Wall clock time and date at job start Tue Mar 31 2020 11:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34821 * 116.99665 * 2 1 4 4 O 1.21552 * 120.00040 * 0.27529 * 3 2 1 5 5 C 1.47006 * 119.99609 * 179.97438 * 3 2 1 6 6 C 1.38481 * 126.88950 * 180.02562 * 5 3 2 7 7 C 1.39642 * 105.35393 * 180.02562 * 6 5 3 8 8 S 1.76204 * 126.05980 * 180.02562 * 7 6 5 9 9 O 1.42105 * 106.39783 * 263.53618 * 8 7 6 10 10 O 1.42094 * 106.40346 * 36.45172 * 8 7 6 11 11 N 1.65599 * 107.21978 * 149.99478 * 8 7 6 12 12 C 1.46501 * 119.99961 * 64.99373 * 11 8 7 13 13 C 1.52996 * 109.46785 * 165.00015 * 12 11 8 14 14 C 1.53009 * 109.46994 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47171 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99831 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00219 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99863 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47267 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47319 * 120.00071 * 19 17 15 22 22 H 1.48504 * 109.46740 * 240.00290 * 19 17 15 23 23 N 1.30868 * 107.87855 * 359.97438 * 7 6 5 24 24 N 1.28443 * 110.94476 * 359.72378 * 23 7 6 25 25 H 0.97003 * 125.19228 * 180.31512 * 24 23 7 26 26 H 1.08994 * 109.47061 * 299.99730 * 1 2 3 27 27 H 1.09003 * 109.46704 * 60.00166 * 1 2 3 28 28 H 1.09001 * 109.46410 * 179.97438 * 1 2 3 29 29 H 1.08009 * 127.32468 * 359.96356 * 6 5 3 30 30 H 0.96999 * 119.99794 * 245.00077 * 11 8 7 31 31 H 1.08992 * 109.47563 * 285.00449 * 12 11 8 32 32 H 1.09007 * 109.46727 * 45.00709 * 12 11 8 33 33 H 1.09001 * 109.47475 * 299.99892 * 13 12 11 34 34 H 1.08995 * 109.47346 * 60.00754 * 13 12 11 35 35 H 1.09007 * 109.46736 * 299.99763 * 14 13 12 36 36 H 1.08994 * 109.47511 * 59.99740 * 14 13 12 37 37 H 0.96997 * 120.00280 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4020 2.2207 0.0051 5 6 3.5321 1.2782 0.0006 6 6 4.3043 2.4278 0.0011 7 6 5.6283 1.9838 0.0009 8 16 7.0645 3.0047 0.0021 9 8 7.4806 3.1132 -1.3524 10 8 6.7563 4.1301 0.8129 11 7 8.2575 2.1715 0.7925 12 6 8.7806 0.9262 0.2250 13 6 10.0935 0.5609 0.9205 14 6 10.6401 -0.7394 0.3274 15 6 11.9329 -1.0996 1.0128 16 1 12.3257 -0.4645 1.7931 17 6 12.6144 -2.2400 0.6437 18 7 12.1359 -3.0136 -0.3061 19 14 14.2166 -2.6870 1.4939 20 1 14.5357 -1.6614 2.5193 21 1 14.0774 -4.0136 2.1465 22 1 15.3106 -2.7408 0.4912 23 7 5.6133 0.6752 0.0008 24 7 4.4085 0.2299 0.0068 25 1 4.1590 -0.7075 0.0122 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.9565 3.4503 0.0007 30 1 8.6099 2.5079 1.6313 31 1 8.0556 0.1262 0.3740 32 1 8.9597 1.0603 -0.8419 33 1 10.8186 1.3609 0.7713 34 1 9.9145 0.4268 1.9872 35 1 9.9151 -1.5396 0.4762 36 1 10.8192 -0.6051 -0.7394 37 1 12.6151 -3.8161 -0.5654 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309167708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:45 Heat of formation + Delta-G solvation = -95.907749 kcal Electronic energy + Delta-G solvation = -23577.921384 eV Core-core repulsion = 19677.080211 eV Total energy + Delta-G solvation = -3900.841173 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.092 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.20942 -40.72373 -37.23596 -37.10487 -35.96715 -35.89897 -33.24139 -32.61863 -31.86526 -30.84537 -28.39842 -26.37597 -24.59107 -23.57659 -22.97231 -21.63693 -20.55284 -19.86474 -19.07893 -17.73412 -17.58285 -17.19989 -16.84476 -16.54907 -16.12983 -16.07706 -15.58162 -14.55262 -14.52233 -14.38191 -14.35103 -14.23880 -13.82081 -12.81946 -12.58588 -12.34777 -12.22299 -12.11820 -12.08530 -11.96171 -11.62693 -11.50255 -11.45980 -11.25355 -10.94387 -10.71282 -10.52596 -10.44711 -9.91840 -9.89671 -9.44375 -9.23721 -9.06921 -8.36612 -6.01665 -4.03868 0.32482 0.39565 1.40365 1.79332 2.25515 2.28492 2.91965 3.30435 3.38221 3.42137 3.51806 4.01115 4.07063 4.44995 4.52851 4.63709 4.63955 4.66435 4.81880 4.98501 5.34607 5.39474 5.50610 5.58799 5.76941 5.96252 6.14826 6.22422 6.62363 6.80888 6.92099 6.98250 7.09908 7.17061 7.65322 7.78345 7.98026 8.39896 9.03206 9.60325 11.09677 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.002731 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.528561 B =10249.107745 C =11533.304247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.544 3.456 4 O -0.482 6.482 5 C -0.033 4.033 6 C -0.058 4.058 7 C -0.529 4.529 8 S 2.729 3.271 9 O -0.941 6.941 10 O -0.953 6.953 11 N -1.103 6.103 12 C 0.111 3.889 13 C -0.116 4.116 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 N -0.146 5.146 24 N -0.338 5.338 25 H 0.459 0.541 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.185 0.815 30 H 0.420 0.580 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.926 6.734 1.242 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.276 6.276 3 C 0.386 3.614 4 O -0.367 6.367 5 C -0.158 4.158 6 C -0.087 4.087 7 C -0.763 4.763 8 S 2.809 3.191 9 O -0.930 6.930 10 O -0.942 6.942 11 N -0.866 5.866 12 C -0.014 4.014 13 C -0.155 4.155 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 N 0.014 4.986 24 N -0.061 5.061 25 H 0.306 0.694 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.202 0.798 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.039 0.961 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.570 6.734 0.592 23.561 hybrid contribution -0.355 -0.795 0.929 1.273 sum -22.926 5.939 1.521 23.731 Atomic orbital electron populations 1.23400 0.74472 1.04408 1.03184 1.86534 1.24847 1.31861 1.84399 1.19492 0.86124 0.82281 0.73532 1.90942 1.65025 1.35761 1.44961 1.20637 0.88657 0.89391 1.17094 1.21884 0.89159 0.99408 0.98243 1.35281 1.18709 1.02182 1.20159 1.01337 0.71828 0.71953 0.74004 1.93641 1.79665 1.84913 1.34808 1.93614 1.84513 1.46491 1.69621 1.55327 1.52851 1.39526 1.38899 1.21702 0.97924 0.83221 0.98516 1.21856 0.93289 1.00984 0.99368 1.19080 0.95733 0.90400 0.96464 1.21265 1.06789 1.07865 1.19874 0.92554 1.25024 0.97838 0.96466 0.95180 1.69967 1.39238 1.14502 1.29719 0.86540 0.83689 0.78270 0.79505 1.19751 1.21091 1.21025 1.73397 1.03315 1.11336 1.10582 1.44153 1.02717 1.10425 1.48766 0.69356 0.91279 0.91282 0.87393 0.79754 0.74484 0.91132 0.90457 0.92382 0.92611 0.96286 0.96137 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.57 101.05 1.07 1.25 16 2 O -0.36 -2.66 10.58 -40.82 -0.43 -3.09 16 3 C 0.54 5.23 7.95 34.28 0.27 5.51 16 4 O -0.48 -5.66 16.71 -19.30 -0.32 -5.98 16 5 C -0.03 -0.34 7.21 -82.08 -0.59 -0.93 16 6 C -0.06 -0.65 10.76 -38.97 -0.42 -1.07 16 7 C -0.53 -6.58 7.18 -17.44 -0.13 -6.71 16 8 S 2.73 36.41 5.88 -107.50 -0.63 35.77 16 9 O -0.94 -15.43 17.49 -57.17 -1.00 -16.43 16 10 O -0.95 -13.78 17.98 -57.17 -1.03 -14.81 16 11 N -1.10 -14.46 6.00 -10.61 -0.06 -14.52 16 12 C 0.11 1.76 6.05 -4.04 -0.02 1.74 16 13 C -0.12 -2.19 5.30 -26.73 -0.14 -2.33 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 N -0.15 -1.76 11.08 31.23 0.35 -1.41 16 24 N -0.34 -3.17 6.94 33.46 0.23 -2.94 16 25 H 0.46 2.72 8.96 -190.45 -1.71 1.01 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.19 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.42 4.65 8.65 -34.47 -0.30 4.36 16 31 H 0.07 1.06 7.24 -51.93 -0.38 0.69 16 32 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -36.13 345.04 -8.20 -44.33 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.71 Total: -1.50 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.51 Total: -15.27 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 1.25 Total: -44.50 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.78 Total: -40.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 36.41 SS G_CDS: -0.63 Total: 35.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.13 -8.20 -44.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309167708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.576 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds