Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00565 * 2 1 4 4 H 1.48490 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46707 * 299.99969 * 3 2 1 6 6 H 1.48498 * 109.46780 * 59.99354 * 3 2 1 7 7 C 1.37882 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47133 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47139 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54192 * 68.37539 * 11 10 9 13 13 O 1.42099 * 110.54406 * 291.62216 * 11 10 9 14 14 N 1.65603 * 104.45061 * 180.02562 * 11 10 9 15 15 C 1.34774 * 120.00517 * 64.99444 * 14 11 10 16 16 O 1.21608 * 119.99734 * 0.02562 * 15 14 11 17 17 C 1.47323 * 120.00246 * 180.02562 * 15 14 11 18 18 C 1.36578 * 125.79786 * 180.02562 * 17 15 14 19 19 C 1.40033 * 106.93823 * 179.97438 * 18 17 15 20 20 C 1.36647 * 106.91783 * 0.02562 * 19 18 17 21 21 C 1.47133 * 125.81722 * 179.97438 * 20 19 18 22 22 O 1.21535 * 119.99987 * 0.02562 * 21 20 19 23 23 O 1.34814 * 120.00466 * 180.02562 * 21 20 19 24 24 O 1.34530 * 125.79869 * 0.31315 * 17 15 14 25 25 H 0.97007 * 119.99926 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47302 * 59.99617 * 9 7 2 27 27 H 1.09006 * 109.46668 * 299.99530 * 9 7 2 28 28 H 1.09003 * 109.47555 * 59.99606 * 10 9 7 29 29 H 1.09004 * 109.47222 * 299.99689 * 10 9 7 30 30 H 0.97008 * 119.99932 * 245.00631 * 14 11 10 31 31 H 1.08000 * 126.52945 * 359.97130 * 18 17 15 32 32 H 1.08003 * 126.54335 * 180.02562 * 19 18 17 33 33 H 0.96700 * 117.00422 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 16 1.3381 -5.2330 0.0026 12 8 0.6646 -5.4205 -1.2346 13 8 0.6636 -5.4188 1.2394 14 7 2.5202 -6.3928 0.0047 15 6 3.3459 -6.5116 1.0632 16 8 3.2226 -5.7674 2.0170 17 6 4.3979 -7.5430 1.0647 18 6 5.2950 -7.7675 2.0698 19 6 6.1074 -8.8324 1.6611 20 6 5.6718 -9.2125 0.4229 21 6 6.2368 -10.2990 -0.3926 22 8 7.1753 -10.9479 0.0259 23 8 5.7134 -10.5747 -1.6040 24 8 4.6415 -8.4200 0.0741 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.8712 -3.6040 0.8922 29 1 2.8725 -3.6048 -0.8877 30 1 2.6185 -6.9866 -0.7561 31 1 5.3646 -7.2268 3.0021 32 1 6.9227 -9.2699 2.2182 33 1 6.1179 -11.2977 -2.1028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = -180.655539 kcal Electronic energy + Delta-G solvation = -23549.222383 eV Core-core repulsion = 19476.580424 eV Total energy + Delta-G solvation = -4072.641959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.46301 -40.59230 -40.05786 -36.82513 -36.81843 -35.75379 -34.86160 -33.96231 -33.71470 -31.25723 -31.11501 -26.23799 -25.65809 -23.52174 -22.04131 -21.75761 -21.24384 -19.66727 -19.34475 -18.74193 -17.95146 -17.71539 -17.37562 -16.60685 -16.08824 -15.72900 -15.62911 -15.13149 -14.85428 -14.57944 -14.37438 -13.94726 -13.78794 -13.68605 -13.52222 -12.64390 -12.52732 -12.25847 -11.88468 -11.82931 -11.74062 -11.66055 -11.18145 -11.10830 -11.04333 -10.92865 -10.76065 -10.43552 -10.41440 -9.77728 -9.52256 -9.22939 -8.53296 -6.15415 -4.21064 -0.16537 0.32944 1.13344 1.57109 2.21267 2.31544 2.42190 2.63053 3.24691 3.32012 3.35563 3.73112 3.97498 4.14974 4.34857 4.42995 4.51595 4.65214 4.82160 4.86455 5.20083 5.20949 5.48995 5.56532 5.62650 5.70607 5.95294 6.36575 6.42629 6.99846 7.15994 7.23809 7.29756 7.77786 8.12451 8.82163 9.43874 10.95682 Molecular weight = 317.05amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.002918 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.450228 B = 9593.992162 C =10014.787368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.561 3.439 12 O -0.945 6.945 13 O -0.933 6.933 14 N -1.050 6.050 15 C 0.626 3.374 16 O -0.455 6.455 17 C -0.031 4.031 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.031 4.031 21 C 0.573 3.427 22 O -0.486 6.486 23 O -0.500 6.500 24 O -0.136 6.136 25 H 0.265 0.735 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.133 0.867 29 H 0.124 0.876 30 H 0.434 0.566 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.088 -20.615 -0.953 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.082 0.918 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.662 3.338 12 O -0.936 6.936 13 O -0.923 6.923 14 N -0.810 5.810 15 C 0.410 3.590 16 O -0.326 6.326 17 C -0.087 4.087 18 C -0.146 4.146 19 C -0.133 4.133 20 C -0.083 4.083 21 C 0.416 3.584 22 O -0.375 6.375 23 O -0.312 6.312 24 O -0.031 6.031 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.151 0.849 29 H 0.143 0.857 30 H 0.270 0.730 31 H 0.198 0.802 32 H 0.195 0.805 33 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 11.804 -20.087 -0.197 23.299 hybrid contribution 1.391 0.316 -0.719 1.597 sum 13.195 -19.771 -0.915 23.787 Atomic orbital electron populations 1.69961 1.06124 1.27190 1.49501 1.25067 0.94997 0.99589 0.94811 0.86382 0.79934 0.83013 0.77776 1.19599 1.20789 1.20745 1.21008 0.93166 0.89486 1.52268 0.91839 1.19018 0.92613 0.90226 0.99183 1.30353 1.13773 1.15703 1.11023 1.06982 0.74902 0.77220 0.74695 1.93610 1.69994 1.85134 1.44869 1.93612 1.69904 1.84307 1.44460 1.55487 1.48599 1.50620 1.26300 1.16467 0.78957 0.81514 0.82055 1.91109 1.68359 1.40746 1.32420 1.22393 1.01278 0.95464 0.89544 1.22142 0.93842 0.97919 1.00659 1.22073 1.01122 0.96583 0.93509 1.20993 0.93913 0.96901 0.96494 1.18883 0.79674 0.80323 0.79493 1.91021 1.26466 1.48193 1.71792 1.84648 1.61006 1.55855 1.29669 1.84128 1.42140 1.36832 1.40038 0.92513 0.94618 0.94439 0.84921 0.85731 0.72975 0.80184 0.80538 0.71634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 10 C -0.57 -10.87 5.82 37.16 0.22 -10.66 16 11 S 2.56 44.73 5.11 -107.50 -0.55 44.18 16 12 O -0.95 -18.11 18.08 -57.54 -1.04 -19.15 16 13 O -0.93 -19.50 17.03 -64.80 -1.10 -20.61 16 14 N -1.05 -13.29 5.60 30.41 0.17 -13.12 16 15 C 0.63 8.17 7.55 -12.57 -0.09 8.08 16 16 O -0.46 -7.28 14.96 -11.88 -0.18 -7.46 16 17 C -0.03 -0.32 7.14 -36.49 -0.26 -0.58 16 18 C -0.13 -1.06 10.59 -39.51 -0.42 -1.48 16 19 C -0.11 -0.84 10.60 -39.48 -0.42 -1.26 16 20 C -0.03 -0.27 7.19 -36.55 -0.26 -0.53 16 21 C 0.57 4.51 8.32 34.34 0.29 4.80 16 22 O -0.49 -4.70 17.65 -19.29 -0.34 -5.04 16 23 O -0.50 -2.79 13.44 -42.23 -0.57 -3.35 16 24 O -0.14 -1.31 10.41 4.13 0.04 -1.27 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.13 2.42 7.19 -51.92 -0.37 2.04 16 29 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 30 H 0.43 4.02 8.55 -34.48 -0.29 3.73 16 31 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.42 0.20 9.11 45.56 0.42 0.62 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -37.42 324.63 -6.37 -43.79 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -1.91 Total: 0.60 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -1.50 Total: -14.05 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.91 Total: -38.56 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -3.19 Total: -56.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 44.73 SS G_CDS: -0.55 Total: 44.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.42 -6.37 -43.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.864 kcal (2) G-P(sol) polarization free energy of solvation -37.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds