.9899 29 1 3.8343 -0.2062 6.1290 30 1 4.9491 -2.5035 0.7462 31 1 3.7579 -3.0463 -0.4599 32 1 3.6890 -2.0552 -2.6719 33 1 4.9420 -0.8860 -4.4391 34 1 6.5371 -0.7450 0.2196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:14 Heat of formation + Delta-G solvation = -83.471221 kcal Electronic energy + Delta-G solvation = -21950.322233 eV Core-core repulsion = 18320.559961 eV Total energy + Delta-G solvation = -3629.762272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22402 -40.50310 -38.23056 -37.51412 -37.35601 -36.96639 -34.09975 -33.15424 -31.87496 -31.07923 -27.47420 -26.28114 -23.87619 -23.67940 -22.28190 -21.61614 -19.48773 -18.92631 -18.18518 -17.62593 -17.33207 -16.90683 -16.66754 -16.24190 -15.81366 -15.57545 -15.07625 -14.86460 -14.77500 -14.36501 -14.05184 -13.76032 -13.32068 -13.02901 -12.91874 -12.88913 -12.72566 -12.51659 -12.23310 -12.18457 -11.99047 -11.95098 -11.83672 -11.62818 -11.57990 -11.28973 -10.61821 -9.89857 -9.59636 -9.10354 -8.48025 -5.54927 0.01900 0.17865 0.83667 1.20918 1.24707 1.43889 1.49368 1.64250 2.14889 2.47511 2.52185 3.10181 3.54530 3.67657 3.90750 4.08407 4.11991 4.19446 4.28857 4.36840 4.54663 4.63427 4.68427 4.85738 4.91145 4.97287 5.00809 5.13209 5.20421 5.59647 5.64231 5.70984 5.92764 6.32350 6.87890 7.04830 7.55373 8.06601 8.85907 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.004981 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.468637 B = 5620.072466 C = 6610.121907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.037 4.037 3 Si 1.070 2.930 4 H -0.262 1.262 5 H -0.310 1.310 6 H -0.302 1.302 7 C -0.323 4.323 8 H 0.052 0.948 9 N -0.596 5.596 10 C 0.156 3.844 11 C -0.126 4.126 12 C 0.488 3.512 13 O -0.555 6.555 14 O -0.511 6.511 15 C 0.176 3.824 16 C -0.078 4.078 17 C -0.092 4.092 18 C -0.101 4.101 19 C -0.052 4.052 20 Cl -0.056 7.056 21 C -0.042 4.042 22 Cl -0.057 7.057 23 C -0.101 4.101 24 H 0.260 0.740 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.425 0.575 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.157 0.843 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 -5.109 0.369 15.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.236 4.236 3 Si 0.900 3.100 4 H -0.186 1.186 5 H -0.239 1.239 6 H -0.230 1.230 7 C -0.453 4.453 8 H 0.070 0.930 9 N -0.317 5.317 10 C 0.030 3.970 11 C -0.166 4.166 12 C 0.332 3.668 13 O -0.446 6.446 14 O -0.324 6.324 15 C 0.052 3.948 16 C -0.082 4.082 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.080 4.080 20 Cl -0.027 7.027 21 C -0.069 4.069 22 Cl -0.028 7.028 23 C -0.121 4.121 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.286 0.714 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.383 -3.322 -0.056 14.761 hybrid contribution -0.006 -0.618 0.242 0.664 sum 14.377 -3.940 0.186 14.908 Atomic orbital electron populations 1.70954 1.07663 1.29570 1.50305 1.26644 0.96204 1.03108 0.97679 0.83604 0.76434 0.74751 0.75206 1.18638 1.23931 1.23018 1.19901 0.91344 0.94461 1.39562 0.93046 1.44256 1.09292 1.48188 1.29975 1.20852 0.98691 0.92036 0.85396 1.22018 1.05248 1.00010 0.89310 1.23809 0.72410 0.85860 0.84752 1.90700 1.44623 1.22498 1.86829 1.84529 1.80169 1.50908 1.16825 1.20252 0.90232 0.91728 0.92636 1.21163 0.93097 0.97502 0.96426 1.21308 0.99106 0.98585 0.92096 1.21247 0.92721 0.96382 1.01656 1.20812 0.96729 1.01918 0.88492 1.98353 1.74823 1.77655 1.51907 1.20865 0.92085 1.00741 0.93259 1.98355 1.35305 1.75051 1.94106 1.21064 0.94887 0.97168 0.98955 0.93066 0.91803 0.95623 0.88315 0.85095 0.71406 0.89506 0.90921 0.84246 0.82550 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.15 13.71 21.65 0.30 -55.85 16 2 C -0.04 -2.02 5.23 84.86 0.44 -1.57 16 3 Si 1.07 53.53 25.43 68.60 1.74 55.27 16 4 H -0.26 -12.21 6.57 99.48 0.65 -11.55 16 5 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 6 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 7 C -0.32 -15.78 9.77 84.03 0.82 -14.96 16 8 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 9 N -0.60 -23.58 2.13 -706.35 -1.50 -25.08 16 10 C 0.16 5.99 3.44 86.38 0.30 6.28 16 11 C -0.13 -3.92 6.13 29.85 0.18 -3.73 16 12 C 0.49 14.81 8.33 71.24 0.59 15.40 16 13 O -0.56 -20.68 16.74 21.97 0.37 -20.32 16 14 O -0.51 -11.51 13.42 -51.38 -0.69 -12.20 16 15 C 0.18 5.41 5.80 85.63 0.50 5.91 16 16 C -0.08 -2.41 5.46 -19.87 -0.11 -2.52 16 17 C -0.09 -2.75 9.70 22.27 0.22 -2.53 16 18 C -0.10 -2.80 9.83 22.29 0.22 -2.58 16 19 C -0.05 -1.48 6.32 22.34 0.14 -1.34 16 20 Cl -0.06 -1.45 27.96 -2.72 -0.08 -1.53 16 21 C -0.04 -1.23 6.32 22.35 0.14 -1.09 16 22 Cl -0.06 -1.53 27.96 -2.72 -0.08 -1.61 16 23 C -0.10 -2.97 9.48 22.29 0.21 -2.76 16 24 H 0.26 15.23 8.73 -92.71 -0.81 14.42 16 25 H 0.06 2.27 8.05 -2.39 -0.02 2.25 16 26 H 0.03 1.17 3.44 -2.39 -0.01 1.16 16 27 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.42 5.62 9.10 -74.05 -0.67 4.94 16 30 H 0.09 2.12 8.01 -2.39 -0.02 2.10 16 31 H 0.07 2.17 7.98 -2.39 -0.02 2.15 16 32 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 34 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -64.88 327.81 4.11 -60.77 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.39 Total: 6.05 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 3.66 Total: -5.51 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.21 Total: -80.93 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.32 Total: -32.51 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 1.74 Total: 55.27 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.15 Total: -3.13 kcal Total: -64.88 4.11 -60.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.698 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds