Wall clock time and date at job start Tue Mar 31 2020 11:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00565 * 2 1 4 4 H 1.48490 * 109.47269 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46707 * 299.99969 * 3 2 1 6 6 H 1.48498 * 109.46780 * 59.99354 * 3 2 1 7 7 C 1.37882 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99956 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47133 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.47139 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54192 * 68.37539 * 11 10 9 13 13 O 1.42099 * 110.54406 * 291.62216 * 11 10 9 14 14 N 1.65603 * 104.45061 * 180.02562 * 11 10 9 15 15 C 1.34774 * 120.00517 * 64.99444 * 14 11 10 16 16 O 1.21608 * 119.99734 * 0.02562 * 15 14 11 17 17 C 1.47323 * 120.00246 * 180.02562 * 15 14 11 18 18 C 1.36578 * 125.79786 * 180.02562 * 17 15 14 19 19 C 1.40033 * 106.93823 * 179.97438 * 18 17 15 20 20 C 1.36647 * 106.91783 * 0.02562 * 19 18 17 21 21 C 1.47133 * 125.81722 * 179.97438 * 20 19 18 22 22 O 1.21535 * 119.99987 * 0.02562 * 21 20 19 23 23 O 1.34814 * 120.00466 * 180.02562 * 21 20 19 24 24 O 1.34530 * 125.79869 * 0.31315 * 17 15 14 25 25 H 0.97007 * 119.99926 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47302 * 59.99617 * 9 7 2 27 27 H 1.09006 * 109.46668 * 299.99530 * 9 7 2 28 28 H 1.09003 * 109.47555 * 59.99606 * 10 9 7 29 29 H 1.09004 * 109.47222 * 299.99689 * 10 9 7 30 30 H 0.97008 * 119.99932 * 245.00631 * 14 11 10 31 31 H 1.08000 * 126.52945 * 359.97130 * 18 17 15 32 32 H 1.08003 * 126.54335 * 180.02562 * 19 18 17 33 33 H 0.96700 * 117.00422 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 16 1.3381 -5.2330 0.0026 12 8 0.6646 -5.4205 -1.2346 13 8 0.6636 -5.4188 1.2394 14 7 2.5202 -6.3928 0.0047 15 6 3.3459 -6.5116 1.0632 16 8 3.2226 -5.7674 2.0170 17 6 4.3979 -7.5430 1.0647 18 6 5.2950 -7.7675 2.0698 19 6 6.1074 -8.8324 1.6611 20 6 5.6718 -9.2125 0.4229 21 6 6.2368 -10.2990 -0.3926 22 8 7.1753 -10.9479 0.0259 23 8 5.7134 -10.5747 -1.6040 24 8 4.6415 -8.4200 0.0741 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8904 28 1 2.8712 -3.6040 0.8922 29 1 2.8725 -3.6048 -0.8877 30 1 2.6185 -6.9866 -0.7561 31 1 5.3646 -7.2268 3.0021 32 1 6.9227 -9.2699 2.2182 33 1 6.1179 -11.2977 -2.1028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:26 Heat of formation + Delta-G solvation = -211.361769 kcal Electronic energy + Delta-G solvation = -23550.553905 eV Core-core repulsion = 19476.580424 eV Total energy + Delta-G solvation = -4073.973481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.054 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.16005 -41.34586 -40.97557 -38.36339 -37.35552 -37.30552 -36.03743 -35.86974 -34.42629 -33.18721 -31.85665 -27.67926 -26.97780 -24.32618 -23.60698 -22.79166 -21.99638 -20.87611 -20.27837 -19.49008 -19.21450 -18.58750 -18.41233 -18.10593 -17.36195 -16.94066 -16.61362 -16.56015 -16.41726 -15.95527 -15.21560 -14.97755 -14.66975 -14.49422 -14.39079 -14.30932 -13.93938 -13.77197 -13.43406 -13.32705 -12.96877 -12.84525 -12.78328 -12.42351 -12.36792 -12.26756 -12.09875 -12.02069 -11.73212 -11.39723 -11.10804 -10.65398 -10.24373 -8.26653 -6.40295 -1.13433 -0.89816 0.40213 0.85403 1.23818 1.41941 1.42727 1.48406 1.56014 1.63752 1.90432 2.37174 2.49823 2.84833 3.07280 3.10936 3.51071 3.62046 3.93384 3.96625 4.01887 4.15795 4.22054 4.65997 4.68995 4.93980 5.15051 5.23681 5.24669 5.32039 5.54447 5.67753 5.99953 6.04972 6.72759 6.75112 7.29776 8.85909 Molecular weight = 317.05amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.002918 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.450228 B = 9593.992162 C =10014.787368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.576 4.576 11 S 2.598 3.402 12 O -0.963 6.963 13 O -0.969 6.969 14 N -1.034 6.034 15 C 0.629 3.371 16 O -0.489 6.489 17 C -0.052 4.052 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.035 4.035 21 C 0.581 3.419 22 O -0.506 6.506 23 O -0.497 6.497 24 O -0.141 6.141 25 H 0.268 0.732 26 H 0.017 0.983 27 H 0.009 0.991 28 H 0.141 0.859 29 H 0.154 0.846 30 H 0.451 0.549 31 H 0.196 0.804 32 H 0.202 0.798 33 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.578 -21.555 -1.242 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.709 4.709 11 S 2.697 3.303 12 O -0.953 6.953 13 O -0.959 6.959 14 N -0.799 5.799 15 C 0.416 3.584 16 O -0.362 6.362 17 C -0.108 4.108 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.087 4.087 21 C 0.425 3.575 22 O -0.396 6.396 23 O -0.312 6.312 24 O -0.037 6.037 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.027 0.973 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.291 0.709 31 H 0.213 0.787 32 H 0.219 0.781 33 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 14.302 -21.050 -0.533 25.455 hybrid contribution 0.675 0.434 -0.672 1.047 sum 14.978 -20.616 -1.205 25.511 Atomic orbital electron populations 1.70097 1.07997 1.28334 1.50789 1.26095 0.95879 1.03807 0.94323 0.85255 0.79143 0.77982 0.77812 1.18000 1.20191 1.20481 1.21512 0.94017 0.90626 1.51645 0.90617 1.18860 0.93477 0.92525 0.96944 1.30241 1.12922 1.14800 1.12984 1.05592 0.74522 0.76783 0.73378 1.93581 1.70916 1.85411 1.45428 1.93565 1.71337 1.84854 1.46158 1.54918 1.47808 1.49818 1.27319 1.16713 0.78951 0.81588 0.81178 1.91095 1.69335 1.42289 1.33460 1.21873 1.01791 0.96240 0.90916 1.22451 0.92580 0.97442 1.00422 1.22381 1.01186 0.95780 0.93088 1.21371 0.93461 0.96767 0.97129 1.18734 0.79175 0.79780 0.79839 1.91022 1.27352 1.48856 1.72388 1.84613 1.60916 1.56829 1.28873 1.84099 1.42691 1.36958 1.39903 0.92315 0.96499 0.97276 0.84093 0.82759 0.70887 0.78698 0.78101 0.69111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.09 4.98 29.85 0.15 1.24 16 10 C -0.58 -21.81 5.82 71.98 0.42 -21.39 16 11 S 2.60 90.94 5.11 -56.49 -0.29 90.65 16 12 O -0.96 -36.81 18.08 -127.65 -2.31 -39.12 16 13 O -0.97 -41.34 17.03 -120.71 -2.06 -43.40 16 14 N -1.03 -25.15 5.60 -175.97 -0.99 -26.13 16 15 C 0.63 15.79 7.55 86.63 0.65 16.44 16 16 O -0.49 -15.42 14.96 12.34 0.18 -15.23 16 17 C -0.05 -1.00 7.14 24.27 0.17 -0.83 16 18 C -0.11 -1.59 10.59 22.32 0.24 -1.35 16 19 C -0.11 -1.26 10.60 22.33 0.24 -1.03 16 20 C -0.04 -0.52 7.19 24.23 0.17 -0.35 16 21 C 0.58 7.79 8.32 70.16 0.58 8.37 16 22 O -0.51 -8.67 17.65 19.72 0.35 -8.32 16 23 O -0.50 -4.32 13.44 -55.90 -0.75 -5.07 16 24 O -0.14 -2.42 10.41 -7.17 -0.07 -2.49 16 25 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.14 5.11 7.19 -2.39 -0.02 5.09 16 29 H 0.15 4.81 8.14 -2.39 -0.02 4.79 16 30 H 0.45 7.69 8.55 -96.73 -0.83 6.86 16 31 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.44 -0.71 9.11 -74.06 -0.67 -1.39 16 Total: -1.00 -81.54 324.63 -0.60 -82.13 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -0.30 Total: 5.87 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.32 Total: -28.04 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -0.70 Total: -82.11 kcal Atomic # 8 Polarization: -108.98 SS G_CDS: -4.66 Total: -113.63 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 90.94 SS G_CDS: -0.29 Total: 90.65 kcal Total: -81.54 -0.60 -82.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.231 kcal (2) G-P(sol) polarization free energy of solvation -81.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds