Wall clock time and date at job start Tue Mar 31 2020 10:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47280 * 2 1 4 4 C 1.50701 * 109.47211 * 240.00031 * 2 1 3 5 5 H 1.08001 * 120.00479 * 239.99882 * 4 2 1 6 6 C 1.37881 * 119.99713 * 60.00396 * 4 2 1 7 7 N 1.31512 * 119.99967 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99867 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47226 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47110 * 119.99641 * 8 6 4 11 11 H 1.48499 * 109.47212 * 239.99595 * 8 6 4 12 12 N 1.46496 * 109.46852 * 120.00220 * 2 1 3 13 13 S 1.65607 * 120.00106 * 264.99838 * 12 2 1 14 14 O 1.42102 * 106.39934 * 311.46443 * 13 12 2 15 15 O 1.42102 * 106.40097 * 178.54688 * 13 12 2 16 16 C 1.76191 * 107.21730 * 65.00344 * 13 12 2 17 17 C 1.38472 * 119.82509 * 89.99625 * 16 13 12 18 18 C 1.37837 * 120.22697 * 179.74292 * 17 16 13 19 19 C 1.39725 * 119.87150 * 0.26064 * 18 17 16 20 20 C 1.47561 * 120.17036 * 179.97438 * 19 18 17 21 21 O 1.21489 * 119.99494 * 180.02562 * 20 19 18 22 22 O 1.34725 * 120.00415 * 359.97438 * 20 19 18 23 23 C 1.39879 * 119.65204 * 0.02562 * 19 18 17 24 24 F 1.35104 * 120.11158 * 180.02562 * 23 19 18 25 25 C 1.38208 * 119.82432 * 270.25919 * 16 13 12 26 26 H 1.08996 * 109.46986 * 299.99667 * 1 2 3 27 27 H 1.08997 * 109.47096 * 59.99842 * 1 2 3 28 28 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99912 * 180.02562 * 7 6 4 30 30 H 0.97004 * 120.00401 * 85.00925 * 12 2 1 31 31 H 1.08002 * 119.88956 * 0.03031 * 17 16 13 32 32 H 1.07995 * 120.06469 * 180.27921 * 18 17 16 33 33 H 0.96695 * 116.99741 * 179.97438 * 22 20 19 34 34 H 1.08002 * 119.94130 * 359.97429 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6994 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6033 8 14 2.3226 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6039 10 1 1.1679 -1.5864 -4.8166 11 1 3.1473 -0.1855 -4.8161 12 7 2.0183 -0.6906 1.1961 13 16 2.4122 0.1771 2.5506 14 8 3.2436 1.2442 2.1156 15 8 2.8125 -0.7699 3.5315 16 6 0.9275 0.9146 3.1475 17 6 0.1399 0.2347 4.0612 18 6 -1.0204 0.8061 4.5377 19 6 -1.4058 2.0734 4.0928 20 6 -2.6470 2.6910 4.5981 21 8 -2.9793 3.7928 4.2088 22 8 -3.4123 2.0327 5.4903 23 6 -0.6093 2.7529 3.1652 24 9 -0.9729 3.9789 2.7291 25 6 0.5525 2.1662 2.6971 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7083 1.1610 -3.4843 30 1 2.1111 -1.6562 1.1948 31 1 0.4382 -0.7446 4.4053 32 1 -1.6304 0.2755 5.2537 33 1 -4.2157 2.4779 5.7925 34 1 1.1698 2.6889 1.9814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311577458.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:58 Heat of formation + Delta-G solvation = -181.002904 kcal Electronic energy + Delta-G solvation = -24603.841789 eV Core-core repulsion = 20543.557557 eV Total energy + Delta-G solvation = -4060.284232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.03664 -40.57447 -38.83272 -36.93882 -36.38897 -35.59245 -35.51927 -32.30297 -32.06288 -30.89794 -28.44483 -25.54047 -25.25953 -23.30467 -21.84550 -21.08723 -19.41842 -18.52126 -18.22341 -17.60959 -17.29363 -16.62370 -16.28214 -16.15320 -15.91656 -15.38121 -15.30810 -14.75504 -14.61695 -14.05634 -13.70472 -13.42207 -12.90768 -12.82672 -12.79384 -12.31216 -12.06695 -11.90974 -11.87423 -11.75058 -11.63067 -11.28489 -11.15095 -11.05907 -10.75968 -10.63805 -10.43552 -10.18413 -9.76940 -9.31668 -9.07581 -8.74543 -8.41952 -6.20014 -4.27752 -0.10232 0.74592 0.88049 2.04708 2.55119 3.09835 3.21900 3.30527 3.33423 3.52547 3.82667 4.04773 4.22785 4.30889 4.53940 4.77594 4.89035 5.00459 5.13375 5.19960 5.55584 5.64272 5.68855 5.80816 6.09503 6.17603 6.40940 6.63568 6.67895 6.87548 7.44512 7.51886 7.56040 7.72703 7.90413 8.15358 8.74988 9.38926 10.86222 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.004430 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.291023 B = 6318.755728 C = 7263.558207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.265 3.735 3 H 0.053 0.947 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -1.092 6.092 13 S 2.686 3.314 14 O -0.950 6.950 15 O -0.971 6.971 16 C -0.608 4.608 17 C -0.048 4.048 18 C -0.057 4.057 19 C -0.124 4.124 20 C 0.525 3.475 21 O -0.494 6.494 22 O -0.508 6.508 23 C 0.148 3.852 24 F -0.109 7.109 25 C -0.057 4.057 26 H 0.010 0.990 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.413 0.587 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.417 0.583 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 -0.501 14.291 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.562 4.562 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.855 5.855 13 S 2.771 3.229 14 O -0.940 6.940 15 O -0.961 6.961 16 C -0.690 4.690 17 C -0.067 4.067 18 C -0.076 4.076 19 C -0.127 4.127 20 C 0.368 3.632 21 O -0.382 6.382 22 O -0.321 6.321 23 C 0.127 3.873 24 F -0.087 7.087 25 C -0.077 4.077 26 H 0.029 0.971 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.277 0.723 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.414 0.107 14.278 15.271 hybrid contribution -1.253 -0.065 -0.790 1.483 sum -6.668 0.042 13.488 15.046 Atomic orbital electron populations 1.22335 0.98516 1.00225 1.00970 1.18709 0.90790 0.93237 0.81148 0.92952 1.21215 1.32083 1.13283 0.89593 0.91502 1.24919 0.94792 0.94988 0.99159 1.69858 1.36078 1.22569 1.24029 0.86369 0.78615 0.79604 0.82390 1.19629 1.20945 1.20806 1.55531 1.83578 1.19336 1.27028 1.02260 0.73703 0.73883 0.73080 1.93608 1.62402 1.56649 1.81299 1.93550 1.80760 1.61471 1.60316 1.31703 1.24338 1.04895 1.08113 1.20972 0.92503 0.99906 0.93294 1.21449 0.95993 0.92345 0.97763 1.19323 0.94623 0.97320 1.01396 1.20533 0.83260 0.82962 0.76403 1.90982 1.71214 1.20022 1.55947 1.84526 1.38732 1.51777 1.57043 1.17653 0.93785 0.81526 0.94343 1.91631 1.91017 1.38746 1.87338 1.20989 0.94551 0.94014 0.98122 0.97097 0.88582 0.94431 0.92499 0.75271 0.82658 0.82719 0.72344 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 9.29 37.16 0.35 -3.07 16 2 C 0.27 5.92 2.90 -69.08 -0.20 5.72 16 3 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 4 C -0.52 -13.06 8.76 -34.44 -0.30 -13.36 16 5 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.56 11.32 55.43 0.63 -22.93 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -1.09 -19.86 5.46 -5.88 -0.03 -19.90 16 13 S 2.69 45.31 5.71 -107.50 -0.61 44.70 16 14 O -0.95 -19.04 16.61 -57.17 -0.95 -19.99 16 15 O -0.97 -16.72 17.26 -57.17 -0.99 -17.71 16 16 C -0.61 -8.96 5.08 -39.51 -0.20 -9.16 16 17 C -0.05 -0.57 9.50 -39.64 -0.38 -0.95 16 18 C -0.06 -0.61 9.62 -39.17 -0.38 -0.99 16 19 C -0.12 -1.62 5.88 -104.93 -0.62 -2.24 16 20 C 0.53 6.46 8.27 34.53 0.29 6.75 16 21 O -0.49 -7.62 16.13 -19.26 -0.31 -7.93 16 22 O -0.51 -4.11 12.68 -40.56 -0.51 -4.62 16 23 C 0.15 2.24 7.29 -38.94 -0.28 1.95 16 24 F -0.11 -1.81 15.55 2.25 0.04 -1.78 16 25 C -0.06 -0.88 8.52 -39.56 -0.34 -1.22 16 26 H 0.01 0.19 6.15 -51.93 -0.32 -0.13 16 27 H 0.10 2.30 6.07 -51.93 -0.32 1.99 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.41 6.67 8.83 -34.47 -0.30 6.37 16 31 H 0.16 1.52 7.60 -52.49 -0.40 1.12 16 32 H 0.16 1.19 7.61 -52.49 -0.40 0.79 16 33 H 0.42 1.44 9.11 45.56 0.42 1.85 16 34 H 0.17 2.57 7.60 -52.49 -0.40 2.17 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -32.47 316.71 -7.23 -39.70 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -2.08 Total: 5.66 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -2.16 Total: -15.00 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.60 Total: -42.83 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -2.76 Total: -50.25 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 45.31 SS G_CDS: -0.61 Total: 44.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.47 -7.23 -39.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311577458.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.307 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds