Wall clock time and date at job start Tue Mar 31 2020 11:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47275 * 2 1 4 4 C 1.46902 * 111.00058 * 300.00228 * 3 2 1 5 5 C 1.50701 * 109.47512 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99831 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00336 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86789 * 120.00169 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47492 * 90.00093 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00088 * 9 7 5 12 12 H 1.48506 * 109.47412 * 329.99772 * 9 7 5 13 13 C 1.50696 * 109.47128 * 239.99875 * 2 1 3 14 14 O 1.20822 * 119.99887 * 335.00201 * 13 2 1 15 15 O 1.34225 * 120.00342 * 154.99943 * 13 2 1 16 16 C 1.50708 * 109.47143 * 119.99837 * 2 1 3 17 17 C 1.38264 * 119.97765 * 60.00398 * 16 2 1 18 18 C 1.38210 * 120.03420 * 179.97438 * 17 16 2 19 19 C 1.38347 * 119.99935 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.01556 * 180.02562 * 19 18 17 21 21 C 1.38448 * 119.96430 * 359.97438 * 19 18 17 22 22 Cl 1.73599 * 120.01784 * 180.02562 * 21 19 18 23 23 C 1.38208 * 119.97980 * 240.22816 * 16 2 1 24 24 H 1.09005 * 109.47126 * 299.99944 * 1 2 3 25 25 H 1.08993 * 109.47428 * 59.99513 * 1 2 3 26 26 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.00904 * 111.00538 * 176.05037 * 3 2 1 28 28 H 1.09001 * 109.47140 * 299.99802 * 4 3 2 29 29 H 1.09001 * 109.46758 * 59.99884 * 4 3 2 30 30 H 0.96994 * 119.99787 * 179.97438 * 8 7 5 31 31 H 0.96702 * 117.00635 * 179.97438 * 15 13 2 32 32 H 1.07993 * 119.98183 * 359.97362 * 17 16 2 33 33 H 1.08000 * 119.99905 * 179.97438 * 18 17 16 34 34 H 1.08000 * 119.99955 * 0.03168 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5486 2.1099 -1.1877 5 6 2.0692 3.5237 -1.1526 6 1 2.6878 3.8511 -0.3301 7 6 1.7559 4.3992 -2.1706 8 7 1.0030 4.0003 -3.1725 9 14 2.4017 6.1514 -2.1274 10 1 3.7162 6.2115 -2.8156 11 1 1.4409 7.0502 -2.8161 12 1 2.5614 6.5855 -0.7163 13 6 2.0323 -0.7104 -1.2304 14 8 1.3395 -1.5362 -1.7763 15 8 3.2492 -0.4258 -1.7200 16 6 2.0323 -0.7104 1.2305 17 6 1.6981 -2.0342 1.4489 18 6 2.1586 -2.6869 2.5767 19 6 2.9549 -2.0160 3.4876 20 17 3.5341 -2.8357 4.9041 21 6 3.2904 -0.6908 3.2684 22 17 4.2900 0.1523 4.4102 23 6 2.8230 -0.0369 2.1424 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.0262 1.4127 0.0649 28 1 1.9121 1.6107 -2.0859 29 1 0.4587 2.1245 -1.1958 30 1 0.7823 4.6163 -3.8884 31 1 3.5281 -0.9075 -2.5108 32 1 1.0769 -2.5583 0.7378 33 1 1.8968 -3.7208 2.7469 34 1 3.0802 0.9983 1.9732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609775081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:39 Heat of formation + Delta-G solvation = -95.643820 kcal Electronic energy + Delta-G solvation = -22050.548594 eV Core-core repulsion = 18420.258478 eV Total energy + Delta-G solvation = -3630.290116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.07135 -40.38143 -38.14377 -37.55269 -37.26169 -37.14149 -34.92080 -32.61261 -32.06004 -30.14941 -28.40916 -26.16374 -24.53436 -23.82711 -23.21819 -20.95544 -19.19428 -19.12232 -18.34984 -17.94314 -17.11091 -16.88825 -16.47970 -16.38614 -15.77864 -15.34506 -15.01617 -14.80979 -14.52224 -14.27426 -14.12757 -13.44149 -13.31737 -13.16877 -12.92791 -12.90657 -12.73594 -12.66291 -12.61494 -12.48760 -12.28986 -12.05870 -11.92244 -11.89000 -11.69144 -11.29816 -10.63965 -10.02463 -9.76393 -9.42245 -8.20928 -6.30439 -0.23926 0.02675 0.78279 1.02957 1.17354 1.44405 1.45220 1.56549 1.93622 2.37647 2.41624 3.10242 3.14338 3.48996 3.60299 3.82136 4.00850 4.09605 4.20072 4.32911 4.64092 4.67702 4.71277 4.85150 4.93682 5.08015 5.12243 5.21841 5.30598 5.44323 5.49790 5.60370 5.96372 6.26701 6.49258 6.86134 6.87486 7.39491 8.90529 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.004038 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.190597 B = 6931.801073 C = 8176.345699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.169 3.831 3 N -0.654 5.654 4 C 0.205 3.795 5 C -0.530 4.530 6 H 0.069 0.931 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.462 3.538 14 O -0.538 6.538 15 O -0.510 6.510 16 C -0.065 4.065 17 C -0.092 4.092 18 C -0.088 4.088 19 C -0.032 4.032 20 Cl -0.044 7.044 21 C -0.038 4.038 22 Cl -0.048 7.048 23 C -0.074 4.074 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.348 0.652 28 H -0.030 1.030 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.422 0.578 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.470 -14.184 13.029 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.075 3.925 3 N -0.286 5.286 4 C 0.078 3.922 5 C -0.568 4.568 6 H 0.087 0.913 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.793 3.207 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.303 3.697 14 O -0.427 6.427 15 O -0.323 6.323 16 C -0.066 4.066 17 C -0.111 4.111 18 C -0.106 4.106 19 C -0.060 4.060 20 Cl -0.015 7.015 21 C -0.065 4.065 22 Cl -0.019 7.019 23 C -0.093 4.093 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.168 0.832 28 H -0.012 1.012 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.283 0.717 32 H 0.168 0.832 33 H 0.191 0.809 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.733 -13.889 13.701 19.863 hybrid contribution 0.975 0.390 -1.606 1.919 sum 4.708 -13.498 12.095 18.726 Atomic orbital electron populations 1.21817 0.89400 1.03596 1.03442 1.19889 0.97594 0.88299 0.86750 1.60838 1.16756 1.08082 1.42973 1.19365 0.95186 0.92668 0.84967 1.21463 1.31751 0.96508 1.07086 0.91310 1.25839 0.95305 1.03289 0.94858 1.70082 1.38412 1.37401 1.11389 0.85402 0.77931 0.78782 0.78622 1.19982 1.21133 1.18716 1.24997 0.78826 0.79442 0.86433 1.90627 1.57304 1.34097 1.60674 1.84549 1.34175 1.65835 1.47769 1.19363 0.98303 0.94363 0.94573 1.21274 0.98968 0.93065 0.97762 1.21214 0.95817 1.01691 0.91876 1.20952 1.01129 0.91613 0.92293 1.98387 1.87390 1.77996 1.37751 1.20774 0.99601 0.92002 0.94144 1.98388 1.67248 1.77350 1.58878 1.20974 0.95535 1.01421 0.91350 0.89362 0.93374 0.89426 0.83245 1.01189 0.96742 0.92747 0.71665 0.83227 0.80924 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 7.58 71.98 0.55 -3.47 16 2 C 0.17 5.53 0.76 2.04 0.00 5.53 16 3 N -0.65 -25.23 4.96 -481.62 -2.39 -27.62 16 4 C 0.21 10.14 4.71 85.56 0.40 10.54 16 5 C -0.53 -28.45 9.32 25.60 0.24 -28.21 16 6 H 0.07 3.56 7.81 -2.91 -0.02 3.53 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -54.58 13.29 21.45 0.28 -54.29 16 9 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.46 15.91 5.53 71.23 0.39 16.30 16 14 O -0.54 -19.84 16.85 21.98 0.37 -19.47 16 15 O -0.51 -16.03 12.23 -51.37 -0.63 -16.66 16 16 C -0.06 -1.74 4.76 -19.86 -0.09 -1.83 16 17 C -0.09 -2.00 8.81 22.27 0.20 -1.81 16 18 C -0.09 -1.60 9.83 22.29 0.22 -1.38 16 19 C -0.03 -0.68 6.32 22.35 0.14 -0.53 16 20 Cl -0.04 -0.84 27.96 -2.72 -0.08 -0.91 16 21 C -0.04 -0.90 6.32 22.35 0.14 -0.76 16 22 Cl -0.05 -1.10 27.96 -2.72 -0.08 -1.18 16 23 C -0.07 -1.95 8.92 22.29 0.20 -1.75 16 24 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 25 H 0.05 1.82 6.40 -2.39 -0.02 1.80 16 26 H 0.09 2.38 7.12 -2.39 -0.02 2.36 16 27 H 0.35 12.95 7.21 -89.69 -0.65 12.30 16 28 H -0.03 -1.59 6.64 -2.39 -0.02 -1.61 16 29 H 0.01 0.78 6.30 -2.39 -0.02 0.77 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.42 9.43 9.10 -74.06 -0.67 8.76 16 32 H 0.15 3.02 7.57 -2.91 -0.02 3.00 16 33 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.15 4.26 6.41 -2.91 -0.02 4.24 16 Total: -1.00 -63.69 321.53 2.22 -61.47 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.14 Total: 20.30 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 2.85 Total: -6.60 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.11 Total: -81.91 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.26 Total: -36.13 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.15 Total: -2.09 kcal Total: -63.69 2.22 -61.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609775081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.169 kcal (2) G-P(sol) polarization free energy of solvation -63.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds