Wall clock time and date at job start Tue Mar 31 2020 12:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38484 * 120.01050 * 2 1 4 4 F 1.35100 * 120.02886 * 359.95471 * 3 2 1 5 5 C 1.38439 * 119.94750 * 179.97438 * 3 2 1 6 6 C 1.38220 * 119.97339 * 359.97438 * 5 3 2 7 7 C 1.38222 * 120.02601 * 0.02562 * 6 5 3 8 8 C 1.38176 * 120.01337 * 179.97438 * 2 1 3 9 9 S 1.76191 * 119.98659 * 0.02719 * 8 2 1 10 10 O 1.42101 * 106.40475 * 44.62878 * 9 8 2 11 11 O 1.42107 * 106.40373 * 177.55137 * 9 8 2 12 12 N 1.65606 * 107.21689 * 291.08618 * 9 8 2 13 13 C 1.36935 * 119.99731 * 98.58573 * 12 9 8 14 14 H 1.08002 * 120.00396 * 14.02857 * 13 12 9 15 15 C 1.38814 * 119.99730 * 194.03626 * 13 12 9 16 16 N 1.31619 * 120.00251 * 4.88746 * 15 13 12 17 17 Si 1.86799 * 119.99889 * 184.88549 * 15 13 12 18 18 H 1.48506 * 109.47464 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47152 * 120.00111 * 17 15 13 20 20 H 1.48507 * 109.47345 * 239.99969 * 17 15 13 21 21 C 1.46495 * 120.00195 * 278.58007 * 12 9 8 22 22 C 1.50702 * 109.46794 * 93.21459 * 21 12 9 23 23 O 1.20817 * 120.00174 * 0.02562 * 22 21 12 24 24 O 1.34236 * 119.99438 * 180.02562 * 22 21 12 25 25 H 1.09000 * 109.46849 * 84.63986 * 1 2 3 26 26 H 1.09000 * 109.47410 * 204.64014 * 1 2 3 27 27 H 1.09004 * 109.47332 * 324.64075 * 1 2 3 28 28 H 1.08002 * 120.01424 * 180.02562 * 5 3 2 29 29 H 1.08004 * 119.98789 * 180.02562 * 6 5 3 30 30 H 1.08000 * 119.97444 * 179.70459 * 7 6 5 31 31 H 0.96991 * 120.00306 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47393 * 213.21137 * 21 12 9 33 33 H 1.08999 * 109.47193 * 333.21803 * 21 12 9 34 34 H 0.96701 * 116.99159 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1992 0.0000 4 9 1.5249 2.3696 -0.0009 5 6 3.5840 1.1977 0.0005 6 6 4.2732 -0.0004 0.0016 7 6 3.5808 -1.1967 0.0016 8 6 2.1982 -1.1965 0.0005 9 16 1.3172 -2.7223 0.0005 10 8 0.2768 -2.5850 -0.9576 11 8 2.2961 -3.7509 -0.0571 12 7 0.5786 -2.8620 1.4762 13 6 -0.7422 -2.5286 1.6149 14 1 -1.3603 -2.3945 0.7394 15 6 -1.2869 -2.3630 2.8810 16 7 -0.5139 -2.4312 3.9441 17 14 -3.1170 -2.0431 3.0758 18 1 -3.7595 -2.0122 1.7373 19 1 -3.7244 -3.1248 3.8922 20 1 -3.3220 -0.7374 3.7529 21 6 1.3383 -3.3422 2.6330 22 6 1.9034 -2.1657 3.3864 23 8 1.6926 -1.0415 2.9972 24 8 2.6408 -2.3669 4.4899 25 1 -0.3633 0.0960 -1.0232 26 1 -0.3634 -0.9341 0.4284 27 1 -0.3634 0.8381 0.5947 28 1 4.1253 2.1322 0.0010 29 1 5.3533 -0.0019 0.0024 30 1 4.1202 -2.1324 -0.0024 31 1 -0.8944 -2.3151 4.8286 32 1 0.6800 -3.9116 3.2891 33 1 2.1533 -3.9811 2.2927 34 1 2.9813 -1.5813 4.9394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610417640.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:49 Heat of formation + Delta-G solvation = -177.161779 kcal Electronic energy + Delta-G solvation = -26445.496711 eV Core-core repulsion = 22385.379042 eV Total energy + Delta-G solvation = -4060.117669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.94929 -40.68406 -39.94889 -38.06263 -37.69560 -36.52384 -36.25712 -33.86121 -33.38288 -31.67656 -29.60743 -27.89747 -26.03624 -24.28032 -22.77174 -22.45000 -20.54608 -19.43316 -18.95568 -18.50615 -18.43809 -17.59884 -17.17590 -16.77876 -16.73580 -16.55365 -16.28006 -16.13413 -16.02693 -15.19364 -14.52253 -14.38104 -14.26417 -13.89166 -13.77522 -13.62081 -13.24876 -13.14711 -13.02425 -12.88982 -12.81413 -12.69819 -12.52402 -12.34982 -12.22034 -12.02539 -11.88943 -11.72743 -11.26316 -10.85478 -10.25170 -10.08727 -9.61397 -8.42853 -5.95752 -0.33051 -0.06632 0.18025 1.49501 1.52071 1.63816 1.94288 2.08976 2.38973 2.46119 2.80199 2.93467 3.15951 3.24059 3.63433 3.80857 3.90280 3.99331 4.30130 4.39782 4.53646 4.62088 4.67688 4.72078 4.92889 4.97375 5.08105 5.19786 5.20365 5.28112 5.36035 5.50660 5.89564 6.10716 6.30863 6.70673 7.12346 7.58936 8.54233 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.007544 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.148858 B = 3710.576544 C = 3945.907341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.011 4.011 3 C 0.045 3.955 4 F -0.146 7.146 5 C -0.106 4.106 6 C -0.117 4.117 7 C -0.057 4.057 8 C -0.653 4.653 9 S 2.568 3.432 10 O -0.999 6.999 11 O -1.002 7.002 12 N -0.802 5.802 13 C -0.266 4.266 14 H 0.123 0.877 15 C 0.008 3.992 16 N -0.864 5.864 17 Si 0.985 3.015 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.284 1.284 21 C 0.153 3.847 22 C 0.493 3.507 23 O -0.540 6.540 24 O -0.525 6.525 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.147 0.853 31 H 0.281 0.719 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 2.716 0.373 6.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 C 0.026 3.974 4 F -0.125 7.125 5 C -0.125 4.125 6 C -0.135 4.135 7 C -0.077 4.077 8 C -0.735 4.735 9 S 2.668 3.332 10 O -0.988 6.988 11 O -0.992 6.992 12 N -0.627 5.627 13 C -0.408 4.408 14 H 0.140 0.860 15 C -0.199 4.199 16 N -0.507 5.507 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.210 1.210 21 C 0.024 3.976 22 C 0.335 3.665 23 O -0.429 6.429 24 O -0.336 6.336 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.186 0.814 29 H 0.193 0.807 30 H 0.165 0.835 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.119 0.881 34 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 6.041 2.135 -0.617 6.437 hybrid contribution -0.514 1.950 0.870 2.196 sum 5.528 4.085 0.252 6.878 Atomic orbital electron populations 1.21541 0.90331 1.06327 1.03060 1.19525 0.96824 0.91326 0.93633 1.17898 0.91494 0.80540 1.07489 1.91422 1.80886 1.45767 1.94412 1.21621 0.91109 1.01447 0.98305 1.21461 1.01904 0.90381 0.99780 1.21249 0.91876 1.00553 0.93975 1.31736 1.07189 1.21336 1.13221 1.09226 0.72294 0.75250 0.76460 1.93368 1.55940 1.87414 1.62126 1.93351 1.61765 1.56431 1.87645 1.54262 1.14665 1.69237 1.24505 1.20077 0.82194 1.43180 0.95351 0.86006 1.26092 1.04326 0.94954 0.94553 1.69650 1.36903 1.44685 0.99443 0.84952 0.76978 0.77935 0.79281 1.18259 1.19081 1.21013 1.20927 0.96477 0.91965 0.88188 1.23912 0.72517 0.91779 0.78331 1.90595 1.57040 1.26577 1.68654 1.84476 1.64783 1.43572 1.40804 0.89974 0.87887 0.91337 0.81419 0.80656 0.83516 0.90790 0.83855 0.88097 0.73398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.74 8.60 71.24 0.61 -6.13 16 2 C -0.01 -0.47 5.69 -19.82 -0.11 -0.58 16 3 C 0.05 1.72 7.24 22.38 0.16 1.88 16 4 F -0.15 -5.43 16.58 44.97 0.75 -4.68 16 5 C -0.11 -3.18 10.03 22.31 0.22 -2.95 16 6 C -0.12 -3.32 10.04 22.26 0.22 -3.10 16 7 C -0.06 -2.03 9.55 22.27 0.21 -1.82 16 8 C -0.65 -27.47 5.04 22.26 0.11 -27.35 16 9 S 2.57 116.89 5.07 -56.49 -0.29 116.61 16 10 O -1.00 -49.38 14.81 -128.00 -1.90 -51.28 16 11 O -1.00 -46.06 15.74 -128.00 -2.01 -48.07 16 12 N -0.80 -36.48 2.37 -347.19 -0.82 -37.30 16 13 C -0.27 -12.40 7.17 84.03 0.60 -11.79 16 14 H 0.12 5.75 6.27 -2.91 -0.02 5.73 16 15 C 0.01 0.35 5.30 84.86 0.45 0.80 16 16 N -0.86 -38.73 8.00 21.65 0.17 -38.56 16 17 Si 0.99 36.75 29.56 68.60 2.03 38.78 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 19 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 21 C 0.15 6.38 5.54 85.63 0.47 6.85 16 22 C 0.49 20.45 6.15 71.24 0.44 20.89 16 23 O -0.54 -25.24 15.76 21.99 0.35 -24.89 16 24 O -0.52 -17.78 13.42 -51.47 -0.69 -18.47 16 25 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 26 H 0.10 4.76 2.15 -2.39 -0.01 4.75 16 27 H 0.07 2.84 7.80 -2.38 -0.02 2.82 16 28 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.15 4.77 7.33 -2.91 -0.02 4.75 16 31 H 0.28 12.02 8.31 -92.71 -0.77 11.25 16 32 H 0.14 6.03 6.26 -2.39 -0.01 6.02 16 33 H 0.10 3.82 7.07 -2.39 -0.02 3.80 16 34 H 0.41 10.44 9.10 -74.06 -0.67 9.76 16 Total: -1.00 -61.32 301.54 1.50 -59.82 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.51 Total: 31.36 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.40 Total: -23.31 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -0.65 Total: -75.87 kcal Atomic # 8 Polarization: -138.45 SS G_CDS: -4.26 Total: -142.70 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.75 Total: -4.68 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Atomic # 16 Polarization: 116.89 SS G_CDS: -0.29 Total: 116.61 kcal Total: -61.32 1.50 -59.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610417640.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.341 kcal (2) G-P(sol) polarization free energy of solvation -61.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds