Wall clock time and date at job start Tue Mar 31 2020 11:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47397 * 235.08466 * 3 2 1 5 5 H 1.48501 * 109.47238 * 355.08147 * 3 2 1 6 6 H 1.48502 * 109.47311 * 115.08342 * 3 2 1 7 7 C 1.38815 * 119.99778 * 179.72251 * 2 1 3 8 8 H 1.07993 * 119.99977 * 352.53261 * 7 2 1 9 9 N 1.36930 * 119.99694 * 172.52700 * 7 2 1 10 10 C 1.47069 * 136.06266 * 6.44515 * 9 7 2 11 11 C 1.53755 * 87.88849 * 152.95924 * 10 9 7 12 12 O 1.42901 * 114.57796 * 272.66178 * 11 10 9 13 13 C 1.53000 * 114.08295 * 139.78275 * 11 10 9 14 14 N 1.46506 * 109.47164 * 86.56312 * 13 11 10 15 15 C 1.34779 * 119.99876 * 179.97438 * 14 13 11 16 16 O 1.21642 * 119.99866 * 359.97438 * 15 14 13 17 17 C 1.47144 * 120.00080 * 179.97438 * 15 14 13 18 18 N 1.30569 * 125.52799 * 359.69495 * 17 15 14 19 19 C 1.30665 * 115.93050 * 179.77940 * 18 17 15 20 20 C 1.34438 * 115.74064 * 0.51943 * 19 18 17 21 21 Cl 1.73599 * 125.46320 * 179.74384 * 20 19 18 22 22 S 1.71067 * 109.07259 * 359.72209 * 20 19 18 23 23 C 1.47074 * 136.05482 * 186.80721 * 9 7 2 24 24 H 0.96996 * 119.99886 * 184.77407 * 1 2 3 25 25 H 1.08992 * 113.46878 * 267.69605 * 10 9 7 26 26 H 1.09002 * 113.46558 * 38.13037 * 10 9 7 27 27 H 0.96698 * 114.00651 * 273.67882 * 12 11 10 28 28 H 1.09001 * 109.46898 * 206.55720 * 13 11 10 29 29 H 1.09002 * 109.47563 * 326.55919 * 13 11 10 30 30 H 0.96993 * 120.00149 * 359.97438 * 14 13 11 31 31 H 1.08000 * 122.12891 * 180.25913 * 19 18 17 32 32 H 1.08994 * 113.47170 * 321.87267 * 23 9 7 33 33 H 1.09001 * 113.46278 * 92.31143 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1918 1.6457 -1.1480 5 1 1.2898 2.7439 -0.1200 6 1 3.0118 1.7496 1.2680 7 6 2.0103 -1.2022 0.0058 8 1 1.4771 -2.1328 0.1319 9 7 3.3708 -1.2079 -0.1484 10 6 4.4323 -0.1929 -0.2249 11 6 5.4046 -1.2503 0.3233 12 8 5.4623 -1.3222 1.7493 13 6 6.7844 -1.2320 -0.3375 14 7 7.6430 -0.2652 0.3513 15 6 8.9127 -0.0785 -0.0603 16 8 9.3459 -0.7129 -1.0034 17 6 9.7750 0.8929 0.6312 18 7 9.4214 1.6329 1.6472 19 6 10.3413 2.4311 2.1203 20 6 11.5283 2.3924 1.4902 21 17 12.9188 3.3465 1.9020 22 16 11.4487 1.2516 0.2179 23 6 4.4132 -2.2318 -0.3168 24 1 -0.4850 -0.8371 0.0699 25 1 4.6608 0.1202 -1.2436 26 1 4.2777 0.6486 0.4505 27 1 6.0877 -0.7026 2.1495 28 1 7.2309 -2.2244 -0.2739 29 1 6.6822 -0.9460 -1.3844 30 1 7.2977 0.2404 1.1036 31 1 10.1584 3.0837 2.9612 32 1 4.2423 -3.1275 0.2804 33 1 4.6366 -2.4562 -1.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754770747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:47 Heat of formation + Delta-G solvation = 36.406712 kcal Electronic energy + Delta-G solvation = -21348.150596 eV Core-core repulsion = 17757.923078 eV Total energy + Delta-G solvation = -3590.227518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -40.72503 -39.83443 -38.93501 -37.45625 -35.39766 -34.32186 -32.30686 -31.10560 -29.00775 -27.07273 -25.63381 -25.56336 -22.69286 -21.45813 -20.52872 -19.69370 -19.35499 -18.02191 -17.50898 -16.69121 -16.20043 -16.08429 -15.80880 -15.07870 -14.84372 -14.58178 -14.39653 -13.98286 -13.75330 -13.31252 -13.17473 -12.83278 -12.72693 -12.63679 -12.12051 -11.65601 -11.50567 -11.06862 -10.91452 -10.57989 -10.47669 -10.19167 -10.10793 -10.01996 -9.57360 -9.33612 -9.22145 -8.97171 -8.87568 -7.17812 -6.32771 -3.23114 -0.46569 0.14629 0.92801 1.45302 1.73959 2.73983 2.76363 3.37551 3.42139 3.60456 3.62922 4.20336 4.35313 4.50792 4.58087 4.59348 4.73276 4.96977 5.33025 5.41457 5.49210 5.70130 5.91887 6.07112 6.08915 6.19188 6.30808 6.49227 6.74280 7.05156 7.07524 7.66976 7.84611 8.23093 8.96729 9.48377 10.32136 11.20251 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.002964 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.740916 B = 9444.152787 C =10162.473142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.026 4.026 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.300 4.300 8 H 0.084 0.916 9 N -0.617 5.617 10 C 0.076 3.924 11 C 0.070 3.930 12 O -0.518 6.518 13 C 0.104 3.896 14 N -0.698 5.698 15 C 0.599 3.401 16 O -0.522 6.522 17 C -0.013 4.013 18 N -0.413 5.413 19 C 0.050 3.950 20 C -0.221 4.221 21 Cl 0.015 6.985 22 S 0.303 5.697 23 C 0.140 3.860 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.364 0.636 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.409 0.591 31 H 0.188 0.812 32 H 0.058 0.942 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.290 4.929 2.874 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.224 4.224 3 Si 0.905 3.095 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.426 4.426 8 H 0.102 0.898 9 N -0.345 5.345 10 C -0.050 4.050 11 C 0.027 3.973 12 O -0.322 6.322 13 C -0.021 4.021 14 N -0.351 5.351 15 C 0.380 3.620 16 O -0.398 6.398 17 C -0.287 4.287 18 N -0.131 5.131 19 C -0.110 4.110 20 C -0.371 4.371 21 Cl 0.044 6.956 22 S 0.558 5.442 23 C 0.013 3.987 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.211 0.789 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.246 0.754 31 H 0.205 0.795 32 H 0.076 0.924 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 27.891 5.260 1.498 28.422 hybrid contribution 0.437 -0.130 1.459 1.529 sum 28.329 5.130 2.958 28.941 Atomic orbital electron populations 1.70921 1.05276 1.29421 1.52025 1.25730 0.96477 1.00955 0.99257 0.83670 0.73822 0.75980 0.76021 1.21510 1.22197 1.22152 1.20112 0.78106 0.95965 1.48456 0.89789 1.45690 1.02078 1.01289 1.85402 1.23512 0.88421 0.94342 0.98704 1.23343 0.90647 1.01427 0.81894 1.86679 1.65505 1.62684 1.17293 1.22160 0.89563 0.92769 0.97581 1.45698 1.11255 1.42544 1.35573 1.16564 0.81558 0.80974 0.82860 1.90898 1.73857 1.47547 1.27503 1.27722 0.97350 1.03843 0.99809 1.66954 1.32487 1.05004 1.08618 1.21849 0.86607 1.00073 1.02452 1.26782 0.96690 1.07002 1.06623 1.98404 1.36511 1.68418 1.92304 1.84275 1.08329 1.27797 1.23844 1.22335 0.85608 0.93664 0.97068 0.92886 0.92748 0.92589 0.78902 0.89744 0.89234 0.75426 0.79478 0.92357 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.77 13.70 55.49 0.76 -29.01 16 2 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 3 Si 1.07 26.94 25.13 -169.99 -4.27 22.67 16 4 H -0.29 -6.66 6.13 56.52 0.35 -6.31 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.29 -6.99 6.65 56.52 0.38 -6.61 16 7 C -0.30 -8.77 11.08 -15.06 -0.17 -8.94 16 8 H 0.08 2.58 8.05 -52.49 -0.42 2.16 16 9 N -0.62 -15.20 3.70 -184.58 -0.68 -15.89 16 10 C 0.08 1.56 5.15 -8.37 -0.04 1.51 16 11 C 0.07 1.16 1.74 -89.97 -0.16 1.00 16 12 O -0.52 -8.66 13.56 -35.23 -0.48 -9.14 16 13 C 0.10 1.34 5.42 -4.04 -0.02 1.32 16 14 N -0.70 -8.14 5.34 -61.47 -0.33 -8.47 16 15 C 0.60 7.31 7.80 -12.65 -0.10 7.21 16 16 O -0.52 -7.55 16.94 5.24 0.09 -7.46 16 17 C -0.01 -0.13 7.45 -14.48 -0.11 -0.24 16 18 N -0.41 -4.10 10.24 -11.50 -0.12 -4.22 16 19 C 0.05 0.40 11.21 -19.39 -0.22 0.18 16 20 C -0.22 -1.68 6.95 29.39 0.20 -1.48 16 21 Cl 0.02 0.10 29.30 -51.86 -1.52 -1.42 16 22 S 0.30 2.47 23.03 -107.50 -2.48 0.00 16 23 C 0.14 2.70 8.10 -8.50 -0.07 2.64 16 24 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 25 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 26 H 0.06 1.20 4.65 -51.93 -0.24 0.95 16 27 H 0.36 4.45 7.21 45.56 0.33 4.78 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.16 7.89 -51.93 -0.41 0.75 16 30 H 0.41 4.30 6.60 -40.82 -0.27 4.03 16 31 H 0.19 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -34.80 314.30 -7.39 -42.19 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -2.33 Total: 3.67 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.77 Total: 2.34 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.37 Total: -57.58 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.39 Total: -16.60 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.27 Total: 22.67 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.48 Total: 0.00 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.52 Total: -1.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.80 -7.39 -42.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.592 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds