Wall clock time and date at job start Tue Mar 31 2020 12:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86797 * 120.00441 * 2 1 4 4 H 1.48507 * 109.47149 * 274.65950 * 3 2 1 5 5 H 1.48500 * 109.47139 * 34.65817 * 3 2 1 6 6 H 1.48505 * 109.47491 * 154.66221 * 3 2 1 7 7 C 1.40037 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00002 * 196.76377 * 7 2 1 9 9 C 1.41548 * 119.99913 * 16.76823 * 7 2 1 10 10 C 1.41176 * 120.98996 * 203.67095 * 9 7 2 11 11 C 1.37587 * 119.01344 * 179.97438 * 10 9 7 12 12 N 1.32091 * 121.11468 * 359.97438 * 11 10 9 13 13 C 1.32481 * 122.22584 * 0.02562 * 12 11 10 14 14 N 1.39387 * 119.58053 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99660 * 5.18280 * 14 13 12 16 16 O 1.21595 * 120.00172 * 355.12944 * 15 14 13 17 17 C 1.47493 * 119.99536 * 175.13625 * 15 14 13 18 18 C 1.36616 * 125.77181 * 180.25291 * 17 15 14 19 19 N 1.34817 * 106.83732 * 180.14232 * 18 17 15 20 20 C 1.46492 * 126.59292 * 179.88578 * 19 18 17 21 21 C 1.50697 * 109.47421 * 124.71235 * 20 19 18 22 22 O 1.20826 * 119.99789 * 359.97438 * 21 20 19 23 23 O 1.34226 * 120.00514 * 179.72085 * 21 20 19 24 24 N 1.40211 * 106.81153 * 359.62339 * 19 18 17 25 25 N 1.28761 * 108.37005 * 0.23898 * 24 19 18 26 26 C 1.38621 * 120.83826 * 0.27066 * 13 12 11 27 27 H 0.97000 * 119.99552 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.49630 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.44384 * 179.97438 * 11 10 9 30 30 H 0.97000 * 119.99915 * 185.17901 * 14 13 12 31 31 H 1.08004 * 126.58169 * 0.02562 * 18 17 15 32 32 H 1.09005 * 109.47293 * 4.71264 * 20 19 18 33 33 H 1.09003 * 109.47138 * 244.71411 * 20 19 18 34 34 H 0.96700 * 117.00334 * 180.27715 * 23 21 20 35 35 H 1.07997 * 120.60673 * 179.70495 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.3906 2.1032 -1.3955 5 1 1.4917 2.6222 0.7962 6 1 3.5849 1.4136 0.5992 7 6 2.0075 -1.2128 0.0005 8 1 3.0531 -1.2326 0.2703 9 6 1.3448 -2.4127 -0.3526 10 6 1.8226 -3.6647 0.0915 11 6 1.1465 -4.8054 -0.2756 12 7 0.0649 -4.7443 -1.0315 13 6 -0.4239 -3.5952 -1.4739 14 7 -1.5694 -3.5949 -2.2680 15 6 -2.2323 -4.7463 -2.4950 16 8 -1.7833 -5.7980 -2.0817 17 6 -3.5023 -4.7305 -3.2448 18 6 -4.2709 -5.8216 -3.5369 19 7 -5.3353 -5.3743 -4.2330 20 6 -6.4339 -6.1844 -4.7648 21 6 -7.7463 -5.6495 -4.2524 22 8 -7.7622 -4.6902 -3.5179 23 8 -8.8979 -6.2354 -4.6160 24 7 -5.1917 -3.9841 -4.3447 25 7 -4.1019 -3.6397 -3.7518 26 6 0.1924 -2.3935 -1.1613 27 1 -0.4849 0.8401 0.0004 28 1 2.7052 -3.7263 0.7108 29 1 1.5061 -5.7669 0.0598 30 1 -1.8896 -2.7661 -2.6572 31 1 -4.0643 -6.8460 -3.2643 32 1 -6.3122 -7.2184 -4.4421 33 1 -6.4239 -6.1401 -5.8539 34 1 -9.7144 -5.8542 -4.2652 35 1 -0.2066 -1.4593 -1.5279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:28 Heat of formation + Delta-G solvation = 23.695489 kcal Electronic energy + Delta-G solvation = -24656.968968 eV Core-core repulsion = 20658.162980 eV Total energy + Delta-G solvation = -3998.805988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 317.096 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36806 -40.69626 -39.37092 -37.64820 -36.78570 -34.97702 -34.31609 -33.67982 -31.13330 -30.50762 -29.58649 -28.31546 -25.96850 -23.93187 -23.69279 -21.94520 -21.74483 -21.28727 -19.79876 -18.80069 -18.15739 -17.61426 -17.35807 -16.71366 -16.24857 -15.69290 -15.63534 -15.21879 -14.73135 -14.35921 -14.21975 -14.15784 -13.80872 -13.67866 -13.47120 -12.81077 -12.58303 -12.25880 -12.24328 -12.09508 -11.48648 -11.41943 -11.28860 -11.19977 -10.87495 -10.61187 -10.27331 -10.13475 -9.76008 -9.61021 -9.32831 -9.31773 -7.98072 -7.74058 -7.00625 -6.78060 -4.57991 0.90157 1.50759 1.53217 1.78376 2.37963 2.75630 2.82580 3.05372 3.08869 3.27574 3.52569 3.80300 3.88093 3.93055 4.13338 4.28986 4.47472 4.70395 4.71714 4.91214 5.09086 5.66187 5.71115 5.85984 6.02418 6.03904 6.60273 6.68540 6.82859 6.98287 7.13686 7.21932 7.40406 7.47418 7.71614 7.87644 7.99572 8.23258 8.42765 8.71454 8.77279 8.85570 9.69855 10.09905 Molecular weight = 317.10amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.002709 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.984084 B =10333.039867 C =11404.990063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.284 4.284 11 C 0.119 3.881 12 N -0.556 5.556 13 C 0.337 3.663 14 N -0.640 5.640 15 C 0.589 3.411 16 O -0.479 6.479 17 C -0.085 4.085 18 C 0.094 3.906 19 N -0.371 5.371 20 C 0.139 3.861 21 C 0.464 3.536 22 O -0.480 6.480 23 O -0.513 6.513 24 N -0.041 5.041 25 N -0.199 5.199 26 C -0.239 4.239 27 H 0.283 0.717 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.416 0.584 31 H 0.209 0.791 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.420 0.580 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -10.160 -10.422 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.308 4.308 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.113 3.887 14 N -0.285 5.285 15 C 0.371 3.629 16 O -0.348 6.348 17 C -0.223 4.223 18 C -0.060 4.060 19 N -0.158 5.158 20 C 0.015 3.985 21 C 0.303 3.697 22 O -0.364 6.364 23 O -0.326 6.326 24 N -0.021 5.021 25 N -0.074 5.074 26 C -0.265 4.265 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.252 0.748 31 H 0.226 0.774 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.281 0.719 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.358 -10.212 -10.842 21.394 hybrid contribution 0.173 1.322 0.679 1.496 sum -15.186 -8.890 -10.163 20.320 Atomic orbital electron populations 1.69777 1.07682 1.29532 1.33927 1.25977 0.94773 1.01530 0.91948 0.86239 0.80558 0.80341 0.79255 1.19208 1.20198 1.18467 1.19591 0.97886 0.90652 1.40454 0.89903 1.17567 0.89818 0.92343 0.86818 1.21880 1.05253 0.93874 1.09803 1.21748 0.90894 0.96823 0.94047 1.67203 1.15574 1.26455 1.18318 1.18121 0.87004 0.90963 0.92647 1.43159 1.25537 1.10650 1.49160 1.16820 0.81565 0.84825 0.79723 1.90889 1.65817 1.29754 1.48379 1.21785 1.01341 0.89160 1.10037 1.23336 0.87098 1.01867 0.93708 1.49877 1.17127 1.08799 1.40012 1.21094 0.79945 0.95201 1.02256 1.23036 0.86223 0.81647 0.78842 1.90897 1.87328 1.25290 1.32914 1.84430 1.17287 1.59841 1.70994 1.82097 1.12804 0.87040 1.20176 1.74698 1.01370 1.25104 1.06213 1.21564 1.02372 0.95581 1.06967 0.90592 0.87965 0.85828 0.74795 0.77403 0.83404 0.84062 0.71943 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.82 10.92 55.55 0.61 -19.21 16 2 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 3 Si 0.91 18.23 29.59 -169.99 -5.03 13.20 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.80 9.12 -37.65 -0.34 -12.14 16 8 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 9 C 0.14 3.80 5.60 -106.55 -0.60 3.20 16 10 C -0.28 -7.01 9.90 -38.70 -0.38 -7.39 16 11 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 12 N -0.56 -14.26 7.85 -12.53 -0.10 -14.35 16 13 C 0.34 8.41 7.41 -154.77 -1.15 7.26 16 14 N -0.64 -13.67 5.38 -12.45 -0.07 -13.73 16 15 C 0.59 11.76 7.78 -12.49 -0.10 11.66 16 16 O -0.48 -10.73 15.11 5.28 0.08 -10.65 16 17 C -0.09 -1.37 6.99 -83.56 -0.58 -1.95 16 18 C 0.09 1.08 11.27 -16.83 -0.19 0.89 16 19 N -0.37 -3.87 3.41 -62.24 -0.21 -4.08 16 20 C 0.14 0.66 7.13 -5.20 -0.04 0.63 16 21 C 0.46 3.31 8.36 36.00 0.30 3.61 16 22 O -0.48 -5.99 16.49 -18.75 -0.31 -6.30 16 23 O -0.51 -2.03 13.42 -39.25 -0.53 -2.56 16 24 N -0.04 -0.60 12.89 60.35 0.78 0.17 16 25 N -0.20 -3.31 12.04 32.84 0.40 -2.91 16 26 C -0.24 -6.23 8.62 -38.47 -0.33 -6.57 16 27 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 28 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 30 H 0.42 8.03 8.39 -40.82 -0.34 7.69 16 31 H 0.21 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.15 0.10 8.08 -51.93 -0.42 -0.32 16 33 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.42 0.27 9.10 45.56 0.41 0.68 16 35 H 0.13 3.36 6.20 -52.49 -0.33 3.04 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -37.48 327.26 -5.06 -42.54 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -1.91 Total: 9.27 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -3.70 Total: 3.67 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 1.40 Total: -54.12 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.76 Total: -19.50 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.48 -5.06 -42.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.240 kcal (2) G-P(sol) polarization free energy of solvation -37.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds