Wall clock time and date at job start Tue Mar 31 2020 11:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47537 * 239.99952 * 3 2 1 5 5 H 1.48504 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47030 * 119.99888 * 3 2 1 7 7 C 1.37882 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47458 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47423 * 180.02562 * 11 10 9 13 13 C 1.38951 * 111.00273 * 175.16610 * 12 11 10 14 14 C 1.39058 * 120.17310 * 275.47394 * 13 12 11 15 15 Cl 1.73601 * 119.96594 * 359.97438 * 14 13 12 16 16 C 1.38024 * 120.06056 * 180.02562 * 14 13 12 17 17 C 1.38726 * 120.41751 * 0.02562 * 16 14 13 18 18 Cl 1.73599 * 119.83058 * 179.97438 * 17 16 14 19 19 C 1.37806 * 120.34090 * 0.02562 * 17 16 14 20 20 C 1.39839 * 119.92650 * 359.67864 * 19 17 16 21 21 C 1.47292 * 120.20376 * 180.32569 * 20 19 17 22 22 O 1.21520 * 120.00067 * 185.58675 * 21 20 19 23 23 O 1.34768 * 120.00080 * 5.57916 * 21 20 19 24 24 H 0.96995 * 119.99711 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46837 * 60.00005 * 9 7 2 26 26 H 1.09000 * 109.47214 * 300.00558 * 9 7 2 27 27 H 1.09002 * 109.46723 * 59.99824 * 10 9 7 28 28 H 1.09000 * 109.47550 * 300.00537 * 10 9 7 29 29 H 1.08995 * 109.47268 * 300.00282 * 11 10 9 30 30 H 1.09002 * 109.47288 * 60.00181 * 11 10 9 31 31 H 1.00904 * 110.99780 * 51.21213 * 12 11 10 32 32 H 1.08006 * 119.78753 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.03500 * 179.97438 * 19 17 16 34 34 H 0.96698 * 117.00316 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 6 1.4801 -4.9871 0.0033 12 7 2.4347 -6.1037 0.0037 13 6 1.7758 -7.3220 0.1146 14 6 1.4212 -7.8134 1.3662 15 17 1.8026 -6.9038 2.7948 16 6 0.7673 -9.0242 1.4738 17 6 0.4594 -9.7594 0.3384 18 17 -0.3628 -11.2807 0.4914 19 6 0.8038 -9.2890 -0.9102 20 6 1.4612 -8.0611 -1.0362 21 6 1.8257 -7.5491 -2.3683 22 8 2.4853 -6.5335 -2.4692 23 8 1.4280 -8.2070 -3.4752 24 1 -0.4849 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6040 0.8909 28 1 2.8712 -3.6049 -0.8890 29 1 0.8545 -5.0442 0.8939 30 1 0.8525 -5.0455 -0.8860 31 1 3.1187 -5.9944 0.7373 32 1 0.4936 -9.4015 2.4481 33 1 0.5621 -9.8656 -1.7908 34 1 1.6918 -7.8329 -4.3269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:42 Heat of formation + Delta-G solvation = -81.032372 kcal Electronic energy + Delta-G solvation = -21298.580864 eV Core-core repulsion = 17668.924348 eV Total energy + Delta-G solvation = -3629.656516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 5.30 seconds Orbital eigenvalues (eV) -40.79497 -39.24458 -37.37480 -36.73478 -36.18971 -35.77189 -33.58272 -31.78822 -31.52740 -29.08802 -26.24991 -24.84351 -23.14276 -22.47965 -21.15044 -20.25464 -18.44705 -17.65152 -17.01689 -16.43833 -16.23872 -15.64459 -15.53635 -15.02152 -14.75162 -14.44048 -14.39330 -13.67593 -13.64809 -12.88833 -12.67372 -12.53096 -12.24614 -11.82241 -11.67047 -11.57852 -11.53045 -11.27818 -11.23574 -10.85203 -10.61379 -10.56166 -10.51509 -9.73365 -9.48164 -9.39608 -9.21403 -9.02061 -8.35661 -8.32054 -5.97609 -3.99595 0.18949 0.53312 1.42605 1.88206 2.28475 2.87887 3.18225 3.35538 3.39398 3.42409 3.87831 4.34797 4.48398 4.49904 4.64655 4.81086 5.16903 5.30016 5.38222 5.50902 5.61223 5.67321 5.82873 5.88669 6.21300 6.45022 6.63747 6.71642 7.10414 7.14572 7.32287 7.69426 7.83885 7.91747 8.02299 8.45158 9.06979 9.64106 11.13869 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.003206 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.590766 B = 8732.756462 C = 9659.622752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.073 3.927 12 N -0.633 5.633 13 C 0.192 3.808 14 C -0.086 4.086 15 Cl -0.037 7.037 16 C -0.055 4.055 17 C -0.056 4.056 18 Cl -0.054 7.054 19 C -0.040 4.040 20 C -0.098 4.098 21 C 0.517 3.483 22 O -0.453 6.453 23 O -0.522 6.522 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.014 0.986 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.358 0.642 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -24.428 0.204 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.144 4.144 11 C -0.051 4.051 12 N -0.262 5.262 13 C 0.091 3.909 14 C -0.116 4.116 15 Cl -0.007 7.007 16 C -0.075 4.075 17 C -0.084 4.084 18 Cl -0.025 7.025 19 C -0.059 4.059 20 C -0.101 4.101 21 C 0.357 3.643 22 O -0.337 6.337 23 O -0.336 6.336 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 0.634 -24.161 0.018 24.169 hybrid contribution 0.302 1.052 0.569 1.234 sum 0.936 -23.109 0.587 23.135 Atomic orbital electron populations 1.69955 1.06052 1.26668 1.50921 1.25021 0.94849 0.99238 0.95368 0.86652 0.79571 0.83105 0.78635 1.20205 1.21324 1.20269 1.21199 0.93041 0.90958 1.50492 0.92660 1.19037 0.93916 0.91178 0.97163 1.21657 0.99342 0.92220 1.01193 1.22217 0.93353 0.88967 1.00563 1.57768 1.16254 0.99137 1.53003 1.18685 0.90666 0.92415 0.89095 1.21561 1.04712 0.96093 0.89280 1.98423 1.92788 1.73257 1.36276 1.21036 0.95386 0.91940 0.99153 1.20495 1.03105 0.90721 0.94036 1.98391 1.77162 1.28779 1.98193 1.21382 0.93443 0.94051 0.97062 1.18720 1.05703 0.95404 0.90291 1.20208 0.77897 0.81887 0.84266 1.91063 1.33729 1.22283 1.86656 1.84511 1.74359 1.56942 1.17745 0.92985 0.96548 0.96728 0.93377 0.91913 0.94475 0.91090 0.81921 0.83325 0.82654 0.72582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 10 C -0.11 -2.24 5.36 -26.74 -0.14 -2.39 16 11 C 0.07 1.31 5.27 -3.83 -0.02 1.29 16 12 N -0.63 -9.69 4.29 -58.13 -0.25 -9.93 16 13 C 0.19 2.54 5.26 -83.54 -0.44 2.10 16 14 C -0.09 -0.99 6.27 -39.36 -0.25 -1.24 16 15 Cl -0.04 -0.43 27.08 -51.86 -1.40 -1.83 16 16 C -0.06 -0.52 9.58 -39.48 -0.38 -0.90 16 17 C -0.06 -0.52 6.31 -39.56 -0.25 -0.77 16 18 Cl -0.05 -0.44 28.94 -51.86 -1.50 -1.94 16 19 C -0.04 -0.38 9.38 -39.14 -0.37 -0.75 16 20 C -0.10 -1.19 5.89 -104.82 -0.62 -1.80 16 21 C 0.52 6.67 8.25 34.41 0.28 6.95 16 22 O -0.45 -7.52 15.63 -19.28 -0.30 -7.82 16 23 O -0.52 -4.80 12.69 -40.68 -0.52 -5.31 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.04 0.65 7.52 -51.93 -0.39 0.26 16 30 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 31 H 0.36 5.14 7.63 -39.29 -0.30 4.84 16 32 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.16 1.22 7.62 -52.49 -0.40 0.82 16 34 H 0.42 2.17 9.11 45.56 0.42 2.58 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -32.64 330.59 -8.76 -41.40 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.75 Total: 0.75 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.73 Total: -10.72 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.49 Total: -36.47 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.82 Total: -13.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -2.91 Total: -3.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.64 -8.76 -41.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.636 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.30 seconds