Wall clock time and date at job start Tue Mar 31 2020 12:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38484 * 120.01050 * 2 1 4 4 F 1.35100 * 120.02886 * 359.95471 * 3 2 1 5 5 C 1.38439 * 119.94750 * 179.97438 * 3 2 1 6 6 C 1.38220 * 119.97339 * 359.97438 * 5 3 2 7 7 C 1.38222 * 120.02601 * 0.02562 * 6 5 3 8 8 C 1.38176 * 120.01337 * 179.97438 * 2 1 3 9 9 S 1.76191 * 119.98659 * 0.02719 * 8 2 1 10 10 O 1.42101 * 106.40475 * 44.62878 * 9 8 2 11 11 O 1.42107 * 106.40373 * 177.55137 * 9 8 2 12 12 N 1.65606 * 107.21689 * 291.08618 * 9 8 2 13 13 C 1.36935 * 119.99731 * 98.58573 * 12 9 8 14 14 H 1.08002 * 120.00396 * 14.02857 * 13 12 9 15 15 C 1.38814 * 119.99730 * 194.03626 * 13 12 9 16 16 N 1.31619 * 120.00251 * 4.88746 * 15 13 12 17 17 Si 1.86799 * 119.99889 * 184.88549 * 15 13 12 18 18 H 1.48506 * 109.47464 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47152 * 120.00111 * 17 15 13 20 20 H 1.48507 * 109.47345 * 239.99969 * 17 15 13 21 21 C 1.46495 * 120.00195 * 278.58007 * 12 9 8 22 22 C 1.50702 * 109.46794 * 93.21459 * 21 12 9 23 23 O 1.20817 * 120.00174 * 0.02562 * 22 21 12 24 24 O 1.34236 * 119.99438 * 180.02562 * 22 21 12 25 25 H 1.09000 * 109.46849 * 84.63986 * 1 2 3 26 26 H 1.09000 * 109.47410 * 204.64014 * 1 2 3 27 27 H 1.09004 * 109.47332 * 324.64075 * 1 2 3 28 28 H 1.08002 * 120.01424 * 180.02562 * 5 3 2 29 29 H 1.08004 * 119.98789 * 180.02562 * 6 5 3 30 30 H 1.08000 * 119.97444 * 179.70459 * 7 6 5 31 31 H 0.96991 * 120.00306 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47393 * 213.21137 * 21 12 9 33 33 H 1.08999 * 109.47193 * 333.21803 * 21 12 9 34 34 H 0.96701 * 116.99159 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1992 0.0000 4 9 1.5249 2.3696 -0.0009 5 6 3.5840 1.1977 0.0005 6 6 4.2732 -0.0004 0.0016 7 6 3.5808 -1.1967 0.0016 8 6 2.1982 -1.1965 0.0005 9 16 1.3172 -2.7223 0.0005 10 8 0.2768 -2.5850 -0.9576 11 8 2.2961 -3.7509 -0.0571 12 7 0.5786 -2.8620 1.4762 13 6 -0.7422 -2.5286 1.6149 14 1 -1.3603 -2.3945 0.7394 15 6 -1.2869 -2.3630 2.8810 16 7 -0.5139 -2.4312 3.9441 17 14 -3.1170 -2.0431 3.0758 18 1 -3.7595 -2.0122 1.7373 19 1 -3.7244 -3.1248 3.8922 20 1 -3.3220 -0.7374 3.7529 21 6 1.3383 -3.3422 2.6330 22 6 1.9034 -2.1657 3.3864 23 8 1.6926 -1.0415 2.9972 24 8 2.6408 -2.3669 4.4899 25 1 -0.3633 0.0960 -1.0232 26 1 -0.3634 -0.9341 0.4284 27 1 -0.3634 0.8381 0.5947 28 1 4.1253 2.1322 0.0010 29 1 5.3533 -0.0019 0.0024 30 1 4.1202 -2.1324 -0.0024 31 1 -0.8944 -2.3151 4.8286 32 1 0.6800 -3.9116 3.2891 33 1 2.1533 -3.9811 2.2927 34 1 2.9813 -1.5813 4.9394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610417640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:50 Heat of formation + Delta-G solvation = -158.134769 kcal Electronic energy + Delta-G solvation = -26444.671638 eV Core-core repulsion = 22385.379042 eV Total energy + Delta-G solvation = -4059.292596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.47917 -39.06977 -38.50286 -36.29427 -36.03384 -34.73067 -34.60245 -32.36638 -31.70099 -30.22196 -27.95654 -26.36575 -24.33802 -22.80085 -21.29464 -20.84720 -18.85747 -17.86251 -17.26271 -16.85952 -16.81509 -16.05763 -15.58877 -15.37044 -15.24845 -14.97729 -14.63414 -14.44835 -14.40751 -13.54066 -13.13360 -12.82752 -12.74835 -12.27933 -12.13725 -12.02393 -11.70617 -11.56893 -11.46793 -11.20580 -11.13063 -11.08598 -10.87746 -10.65461 -10.53779 -10.46581 -10.25434 -10.06220 -9.64177 -9.19185 -8.76624 -8.44092 -8.14762 -6.76226 -4.22828 1.21983 1.55459 1.63229 3.02381 3.09191 3.14914 3.57216 3.67388 3.88229 4.02998 4.39731 4.60396 4.68881 4.85787 5.07542 5.13926 5.44451 5.52279 5.74495 5.96562 5.99443 6.10675 6.28768 6.34474 6.37200 6.49177 6.52647 6.59879 6.73486 6.95406 6.98500 7.15595 7.33105 7.58030 8.00536 8.40616 8.81948 9.13075 10.21231 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.007544 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.148858 B = 3710.576544 C = 3945.907341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.015 3.985 3 C 0.065 3.935 4 F -0.144 7.144 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.046 4.046 8 C -0.633 4.633 9 S 2.555 3.445 10 O -0.975 6.975 11 O -0.991 6.991 12 N -0.793 5.793 13 C -0.245 4.245 14 H 0.131 0.869 15 C 0.036 3.964 16 N -0.850 5.850 17 Si 0.935 3.065 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.277 1.277 21 C 0.158 3.842 22 C 0.489 3.511 23 O -0.513 6.513 24 O -0.534 6.534 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.280 0.720 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 1.903 0.030 4.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.013 3.987 3 C 0.045 3.955 4 F -0.123 7.123 5 C -0.137 4.137 6 C -0.150 4.150 7 C -0.065 4.065 8 C -0.711 4.711 9 S 2.652 3.348 10 O -0.965 6.965 11 O -0.981 6.981 12 N -0.617 5.617 13 C -0.389 4.389 14 H 0.148 0.852 15 C -0.173 4.173 16 N -0.493 5.493 17 Si 0.760 3.240 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.202 1.202 21 C 0.029 3.971 22 C 0.329 3.671 23 O -0.399 6.399 24 O -0.344 6.344 25 H 0.096 0.904 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.105 0.895 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.348 1.363 -0.994 4.663 hybrid contribution -0.149 2.155 0.992 2.377 sum 4.199 3.519 -0.002 5.478 Atomic orbital electron populations 1.21572 0.89451 1.07079 1.02895 1.19450 0.96938 0.90317 0.92034 1.17636 0.90158 0.81105 1.06607 1.91432 1.80584 1.45969 1.94308 1.21123 0.92317 0.99391 1.00874 1.20946 0.99636 0.91881 1.02528 1.20927 0.92729 0.98674 0.94211 1.32081 1.05909 1.22418 1.10705 1.10165 0.72619 0.75124 0.76911 1.93404 1.54841 1.86893 1.61314 1.93376 1.61631 1.55637 1.87471 1.54449 1.14515 1.68406 1.24354 1.20068 0.81767 1.41869 0.95192 0.85162 1.25538 1.01545 0.95315 0.94937 1.69603 1.36067 1.44250 0.99379 0.85691 0.80365 0.78441 0.79480 1.18347 1.20014 1.20243 1.20852 0.96206 0.91682 0.88378 1.23997 0.72748 0.92348 0.77958 1.90605 1.55875 1.25680 1.67754 1.84542 1.65523 1.42472 1.41858 0.90399 0.86595 0.91295 0.85358 0.85435 0.84605 0.90842 0.83598 0.89511 0.75615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.60 36.01 0.31 -2.94 16 2 C 0.01 0.31 5.69 -104.55 -0.60 -0.28 16 3 C 0.06 1.27 7.24 -39.42 -0.29 0.99 16 4 F -0.14 -2.76 16.58 2.25 0.04 -2.73 16 5 C -0.12 -1.99 10.03 -39.51 -0.40 -2.39 16 6 C -0.13 -2.14 10.04 -39.59 -0.40 -2.53 16 7 C -0.05 -0.87 9.55 -39.58 -0.38 -1.25 16 8 C -0.63 -13.49 5.04 -39.59 -0.20 -13.69 16 9 S 2.55 57.64 5.07 -107.50 -0.54 57.09 16 10 O -0.98 -23.52 14.81 -57.17 -0.85 -24.37 16 11 O -0.99 -22.87 15.74 -57.17 -0.90 -23.77 16 12 N -0.79 -17.81 2.37 -61.09 -0.14 -17.96 16 13 C -0.25 -5.61 7.17 -15.06 -0.11 -5.72 16 14 H 0.13 2.95 6.27 -52.49 -0.33 2.62 16 15 C 0.04 0.79 5.30 -17.43 -0.09 0.70 16 16 N -0.85 -19.05 8.00 55.49 0.44 -18.60 16 17 Si 0.94 17.84 29.56 -169.99 -5.02 12.82 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 21 C 0.16 3.29 5.54 -5.20 -0.03 3.26 16 22 C 0.49 10.32 6.15 36.01 0.22 10.55 16 23 O -0.51 -12.09 15.76 -18.74 -0.30 -12.39 16 24 O -0.53 -9.48 13.42 -39.27 -0.53 -10.01 16 25 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.12 2.60 2.15 -51.93 -0.11 2.49 16 27 H 0.07 1.39 7.80 -51.93 -0.41 0.98 16 28 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.14 2.36 7.33 -52.49 -0.38 1.98 16 31 H 0.28 6.02 8.31 -40.82 -0.34 5.68 16 32 H 0.15 3.05 6.26 -51.93 -0.33 2.73 16 33 H 0.09 1.66 7.07 -51.93 -0.37 1.29 16 34 H 0.39 5.38 9.10 45.56 0.41 5.79 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -28.68 301.54 -7.12 -35.80 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -1.91 Total: 12.87 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.95 Total: -13.30 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.30 Total: -36.56 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: -2.57 Total: -70.54 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.02 Total: 12.82 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -0.54 Total: 57.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.68 -7.12 -35.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610417640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.339 kcal (2) G-P(sol) polarization free energy of solvation -28.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds