Wall clock time and date at job start Tue Mar 31 2020 11:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47397 * 235.08466 * 3 2 1 5 5 H 1.48501 * 109.47238 * 355.08147 * 3 2 1 6 6 H 1.48502 * 109.47311 * 115.08342 * 3 2 1 7 7 C 1.38815 * 119.99778 * 179.72251 * 2 1 3 8 8 H 1.07993 * 119.99977 * 352.53261 * 7 2 1 9 9 N 1.36930 * 119.99694 * 172.52700 * 7 2 1 10 10 C 1.47069 * 136.06266 * 6.44515 * 9 7 2 11 11 C 1.53755 * 87.88849 * 152.95924 * 10 9 7 12 12 O 1.42901 * 114.57796 * 272.66178 * 11 10 9 13 13 C 1.53000 * 114.08295 * 139.78275 * 11 10 9 14 14 N 1.46506 * 109.47164 * 86.56312 * 13 11 10 15 15 C 1.34779 * 119.99876 * 179.97438 * 14 13 11 16 16 O 1.21642 * 119.99866 * 359.97438 * 15 14 13 17 17 C 1.47144 * 120.00080 * 179.97438 * 15 14 13 18 18 N 1.30569 * 125.52799 * 359.69495 * 17 15 14 19 19 C 1.30665 * 115.93050 * 179.77940 * 18 17 15 20 20 C 1.34438 * 115.74064 * 0.51943 * 19 18 17 21 21 Cl 1.73599 * 125.46320 * 179.74384 * 20 19 18 22 22 S 1.71067 * 109.07259 * 359.72209 * 20 19 18 23 23 C 1.47074 * 136.05482 * 186.80721 * 9 7 2 24 24 H 0.96996 * 119.99886 * 184.77407 * 1 2 3 25 25 H 1.08992 * 113.46878 * 267.69605 * 10 9 7 26 26 H 1.09002 * 113.46558 * 38.13037 * 10 9 7 27 27 H 0.96698 * 114.00651 * 273.67882 * 12 11 10 28 28 H 1.09001 * 109.46898 * 206.55720 * 13 11 10 29 29 H 1.09002 * 109.47563 * 326.55919 * 13 11 10 30 30 H 0.96993 * 120.00149 * 359.97438 * 14 13 11 31 31 H 1.08000 * 122.12891 * 180.25913 * 19 18 17 32 32 H 1.08994 * 113.47170 * 321.87267 * 23 9 7 33 33 H 1.09001 * 113.46278 * 92.31143 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1918 1.6457 -1.1480 5 1 1.2898 2.7439 -0.1200 6 1 3.0118 1.7496 1.2680 7 6 2.0103 -1.2022 0.0058 8 1 1.4771 -2.1328 0.1319 9 7 3.3708 -1.2079 -0.1484 10 6 4.4323 -0.1929 -0.2249 11 6 5.4046 -1.2503 0.3233 12 8 5.4623 -1.3222 1.7493 13 6 6.7844 -1.2320 -0.3375 14 7 7.6430 -0.2652 0.3513 15 6 8.9127 -0.0785 -0.0603 16 8 9.3459 -0.7129 -1.0034 17 6 9.7750 0.8929 0.6312 18 7 9.4214 1.6329 1.6472 19 6 10.3413 2.4311 2.1203 20 6 11.5283 2.3924 1.4902 21 17 12.9188 3.3465 1.9020 22 16 11.4487 1.2516 0.2179 23 6 4.4132 -2.2318 -0.3168 24 1 -0.4850 -0.8371 0.0699 25 1 4.6608 0.1202 -1.2436 26 1 4.2777 0.6486 0.4505 27 1 6.0877 -0.7026 2.1495 28 1 7.2309 -2.2244 -0.2739 29 1 6.6822 -0.9460 -1.3844 30 1 7.2977 0.2404 1.1036 31 1 10.1584 3.0837 2.9612 32 1 4.2423 -3.1275 0.2804 33 1 4.6366 -2.4562 -1.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754770747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:47 Heat of formation + Delta-G solvation = 6.566032 kcal Electronic energy + Delta-G solvation = -21349.444585 eV Core-core repulsion = 17757.923078 eV Total energy + Delta-G solvation = -3591.521507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.039 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62483 -40.92819 -40.02242 -38.01801 -36.82118 -35.42460 -34.43519 -31.89965 -30.44293 -28.21964 -27.15915 -26.81323 -23.74696 -22.90919 -21.44524 -21.13988 -20.14603 -19.65592 -18.74601 -17.92737 -17.31414 -16.96967 -16.84922 -16.28249 -15.94870 -15.75222 -15.55746 -15.20532 -15.09166 -14.90587 -14.61139 -14.13040 -13.57405 -13.41094 -13.34944 -13.18318 -12.84398 -12.39493 -12.08703 -11.95135 -11.79713 -11.73183 -11.33016 -11.09644 -11.01753 -10.67196 -10.63111 -10.36929 -10.01805 -9.21511 -8.67031 -5.47464 -1.14871 -0.48991 0.29811 0.85616 1.03541 1.35952 1.47539 1.66695 1.87965 1.93413 2.53511 2.84500 2.88187 2.95978 3.17390 3.32185 3.69490 3.72637 3.95779 4.25194 4.48557 4.58090 4.64807 4.69335 4.78018 4.78787 5.02122 5.06058 5.18972 5.93269 6.00510 6.26367 6.67576 6.68831 6.84258 7.30806 8.23695 8.88969 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023668 B = 0.002964 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.740916 B = 9444.152787 C =10162.473142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.089 4.089 3 Si 1.111 2.889 4 H -0.255 1.255 5 H -0.305 1.305 6 H -0.274 1.274 7 C -0.288 4.288 8 H 0.048 0.952 9 N -0.655 5.655 10 C 0.066 3.934 11 C 0.103 3.897 12 O -0.536 6.536 13 C 0.118 3.882 14 N -0.694 5.694 15 C 0.603 3.397 16 O -0.549 6.549 17 C -0.041 4.041 18 N -0.419 5.419 19 C 0.043 3.957 20 C -0.215 4.215 21 Cl 0.029 6.971 22 S 0.332 5.668 23 C 0.132 3.868 24 H 0.245 0.755 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.385 0.615 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.415 0.585 31 H 0.209 0.791 32 H 0.050 0.950 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.858 6.156 2.979 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.280 4.280 3 Si 0.937 3.063 4 H -0.180 1.180 5 H -0.234 1.234 6 H -0.201 1.201 7 C -0.415 4.415 8 H 0.066 0.934 9 N -0.383 5.383 10 C -0.059 4.059 11 C 0.059 3.941 12 O -0.343 6.343 13 C -0.007 4.007 14 N -0.347 5.347 15 C 0.386 3.614 16 O -0.427 6.427 17 C -0.314 4.314 18 N -0.138 5.138 19 C -0.117 4.117 20 C -0.365 4.365 21 Cl 0.057 6.943 22 S 0.586 5.414 23 C 0.006 3.994 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.235 0.765 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.253 0.747 31 H 0.226 0.774 32 H 0.069 0.931 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 31.529 6.458 1.614 32.224 hybrid contribution -0.536 -0.588 1.484 1.684 sum 30.992 5.869 3.099 31.695 Atomic orbital electron populations 1.71029 1.06679 1.28531 1.55481 1.27137 0.96518 1.04725 0.99603 0.83235 0.73345 0.71611 0.78086 1.17978 1.23374 1.20087 1.19962 0.80885 0.94514 1.46165 0.93365 1.45770 1.01422 1.05050 1.86073 1.23799 0.87905 0.94403 0.99762 1.22789 0.91645 0.97741 0.81878 1.86638 1.66647 1.63565 1.17483 1.21912 0.87458 0.93951 0.97376 1.45587 1.11168 1.42339 1.35650 1.16679 0.81492 0.80802 0.82435 1.90883 1.74371 1.48707 1.28713 1.27404 0.98396 1.04746 1.00873 1.66946 1.33294 1.05072 1.08473 1.22170 0.86403 1.00109 1.03014 1.26909 0.97019 1.06528 1.06092 1.98418 1.35779 1.67974 1.92139 1.84204 1.06571 1.27228 1.23389 1.22643 0.84772 0.93115 0.98885 0.94563 0.90963 0.93146 0.76515 0.88477 0.88505 0.74696 0.77424 0.93121 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.14 13.70 21.65 0.30 -63.84 16 2 C -0.09 -5.42 5.50 84.86 0.47 -4.95 16 3 Si 1.11 53.85 25.13 68.60 1.72 55.57 16 4 H -0.25 -10.83 6.13 99.48 0.61 -10.22 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.27 -12.25 6.65 99.48 0.66 -11.59 16 7 C -0.29 -17.17 11.08 84.04 0.93 -16.24 16 8 H 0.05 3.12 8.05 -2.91 -0.02 3.10 16 9 N -0.65 -31.70 3.70 -738.36 -2.73 -34.43 16 10 C 0.07 2.52 5.15 83.27 0.43 2.95 16 11 C 0.10 3.10 1.74 -10.37 -0.02 3.08 16 12 O -0.54 -16.60 13.56 -148.98 -2.02 -18.62 16 13 C 0.12 2.65 5.42 86.38 0.47 3.11 16 14 N -0.69 -14.11 5.34 -466.62 -2.49 -16.60 16 15 C 0.60 13.24 7.80 86.58 0.68 13.91 16 16 O -0.55 -14.65 16.94 -4.16 -0.07 -14.72 16 17 C -0.04 -0.76 7.45 87.22 0.65 -0.11 16 18 N -0.42 -7.26 10.24 -190.29 -1.95 -9.20 16 19 C 0.04 0.57 11.21 84.00 0.94 1.51 16 20 C -0.22 -2.69 6.95 66.95 0.47 -2.23 16 21 Cl 0.03 0.29 29.30 -2.72 -0.08 0.21 16 22 S 0.33 4.63 23.03 -56.49 -1.30 3.33 16 23 C 0.13 4.84 8.10 83.18 0.67 5.51 16 24 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 25 H 0.07 2.54 7.51 -2.39 -0.02 2.52 16 26 H 0.05 2.00 4.65 -2.39 -0.01 1.98 16 27 H 0.38 8.25 7.21 -74.06 -0.53 7.72 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.10 2.12 7.89 -2.39 -0.02 2.10 16 30 H 0.42 7.44 6.60 -92.71 -0.61 6.83 16 31 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 2.69 8.10 -2.39 -0.02 2.67 16 Total: -1.00 -76.96 314.30 -3.06 -80.03 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.13 Total: 11.72 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.68 Total: 6.55 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -6.87 Total: -124.07 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -2.09 Total: -33.34 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.72 Total: 55.57 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.30 Total: 3.33 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -0.08 Total: 0.21 kcal Total: -76.96 -3.06 -80.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754770747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.592 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds