Wall clock time and date at job start Tue Mar 31 2020 11:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47275 * 2 1 4 4 C 1.46902 * 111.00058 * 300.00228 * 3 2 1 5 5 C 1.50701 * 109.47512 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99831 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00336 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 120.00169 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47492 * 90.00093 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00088 * 9 7 5 12 12 H 1.48506 * 109.47412 * 329.99772 * 9 7 5 13 13 C 1.50696 * 109.47128 * 239.99875 * 2 1 3 14 14 O 1.20822 * 119.99887 * 335.00201 * 13 2 1 15 15 O 1.34225 * 120.00342 * 154.99943 * 13 2 1 16 16 C 1.50708 * 109.47143 * 119.99837 * 2 1 3 17 17 C 1.38264 * 119.97765 * 60.00398 * 16 2 1 18 18 C 1.38210 * 120.03420 * 179.97438 * 17 16 2 19 19 C 1.38347 * 119.99935 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.01556 * 180.02562 * 19 18 17 21 21 C 1.38448 * 119.96430 * 359.97438 * 19 18 17 22 22 Cl 1.73599 * 120.01784 * 180.02562 * 21 19 18 23 23 C 1.38208 * 119.97980 * 240.22816 * 16 2 1 24 24 H 1.09005 * 109.47126 * 299.99944 * 1 2 3 25 25 H 1.08993 * 109.47428 * 59.99513 * 1 2 3 26 26 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.00904 * 111.00538 * 176.05037 * 3 2 1 28 28 H 1.09001 * 109.47140 * 299.99802 * 4 3 2 29 29 H 1.09001 * 109.46758 * 59.99884 * 4 3 2 30 30 H 0.96994 * 119.99787 * 179.97438 * 8 7 5 31 31 H 0.96702 * 117.00635 * 179.97438 * 15 13 2 32 32 H 1.07993 * 119.98183 * 359.97362 * 17 16 2 33 33 H 1.08000 * 119.99905 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.99955 * 0.03168 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5486 2.1099 -1.1877 5 6 2.0692 3.5237 -1.1526 6 1 2.6878 3.8511 -0.3301 7 6 1.7559 4.3992 -2.1706 8 7 1.0030 4.0003 -3.1725 9 14 2.4017 6.1514 -2.1274 10 1 3.7162 6.2115 -2.8156 11 1 1.4409 7.0502 -2.8161 12 1 2.5614 6.5855 -0.7163 13 6 2.0323 -0.7104 -1.2304 14 8 1.3395 -1.5362 -1.7763 15 8 3.2492 -0.4258 -1.7200 16 6 2.0323 -0.7104 1.2305 17 6 1.6981 -2.0342 1.4489 18 6 2.1586 -2.6869 2.5767 19 6 2.9549 -2.0160 3.4876 20 17 3.5341 -2.8357 4.9041 21 6 3.2904 -0.6908 3.2684 22 17 4.2900 0.1523 4.4102 23 6 2.8230 -0.0369 2.1424 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.0262 1.4127 0.0649 28 1 1.9121 1.6107 -2.0859 29 1 0.4587 2.1245 -1.1958 30 1 0.7823 4.6163 -3.8884 31 1 3.5281 -0.9075 -2.5108 32 1 1.0769 -2.5583 0.7378 33 1 1.8968 -3.7208 2.7469 34 1 3.0802 0.9983 1.9732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609775081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:40 Heat of formation + Delta-G solvation = -77.235700 kcal Electronic energy + Delta-G solvation = -22049.750358 eV Core-core repulsion = 18420.258478 eV Total energy + Delta-G solvation = -3629.491880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79050 -39.28271 -37.01233 -36.61729 -35.93112 -35.86513 -33.02332 -31.24786 -30.96740 -28.89495 -26.65104 -24.69435 -23.19937 -22.76409 -21.69325 -19.64712 -17.86544 -17.73136 -16.90826 -16.51837 -15.92604 -15.49060 -15.20111 -14.79509 -14.38336 -14.21537 -14.00474 -13.51698 -13.12406 -12.82281 -12.37033 -12.13252 -12.01873 -11.96812 -11.78941 -11.62994 -11.47326 -11.25590 -11.12279 -11.06847 -10.90705 -10.89629 -10.72968 -10.32938 -10.01353 -9.32103 -9.06420 -8.77384 -8.58969 -7.76643 -6.12592 -4.15144 0.75113 0.98364 1.71211 2.07118 2.44087 3.11298 3.27486 3.34156 3.37879 3.44019 4.27941 4.44077 4.51642 4.81298 4.97445 5.08862 5.14948 5.23281 5.26362 5.48448 5.65772 5.75217 5.88239 5.98644 6.08947 6.30155 6.42465 6.46737 6.73720 6.95226 7.19354 7.56719 7.92506 8.03721 8.11915 8.34246 8.91609 9.49804 10.98439 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.004038 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.190597 B = 6931.801073 C = 8176.345699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.169 3.831 3 N -0.662 5.662 4 C 0.188 3.812 5 C -0.515 4.515 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.900 3.100 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.463 3.537 14 O -0.522 6.522 15 O -0.506 6.506 16 C -0.055 4.055 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.031 4.031 20 Cl -0.057 7.057 21 C -0.032 4.032 22 Cl -0.050 7.050 23 C -0.066 4.066 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.344 0.656 28 H -0.004 1.004 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -13.395 11.646 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 N -0.295 5.295 4 C 0.062 3.938 5 C -0.554 4.554 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.728 3.272 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.303 3.697 14 O -0.409 6.409 15 O -0.317 6.317 16 C -0.056 4.056 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.059 4.059 20 Cl -0.028 7.028 21 C -0.060 4.060 22 Cl -0.020 7.020 23 C -0.085 4.085 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.014 0.986 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.263 0.737 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.018 -13.084 12.303 18.212 hybrid contribution 1.153 0.243 -1.222 1.698 sum 4.171 -12.841 11.081 17.466 Atomic orbital electron populations 1.21831 0.89507 1.02562 1.04612 1.19859 0.97422 0.89733 0.85519 1.61011 1.16542 1.06269 1.45644 1.19781 0.96799 0.93053 0.84137 1.21054 1.31989 0.95248 1.07093 0.91695 1.24962 0.95127 0.99048 0.95226 1.69954 1.36998 1.35922 1.10587 0.86458 0.78529 0.83920 0.78286 1.20683 1.21236 1.19662 1.24923 0.78673 0.79689 0.86421 1.90642 1.56853 1.33198 1.60207 1.84593 1.34795 1.65560 1.46750 1.19589 0.97034 0.93523 0.95492 1.21187 0.99144 0.93986 0.97171 1.20930 0.97294 1.00576 0.93181 1.20805 1.01405 0.91899 0.91778 1.98378 1.87547 1.78398 1.38429 1.20755 0.99412 0.91483 0.94317 1.98389 1.67322 1.77244 1.59091 1.21109 0.94936 1.01739 0.90740 0.90118 0.90389 0.91562 0.83686 0.98650 0.94464 0.92772 0.73746 0.84100 0.83971 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 7.58 37.16 0.28 -1.76 16 2 C 0.17 2.78 0.76 -133.91 -0.10 2.68 16 3 N -0.66 -12.61 4.96 -103.58 -0.51 -13.12 16 4 C 0.19 4.52 4.71 -4.97 -0.02 4.49 16 5 C -0.52 -13.69 9.32 -34.44 -0.32 -14.01 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 C 0.46 7.99 5.53 36.00 0.20 8.19 16 14 O -0.52 -9.69 16.85 -18.75 -0.32 -10.01 16 15 O -0.51 -8.00 12.23 -39.25 -0.48 -8.48 16 16 C -0.06 -0.77 4.76 -104.62 -0.50 -1.27 16 17 C -0.10 -1.16 8.81 -39.58 -0.35 -1.51 16 18 C -0.10 -1.08 9.83 -39.55 -0.39 -1.47 16 19 C -0.03 -0.37 6.32 -39.46 -0.25 -0.62 16 20 Cl -0.06 -0.60 27.96 -51.86 -1.45 -2.05 16 21 C -0.03 -0.41 6.32 -39.46 -0.25 -0.66 16 22 Cl -0.05 -0.60 27.96 -51.86 -1.45 -2.05 16 23 C -0.07 -0.91 8.92 -39.55 -0.35 -1.26 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.42 6.40 -51.93 -0.33 1.09 16 26 H 0.07 0.93 7.12 -51.93 -0.37 0.56 16 27 H 0.34 6.35 7.21 -39.29 -0.28 6.06 16 28 H 0.00 -0.11 6.64 -51.93 -0.34 -0.45 16 29 H 0.04 0.96 6.30 -51.93 -0.33 0.64 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.40 4.61 9.10 45.56 0.41 5.02 16 32 H 0.14 1.60 7.57 -52.49 -0.40 1.20 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.16 2.29 6.41 -52.49 -0.34 1.96 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -29.87 321.53 -8.17 -38.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -2.37 Total: 7.61 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.15 Total: -5.68 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.22 Total: -38.11 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.80 Total: -18.49 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -2.90 Total: -4.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.87 -8.17 -38.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609775081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.203 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds