Wall clock time and date at job start Tue Mar 31 2020 10:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47280 * 2 1 4 4 C 1.50701 * 109.47211 * 240.00031 * 2 1 3 5 5 H 1.08001 * 120.00479 * 239.99882 * 4 2 1 6 6 C 1.37881 * 119.99713 * 60.00396 * 4 2 1 7 7 N 1.31512 * 119.99967 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99867 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47226 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47110 * 119.99641 * 8 6 4 11 11 H 1.48499 * 109.47212 * 239.99595 * 8 6 4 12 12 N 1.46496 * 109.46852 * 120.00220 * 2 1 3 13 13 S 1.65607 * 120.00106 * 264.99838 * 12 2 1 14 14 O 1.42102 * 106.39934 * 311.46443 * 13 12 2 15 15 O 1.42102 * 106.40097 * 178.54688 * 13 12 2 16 16 C 1.76191 * 107.21730 * 65.00344 * 13 12 2 17 17 C 1.38472 * 119.82509 * 89.99625 * 16 13 12 18 18 C 1.37837 * 120.22697 * 179.74292 * 17 16 13 19 19 C 1.39725 * 119.87150 * 0.26064 * 18 17 16 20 20 C 1.47561 * 120.17036 * 179.97438 * 19 18 17 21 21 O 1.21489 * 119.99494 * 180.02562 * 20 19 18 22 22 O 1.34725 * 120.00415 * 359.97438 * 20 19 18 23 23 C 1.39879 * 119.65204 * 0.02562 * 19 18 17 24 24 F 1.35104 * 120.11158 * 180.02562 * 23 19 18 25 25 C 1.38208 * 119.82432 * 270.25919 * 16 13 12 26 26 H 1.08996 * 109.46986 * 299.99667 * 1 2 3 27 27 H 1.08997 * 109.47096 * 59.99842 * 1 2 3 28 28 H 1.09000 * 109.46587 * 179.97438 * 1 2 3 29 29 H 0.97003 * 119.99912 * 180.02562 * 7 6 4 30 30 H 0.97004 * 120.00401 * 85.00925 * 12 2 1 31 31 H 1.08002 * 119.88956 * 0.03031 * 17 16 13 32 32 H 1.07995 * 120.06469 * 180.27921 * 18 17 16 33 33 H 0.96695 * 116.99741 * 179.97438 * 22 20 19 34 34 H 1.08002 * 119.94130 * 359.97429 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6994 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6033 8 14 2.3226 -1.1194 -4.0080 9 1 3.1475 -2.2862 -3.6039 10 1 1.1679 -1.5864 -4.8166 11 1 3.1473 -0.1855 -4.8161 12 7 2.0183 -0.6906 1.1961 13 16 2.4122 0.1771 2.5506 14 8 3.2436 1.2442 2.1156 15 8 2.8125 -0.7699 3.5315 16 6 0.9275 0.9146 3.1475 17 6 0.1399 0.2347 4.0612 18 6 -1.0204 0.8061 4.5377 19 6 -1.4058 2.0734 4.0928 20 6 -2.6470 2.6910 4.5981 21 8 -2.9793 3.7928 4.2088 22 8 -3.4123 2.0327 5.4903 23 6 -0.6093 2.7529 3.1652 24 9 -0.9729 3.9789 2.7291 25 6 0.5525 2.1662 2.6971 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7083 1.1610 -3.4843 30 1 2.1111 -1.6562 1.1948 31 1 0.4382 -0.7446 4.4053 32 1 -1.6304 0.2755 5.2537 33 1 -4.2157 2.4779 5.7925 34 1 1.1698 2.6889 1.9814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311577458.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:57 Heat of formation + Delta-G solvation = -206.005865 kcal Electronic energy + Delta-G solvation = -24604.925999 eV Core-core repulsion = 20543.557557 eV Total energy + Delta-G solvation = -4061.368442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.22528 -41.51194 -39.86143 -38.38578 -37.28132 -37.23024 -36.97675 -34.13336 -33.13966 -31.95232 -30.14277 -27.25535 -26.49304 -24.34667 -22.84746 -22.80915 -20.74614 -19.53508 -19.43607 -19.05448 -18.39356 -17.82978 -17.74672 -17.27276 -17.15087 -16.99488 -16.44065 -16.27061 -15.72153 -15.33664 -14.99877 -14.54801 -14.47799 -14.06889 -13.99532 -13.90424 -13.52050 -13.29853 -13.20559 -13.01635 -12.94916 -12.83083 -12.72764 -12.43574 -12.27976 -12.21495 -11.98901 -11.78174 -11.13953 -10.84056 -10.59963 -10.15001 -10.12096 -8.13717 -6.27294 -1.17913 -0.61298 -0.17272 1.05787 1.45574 1.48977 1.58938 1.69874 1.98390 2.22325 2.45903 2.70622 2.73891 3.16243 3.17775 3.49333 3.74743 3.84844 3.89280 4.20545 4.49685 4.54399 4.66963 4.70455 4.79209 4.90750 4.99053 5.13348 5.37324 5.38724 5.59826 5.76449 6.05445 6.11376 6.42428 6.78334 6.83786 7.42625 8.91640 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.004430 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.291023 B = 6318.755728 C = 7263.558207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.270 3.730 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.286 1.286 12 N -1.092 6.092 13 S 2.705 3.295 14 O -0.989 6.989 15 O -0.970 6.970 16 C -0.615 4.615 17 C -0.038 4.038 18 C -0.033 4.033 19 C -0.125 4.125 20 C 0.534 3.466 21 O -0.532 6.532 22 O -0.488 6.488 23 C 0.124 3.876 24 F -0.126 7.126 25 C -0.074 4.074 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.422 0.578 31 H 0.187 0.813 32 H 0.200 0.800 33 H 0.440 0.560 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 -2.552 16.222 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.164 3.836 3 H 0.042 0.958 4 C -0.578 4.578 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.212 1.212 12 N -0.854 5.854 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.960 6.960 16 C -0.702 4.702 17 C -0.057 4.057 18 C -0.051 4.051 19 C -0.127 4.127 20 C 0.378 3.622 21 O -0.423 6.423 22 O -0.302 6.302 23 C 0.104 3.896 24 F -0.104 7.104 25 C -0.094 4.094 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.258 0.742 31 H 0.204 0.796 32 H 0.217 0.783 33 H 0.304 0.696 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.588 -1.995 16.225 17.625 hybrid contribution -0.951 0.548 -1.219 1.641 sum -7.540 -1.447 15.006 16.856 Atomic orbital electron populations 1.22145 0.97568 1.00577 1.00661 1.18372 0.91423 0.91869 0.81887 0.95795 1.21623 1.31889 1.13416 0.90834 0.91225 1.25662 0.95101 0.95660 1.01873 1.69988 1.37161 1.23794 1.24440 0.85468 0.78095 0.78638 0.79174 1.18811 1.20564 1.21188 1.55284 1.83683 1.19854 1.26625 1.01383 0.73767 0.73012 0.72438 1.93560 1.64634 1.57796 1.81917 1.93544 1.81221 1.61521 1.59727 1.31249 1.24022 1.04951 1.09938 1.21440 0.92006 1.00677 0.91533 1.21916 0.95327 0.90968 0.96922 1.19574 0.94702 0.97961 1.00482 1.20364 0.83123 0.82294 0.76390 1.90981 1.72098 1.21750 1.57487 1.84462 1.39419 1.51004 1.55313 1.17834 0.94488 0.81489 0.95815 1.91582 1.91202 1.39840 1.87815 1.20875 0.95076 0.94667 0.98751 0.94825 0.91497 0.93542 0.92628 0.74158 0.79568 0.78296 0.69638 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.38 9.29 71.98 0.67 -5.71 16 2 C 0.27 12.23 2.90 44.25 0.13 12.36 16 3 H 0.02 1.23 7.50 -2.39 -0.02 1.21 16 4 C -0.54 -27.08 8.76 25.60 0.22 -26.86 16 5 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.91 -49.70 11.32 21.45 0.24 -49.46 16 8 Si 0.96 41.23 29.54 68.60 2.03 43.26 16 9 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 N -1.09 -39.25 5.46 -172.53 -0.94 -40.19 16 13 S 2.71 89.95 5.71 -56.49 -0.32 89.63 16 14 O -0.99 -40.81 16.61 -128.00 -2.13 -42.94 16 15 O -0.97 -31.57 17.26 -128.00 -2.21 -33.78 16 16 C -0.62 -17.38 5.08 22.32 0.11 -17.27 16 17 C -0.04 -0.77 9.50 22.23 0.21 -0.55 16 18 C -0.03 -0.57 9.62 22.53 0.22 -0.35 16 19 C -0.12 -2.97 5.88 -20.06 -0.12 -3.09 16 20 C 0.53 11.83 8.27 70.28 0.58 12.41 16 21 O -0.53 -15.94 16.13 19.87 0.32 -15.62 16 22 O -0.49 -5.82 12.68 -56.35 -0.71 -6.53 16 23 C 0.12 3.76 7.29 22.69 0.17 3.93 16 24 F -0.13 -4.35 15.55 44.97 0.70 -3.65 16 25 C -0.07 -2.31 8.52 22.28 0.19 -2.12 16 26 H 0.03 1.23 6.15 -2.39 -0.01 1.21 16 27 H 0.07 3.27 6.07 -2.39 -0.01 3.26 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.42 13.19 8.83 -96.74 -0.85 12.34 16 31 H 0.19 2.67 7.60 -2.91 -0.02 2.65 16 32 H 0.20 1.72 7.61 -2.91 -0.02 1.70 16 33 H 0.44 1.23 9.11 -74.06 -0.67 0.56 16 34 H 0.15 5.05 7.60 -2.91 -0.02 5.03 16 Total: -1.00 -71.47 316.71 -0.53 -72.00 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.33 Total: 13.20 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 2.83 Total: -25.92 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -0.70 Total: -89.65 kcal Atomic # 8 Polarization: -94.13 SS G_CDS: -4.73 Total: -98.86 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.70 Total: -3.65 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 89.95 SS G_CDS: -0.32 Total: 89.63 kcal Total: -71.47 -0.53 -72.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311577458.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.003 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds