Wall clock time and date at job start Tue Mar 31 2020 11:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47537 * 239.99952 * 3 2 1 5 5 H 1.48504 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47030 * 119.99888 * 3 2 1 7 7 C 1.37882 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47388 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47458 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47423 * 180.02562 * 11 10 9 13 13 C 1.38951 * 111.00273 * 175.16610 * 12 11 10 14 14 C 1.39058 * 120.17310 * 275.47394 * 13 12 11 15 15 Cl 1.73601 * 119.96594 * 359.97438 * 14 13 12 16 16 C 1.38024 * 120.06056 * 180.02562 * 14 13 12 17 17 C 1.38726 * 120.41751 * 0.02562 * 16 14 13 18 18 Cl 1.73599 * 119.83058 * 179.97438 * 17 16 14 19 19 C 1.37806 * 120.34090 * 0.02562 * 17 16 14 20 20 C 1.39839 * 119.92650 * 359.67864 * 19 17 16 21 21 C 1.47292 * 120.20376 * 180.32569 * 20 19 17 22 22 O 1.21520 * 120.00067 * 185.58675 * 21 20 19 23 23 O 1.34768 * 120.00080 * 5.57916 * 21 20 19 24 24 H 0.96995 * 119.99711 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46837 * 60.00005 * 9 7 2 26 26 H 1.09000 * 109.47214 * 300.00558 * 9 7 2 27 27 H 1.09002 * 109.46723 * 59.99824 * 10 9 7 28 28 H 1.09000 * 109.47550 * 300.00537 * 10 9 7 29 29 H 1.08995 * 109.47268 * 300.00282 * 11 10 9 30 30 H 1.09002 * 109.47288 * 60.00181 * 11 10 9 31 31 H 1.00904 * 110.99780 * 51.21213 * 12 11 10 32 32 H 1.08006 * 119.78753 * 180.02562 * 16 14 13 33 33 H 1.07998 * 120.03500 * 179.97438 * 19 17 16 34 34 H 0.96698 * 117.00316 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0015 11 6 1.4801 -4.9871 0.0033 12 7 2.4347 -6.1037 0.0037 13 6 1.7758 -7.3220 0.1146 14 6 1.4212 -7.8134 1.3662 15 17 1.8026 -6.9038 2.7948 16 6 0.7673 -9.0242 1.4738 17 6 0.4594 -9.7594 0.3384 18 17 -0.3628 -11.2807 0.4914 19 6 0.8038 -9.2890 -0.9102 20 6 1.4612 -8.0611 -1.0362 21 6 1.8257 -7.5491 -2.3683 22 8 2.4853 -6.5335 -2.4692 23 8 1.4280 -8.2070 -3.4752 24 1 -0.4849 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6040 0.8909 28 1 2.8712 -3.6049 -0.8890 29 1 0.8545 -5.0442 0.8939 30 1 0.8525 -5.0455 -0.8860 31 1 3.1187 -5.9944 0.7373 32 1 0.4936 -9.4015 2.4481 33 1 0.5621 -9.8656 -1.7908 34 1 1.6918 -7.8329 -4.3269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:39 Heat of formation + Delta-G solvation = -101.151148 kcal Electronic energy + Delta-G solvation = -21299.453280 eV Core-core repulsion = 17668.924348 eV Total energy + Delta-G solvation = -3630.528932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.73788 -40.17715 -38.27102 -37.69259 -37.15228 -36.83935 -35.47907 -33.37237 -32.60919 -30.36210 -27.96400 -25.86717 -24.67250 -23.63035 -22.11031 -22.04901 -19.33580 -18.59278 -18.52073 -18.01604 -17.27122 -16.66629 -16.54621 -16.38133 -16.09241 -15.85249 -15.76474 -14.74292 -14.57526 -14.30071 -13.89934 -13.81486 -13.50599 -13.31716 -13.22136 -12.73543 -12.55411 -12.53917 -12.42921 -12.29112 -12.13533 -12.08420 -11.69728 -11.50808 -11.44831 -11.21042 -10.55538 -10.29316 -10.18431 -9.43175 -8.20507 -6.31524 -0.68745 -0.33226 0.60038 1.06849 1.37619 1.39437 1.42874 1.50736 2.03701 2.26672 2.40801 2.80942 3.12517 3.54867 3.69461 3.82696 3.88575 4.10366 4.20430 4.31888 4.48169 4.60007 4.70243 4.86821 4.89168 4.98444 5.11709 5.18766 5.49597 5.66225 5.69378 5.82147 5.84319 6.17737 6.24721 6.84216 7.06619 7.37375 8.91339 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.003206 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.590766 B = 8732.756462 C = 9659.622752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.090 4.090 11 C 0.093 3.907 12 N -0.636 5.636 13 C 0.168 3.832 14 C -0.089 4.089 15 Cl -0.042 7.042 16 C -0.046 4.046 17 C -0.050 4.050 18 Cl -0.036 7.036 19 C -0.027 4.027 20 C -0.110 4.110 21 C 0.521 3.479 22 O -0.500 6.500 23 O -0.507 6.507 24 H 0.264 0.736 25 H -0.011 1.011 26 H -0.005 1.005 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.360 0.640 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -25.896 0.423 25.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.128 4.128 11 C -0.033 4.033 12 N -0.265 5.265 13 C 0.068 3.932 14 C -0.119 4.119 15 Cl -0.013 7.013 16 C -0.066 4.066 17 C -0.077 4.077 18 Cl -0.007 7.007 19 C -0.047 4.047 20 C -0.114 4.114 21 C 0.364 3.636 22 O -0.388 6.388 23 O -0.322 6.322 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.013 0.987 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.189 0.811 33 H 0.194 0.806 34 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 0.860 -25.679 0.218 25.695 hybrid contribution 0.143 1.330 0.468 1.417 sum 1.002 -24.350 0.686 24.380 Atomic orbital electron populations 1.70088 1.07768 1.27858 1.51577 1.25980 0.95798 1.03342 0.94660 0.85500 0.78297 0.78052 0.79204 1.19304 1.20673 1.19054 1.21642 0.93535 0.92317 1.50706 0.92253 1.18909 0.94239 0.92839 0.94780 1.21365 0.98157 0.92329 1.00966 1.21778 0.93099 0.88575 0.99828 1.57548 1.16062 0.99295 1.53588 1.18746 0.92261 0.91914 0.90301 1.21531 1.05174 0.96713 0.88453 1.98422 1.92894 1.73596 1.36386 1.21268 0.93989 0.90914 1.00395 1.20569 1.02261 0.91125 0.93735 1.98408 1.76664 1.27498 1.98136 1.21551 0.92041 0.92968 0.98107 1.18808 1.06461 0.96390 0.89696 1.20391 0.76841 0.81176 0.85211 1.91046 1.36045 1.24328 1.87372 1.84467 1.73563 1.56164 1.18047 0.92726 0.99300 0.98695 0.92488 0.93024 0.94368 0.92624 0.81611 0.81104 0.80565 0.70505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.64 4.97 29.85 0.15 1.79 16 10 C -0.09 -3.93 5.36 30.59 0.16 -3.77 16 11 C 0.09 3.40 5.27 86.30 0.45 3.86 16 12 N -0.64 -19.75 4.29 -337.82 -1.45 -21.19 16 13 C 0.17 4.36 5.26 38.72 0.20 4.56 16 14 C -0.09 -1.94 6.27 22.42 0.14 -1.80 16 15 Cl -0.04 -0.95 27.08 -2.72 -0.07 -1.03 16 16 C -0.05 -0.77 9.58 22.34 0.21 -0.55 16 17 C -0.05 -0.78 6.31 22.28 0.14 -0.64 16 18 Cl -0.04 -0.48 28.94 -2.72 -0.08 -0.56 16 19 C -0.03 -0.47 9.38 22.56 0.21 -0.25 16 20 C -0.11 -2.57 5.89 -20.00 -0.12 -2.69 16 21 C 0.52 13.21 8.25 70.20 0.58 13.79 16 22 O -0.50 -16.92 15.63 19.77 0.31 -16.61 16 23 O -0.51 -8.53 12.69 -56.79 -0.72 -9.25 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.37 7.52 -2.39 -0.02 1.35 16 30 H 0.06 2.20 8.13 -2.39 -0.02 2.18 16 31 H 0.36 10.47 7.63 -89.69 -0.68 9.79 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.18 2.21 7.62 -2.91 -0.02 2.18 16 34 H 0.43 3.89 9.11 -74.06 -0.67 3.22 16 Total: -1.00 -71.20 330.59 2.94 -68.26 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -0.19 Total: 7.64 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 2.83 Total: -16.96 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -1.16 Total: -78.69 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.41 Total: -25.86 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.15 Total: -1.58 kcal Total: -71.20 2.94 -68.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.887 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds