Wall clock time and date at job start Tue Mar 31 2020 11:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34821 * 116.99665 * 2 1 4 4 O 1.21552 * 120.00040 * 0.27529 * 3 2 1 5 5 C 1.47006 * 119.99609 * 179.97438 * 3 2 1 6 6 C 1.38481 * 126.88950 * 180.02562 * 5 3 2 7 7 C 1.39642 * 105.35393 * 180.02562 * 6 5 3 8 8 S 1.76204 * 126.05980 * 180.02562 * 7 6 5 9 9 O 1.42105 * 106.39783 * 263.53618 * 8 7 6 10 10 O 1.42094 * 106.40346 * 36.45172 * 8 7 6 11 11 N 1.65599 * 107.21978 * 149.99478 * 8 7 6 12 12 C 1.46501 * 119.99961 * 64.99373 * 11 8 7 13 13 C 1.52996 * 109.46785 * 165.00015 * 12 11 8 14 14 C 1.53009 * 109.46994 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47171 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99924 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99831 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00219 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99863 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47267 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47319 * 120.00071 * 19 17 15 22 22 H 1.48504 * 109.46740 * 240.00290 * 19 17 15 23 23 N 1.30868 * 107.87855 * 359.97438 * 7 6 5 24 24 N 1.28443 * 110.94476 * 359.72378 * 23 7 6 25 25 H 0.97003 * 125.19228 * 180.31512 * 24 23 7 26 26 H 1.08994 * 109.47061 * 299.99730 * 1 2 3 27 27 H 1.09003 * 109.46704 * 60.00166 * 1 2 3 28 28 H 1.09001 * 109.46410 * 179.97438 * 1 2 3 29 29 H 1.08009 * 127.32468 * 359.96356 * 6 5 3 30 30 H 0.96999 * 119.99794 * 245.00077 * 11 8 7 31 31 H 1.08992 * 109.47563 * 285.00449 * 12 11 8 32 32 H 1.09007 * 109.46727 * 45.00709 * 12 11 8 33 33 H 1.09001 * 109.47475 * 299.99892 * 13 12 11 34 34 H 1.08995 * 109.47346 * 60.00754 * 13 12 11 35 35 H 1.09007 * 109.46736 * 299.99763 * 14 13 12 36 36 H 1.08994 * 109.47511 * 59.99740 * 14 13 12 37 37 H 0.96997 * 120.00280 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4020 2.2207 0.0051 5 6 3.5321 1.2782 0.0006 6 6 4.3043 2.4278 0.0011 7 6 5.6283 1.9838 0.0009 8 16 7.0645 3.0047 0.0021 9 8 7.4806 3.1132 -1.3524 10 8 6.7563 4.1301 0.8129 11 7 8.2575 2.1715 0.7925 12 6 8.7806 0.9262 0.2250 13 6 10.0935 0.5609 0.9205 14 6 10.6401 -0.7394 0.3274 15 6 11.9329 -1.0996 1.0128 16 1 12.3257 -0.4645 1.7931 17 6 12.6144 -2.2400 0.6437 18 7 12.1359 -3.0136 -0.3061 19 14 14.2166 -2.6870 1.4939 20 1 14.5357 -1.6614 2.5193 21 1 14.0774 -4.0136 2.1465 22 1 15.3106 -2.7408 0.4912 23 7 5.6133 0.6752 0.0008 24 7 4.4085 0.2299 0.0068 25 1 4.1590 -0.7075 0.0122 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.9565 3.4503 0.0007 30 1 8.6099 2.5079 1.6313 31 1 8.0556 0.1262 0.3740 32 1 8.9597 1.0603 -0.8419 33 1 10.8186 1.3609 0.7713 34 1 9.9145 0.4268 1.9872 35 1 9.9151 -1.5396 0.4762 36 1 10.8192 -0.6051 -0.7394 37 1 12.6151 -3.8161 -0.5654 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309167708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:43 Heat of formation + Delta-G solvation = -124.617383 kcal Electronic energy + Delta-G solvation = -23579.166327 eV Core-core repulsion = 19677.080211 eV Total energy + Delta-G solvation = -3902.086116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.092 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.06252 -41.42680 -38.40291 -37.79750 -37.35061 -37.08167 -35.14465 -33.48315 -32.77278 -32.53148 -28.87807 -28.17268 -25.34691 -24.74453 -24.47405 -22.43745 -22.15481 -20.69910 -20.13692 -18.72668 -18.51817 -18.31645 -17.94718 -17.81720 -17.25908 -16.92292 -16.64288 -16.42128 -15.93904 -15.63894 -15.17722 -14.92960 -14.43238 -14.28955 -14.02687 -13.71743 -13.36954 -13.31139 -13.24569 -13.19330 -13.01310 -12.78574 -12.57038 -12.47135 -12.23612 -12.04850 -11.99849 -11.65123 -11.36748 -11.31049 -11.08836 -10.74754 -10.50634 -10.42513 -8.15226 -6.24772 -0.75757 -0.40460 0.46955 1.09471 1.43239 1.44473 1.48328 1.56441 1.57273 1.89180 2.45118 2.47678 3.10699 3.18826 3.33272 3.62261 3.86277 3.95897 4.12133 4.21269 4.29600 4.37647 4.54592 4.66305 4.69600 4.78603 4.96897 5.07615 5.26787 5.30785 5.48040 5.60377 5.82874 5.92707 6.11241 6.15716 6.30883 6.32684 6.92958 7.44035 8.96704 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.002731 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.528561 B =10249.107745 C =11533.304247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.551 3.449 4 O -0.505 6.505 5 C -0.028 4.028 6 C -0.070 4.070 7 C -0.542 4.542 8 S 2.755 3.245 9 O -0.974 6.974 10 O -0.963 6.963 11 N -1.097 6.097 12 C 0.121 3.879 13 C -0.104 4.104 14 C 0.021 3.979 15 C -0.538 4.538 16 H 0.062 0.938 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.962 3.038 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.282 1.282 23 N -0.162 5.162 24 N -0.319 5.319 25 H 0.473 0.527 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.199 0.801 30 H 0.430 0.570 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.001 0.999 36 H -0.005 1.005 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.623 6.568 2.345 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.393 3.607 4 O -0.392 6.392 5 C -0.154 4.154 6 C -0.099 4.099 7 C -0.777 4.777 8 S 2.837 3.163 9 O -0.963 6.963 10 O -0.952 6.952 11 N -0.861 5.861 12 C -0.005 4.005 13 C -0.144 4.144 14 C -0.017 4.017 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.787 3.213 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.208 1.208 23 N -0.004 5.004 24 N -0.045 5.045 25 H 0.324 0.676 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.216 0.784 30 H 0.268 0.732 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.020 0.980 36 H 0.013 0.987 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.251 6.574 1.716 24.224 hybrid contribution -0.277 -0.806 0.575 1.028 sum -23.529 5.768 2.291 24.334 Atomic orbital electron populations 1.23745 0.72679 1.06507 1.03359 1.86537 1.26513 1.30401 1.83698 1.19371 0.85750 0.82590 0.72945 1.90936 1.65394 1.36684 1.46207 1.20718 0.89150 0.89205 1.16320 1.22176 0.88784 1.00611 0.98300 1.34908 1.18678 1.02417 1.21709 1.00309 0.71571 0.71547 0.72898 1.93602 1.80523 1.85560 1.36613 1.93597 1.84706 1.47217 1.69673 1.55078 1.53177 1.38529 1.39287 1.21415 0.96768 0.84500 0.97776 1.21629 0.94666 0.98114 0.99950 1.18996 0.94827 0.92736 0.95123 1.21741 1.07869 1.08012 1.20011 0.91979 1.25938 1.01536 0.96547 0.95889 1.70093 1.40914 1.15083 1.31248 0.85449 0.79141 0.78209 0.78528 1.18583 1.20530 1.20755 1.73347 1.04460 1.11223 1.11360 1.44186 1.01912 1.11182 1.47189 0.67626 0.91122 0.91170 0.84363 0.78382 0.73205 0.90257 0.91292 0.92075 0.91307 0.98048 0.98663 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.57 113.37 1.20 1.41 16 2 O -0.36 -4.56 10.58 -57.33 -0.61 -5.17 16 3 C 0.55 9.82 7.95 70.12 0.56 10.37 16 4 O -0.51 -11.32 16.71 19.67 0.33 -10.99 16 5 C -0.03 -0.54 7.21 40.75 0.29 -0.24 16 6 C -0.07 -1.50 10.76 22.67 0.24 -1.26 16 7 C -0.54 -13.03 7.18 85.18 0.61 -12.41 16 8 S 2.75 71.89 5.88 -56.49 -0.33 71.56 16 9 O -0.97 -31.87 17.49 -128.00 -2.24 -34.11 16 10 O -0.96 -26.96 17.98 -128.00 -2.30 -29.26 16 11 N -1.10 -27.68 6.00 -187.49 -1.12 -28.80 16 12 C 0.12 3.77 6.05 86.38 0.52 4.30 16 13 C -0.10 -3.89 5.30 30.60 0.16 -3.73 16 14 C 0.02 1.06 4.97 29.85 0.15 1.21 16 15 C -0.54 -29.58 9.11 25.60 0.23 -29.35 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 18 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 19 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 N -0.16 -3.74 11.08 -55.10 -0.61 -4.35 16 24 N -0.32 -5.53 6.94 -48.04 -0.33 -5.86 16 25 H 0.47 4.79 8.96 -220.00 -1.97 2.82 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.43 8.91 8.65 -96.75 -0.84 8.08 16 31 H 0.08 2.34 7.24 -2.39 -0.02 2.32 16 32 H 0.07 2.28 7.75 -2.38 -0.02 2.26 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 36 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -76.54 345.04 -2.15 -78.69 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -1.68 Total: 7.49 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.43 Total: -29.33 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -1.78 Total: -94.39 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -4.82 Total: -79.53 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 71.89 SS G_CDS: -0.33 Total: 71.56 kcal Total: -76.54 -2.15 -78.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309167708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.930 kcal (2) G-P(sol) polarization free energy of solvation -76.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds