Wall clock time and date at job start Tue Mar 31 2020 11:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 120.00137 * 2 1 4 4 H 1.07998 * 119.99961 * 170.56239 * 3 2 1 5 5 C 1.38807 * 119.99882 * 350.56668 * 3 2 1 6 6 N 1.31614 * 120.00451 * 5.35497 * 5 3 2 7 7 Si 1.86800 * 120.00009 * 185.35877 * 5 3 2 8 8 H 1.48505 * 109.47142 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47351 * 119.99587 * 7 5 3 10 10 H 1.48497 * 109.47402 * 239.99922 * 7 5 3 11 11 S 1.65603 * 119.99833 * 179.97438 * 2 1 3 12 12 O 1.42094 * 106.40210 * 330.28215 * 11 2 1 13 13 O 1.42100 * 106.40255 * 197.35550 * 11 2 1 14 14 C 1.76208 * 107.21502 * 83.81989 * 11 2 1 15 15 C 1.36510 * 120.58790 * 245.82049 * 14 11 2 16 16 C 1.39664 * 122.32528 * 179.74747 * 15 14 11 17 17 C 1.36154 * 120.34418 * 0.52134 * 16 15 14 18 18 C 1.39089 * 117.96469 * 359.75255 * 17 16 15 19 19 C 1.39132 * 114.59304 * 180.02562 * 18 17 16 20 20 C 1.36125 * 117.96583 * 180.02562 * 19 18 17 21 21 C 1.39699 * 120.35315 * 359.97438 * 20 19 18 22 22 C 1.36476 * 122.33065 * 359.97424 * 21 20 19 23 23 C 1.40419 * 120.58841 * 66.10201 * 14 11 2 24 24 C 1.50931 * 107.39518 * 0.02562 * 19 18 17 25 25 C 1.50928 * 134.63445 * 179.77738 * 17 16 15 26 26 H 1.09001 * 109.47515 * 185.28611 * 1 2 3 27 27 H 1.09003 * 109.47084 * 305.28905 * 1 2 3 28 28 H 1.08999 * 109.46986 * 65.28461 * 1 2 3 29 29 H 0.97003 * 120.00395 * 180.02562 * 6 5 3 30 30 H 1.07999 * 118.84178 * 0.02562 * 15 14 11 31 31 H 1.08001 * 119.82620 * 180.27576 * 16 15 14 32 32 H 1.08000 * 119.82207 * 180.02562 * 20 19 18 33 33 H 1.07996 * 118.83929 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.59020 * 180.02562 * 22 21 20 35 35 H 1.08997 * 110.27836 * 118.93462 * 24 19 18 36 36 H 1.08998 * 110.28085 * 241.02961 * 24 19 18 37 37 H 1.09005 * 110.27759 * 61.01786 * 25 17 16 38 38 H 1.08994 * 110.27863 * 298.93966 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2187 1.1922 0.1534 5 6 1.4698 2.3799 -0.1970 6 7 0.1562 2.3835 -0.2785 7 14 2.4191 3.9817 -0.3467 8 1 3.8735 3.7088 -0.2210 9 1 2.1434 4.5989 -1.6688 10 1 1.9954 4.9109 0.7314 11 16 2.2930 -1.4342 0.0006 12 8 1.4683 -2.3733 0.6768 13 8 3.6204 -1.1310 0.4071 14 6 2.3968 -1.9772 -1.6725 15 6 1.7578 -3.1145 -2.0746 16 6 1.8113 -3.5752 -3.3920 17 6 2.5257 -2.8945 -4.3302 18 6 3.1864 -1.7366 -3.9336 19 6 3.8935 -1.0974 -4.9471 20 6 4.5668 0.0435 -4.6342 21 6 4.5384 0.5449 -3.3306 22 6 3.8485 -0.0706 -2.3267 23 6 3.1430 -1.2508 -2.6144 24 6 3.7049 -1.9056 -6.2078 25 6 2.8033 -3.0915 -5.8006 26 1 -0.3634 -1.0233 0.0947 27 1 -0.3633 0.5937 0.8389 28 1 -0.3633 0.4297 -0.9335 29 1 -0.3190 3.2179 -0.4166 30 1 1.1871 -3.6756 -1.3494 31 1 1.2865 -4.4781 -3.6670 32 1 5.1251 0.5643 -5.3980 33 1 5.0817 1.4517 -3.1093 34 1 3.8455 0.3421 -1.3286 35 1 3.2149 -1.3033 -6.9728 36 1 4.6661 -2.2696 -6.5706 37 1 1.8722 -3.0694 -6.3671 38 1 3.3232 -4.0354 -5.9638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872004607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:48 Heat of formation + Delta-G solvation = -4.864751 kcal Electronic energy + Delta-G solvation = -25014.950911 eV Core-core repulsion = 21528.906922 eV Total energy + Delta-G solvation = -3486.043990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.087 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90276 -36.36769 -35.86395 -35.76728 -35.51125 -34.54755 -31.42659 -30.12258 -29.46843 -28.74707 -26.56234 -24.49896 -23.45442 -22.68481 -21.31205 -20.93754 -18.56560 -17.49121 -17.03015 -16.60842 -16.28659 -15.81921 -15.34043 -14.88870 -14.55486 -14.41057 -14.05692 -13.35047 -13.22588 -12.97630 -12.81451 -12.65180 -12.54446 -12.09977 -12.03005 -11.68529 -11.54842 -11.29663 -11.12086 -11.06494 -10.94333 -10.82362 -10.64574 -10.59520 -10.57473 -10.26425 -10.10325 -9.78313 -9.45360 -9.21470 -8.30204 -8.24203 -7.48788 -6.45233 -3.96118 0.68526 1.42295 1.62849 2.25457 3.09368 3.15576 3.19841 3.24493 3.95337 4.26776 4.33776 4.48689 4.64061 4.74646 5.02288 5.06666 5.16183 5.24232 5.25812 5.39804 5.53480 5.62747 5.67537 5.79823 5.86953 5.91497 5.97828 6.06616 6.28575 6.31996 6.37250 6.57286 6.63345 6.69515 6.86499 6.94550 7.02805 7.15270 7.15665 7.27341 7.41765 7.62050 8.25724 8.65851 9.08635 10.43047 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.006742 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.493589 B = 4152.130272 C = 5319.070032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.817 5.817 3 C -0.260 4.260 4 H 0.120 0.880 5 C 0.037 3.963 6 N -0.843 5.843 7 Si 0.917 3.083 8 H -0.261 1.261 9 H -0.276 1.276 10 H -0.276 1.276 11 S 2.564 3.436 12 O -0.992 6.992 13 O -0.980 6.980 14 C -0.650 4.650 15 C -0.024 4.024 16 C -0.131 4.131 17 C -0.056 4.056 18 C -0.098 4.098 19 C -0.093 4.093 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.103 4.103 23 C 0.034 3.966 24 C -0.073 4.073 25 C -0.078 4.078 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.271 0.729 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -4.415 -10.483 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.644 5.644 3 C -0.403 4.403 4 H 0.137 0.863 5 C -0.173 4.173 6 N -0.485 5.485 7 Si 0.742 3.258 8 H -0.185 1.185 9 H -0.202 1.202 10 H -0.202 1.202 11 S 2.658 3.342 12 O -0.982 6.982 13 O -0.969 6.969 14 C -0.727 4.727 15 C -0.043 4.043 16 C -0.150 4.150 17 C -0.056 4.056 18 C -0.099 4.099 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.131 4.131 22 C -0.121 4.121 23 C 0.033 3.967 24 C -0.109 4.109 25 C -0.115 4.115 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.175 0.825 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.232 -4.989 -9.848 11.503 hybrid contribution 0.132 0.819 -1.037 1.328 sum 3.365 -4.169 -10.885 12.132 Atomic orbital electron populations 1.21474 0.78728 0.97334 1.04223 1.54056 1.13833 1.19154 1.77326 1.19907 0.94913 0.82486 1.42951 0.86263 1.25522 0.95792 1.00032 0.95928 1.70252 1.06375 1.27953 1.43896 0.85993 0.80336 0.81099 0.78376 1.18475 1.20185 1.20204 1.09500 0.73891 0.73863 0.76947 1.93374 1.68714 1.62787 1.73282 1.93380 1.37568 1.83876 1.82086 1.32563 1.06329 1.04079 1.29773 1.20739 0.94431 0.93603 0.95521 1.20357 1.01190 1.00688 0.92728 1.20072 0.95587 0.94498 0.95467 1.18338 1.00085 0.97027 0.94404 1.19847 0.98319 0.95978 0.95195 1.20212 1.00270 0.95581 0.96484 1.20862 0.99812 1.00157 0.92312 1.21936 0.94801 0.93592 1.01779 1.17106 0.94175 0.93696 0.91710 1.20870 1.00019 0.94963 0.95084 1.20967 1.00138 0.98935 0.91418 0.95008 0.90228 0.92129 0.91768 0.84797 0.85963 0.86350 0.85850 0.82518 0.89946 0.90004 0.89679 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.96 8.87 59.85 0.53 3.50 16 2 N -0.82 -19.85 3.32 -66.69 -0.22 -20.07 16 3 C -0.26 -6.39 7.94 -15.06 -0.12 -6.51 16 4 H 0.12 2.89 5.78 -52.49 -0.30 2.59 16 5 C 0.04 0.89 5.46 -17.43 -0.10 0.79 16 6 N -0.84 -20.49 9.49 55.49 0.53 -19.97 16 7 Si 0.92 18.56 29.56 -169.99 -5.02 13.53 16 8 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 9 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 10 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 11 S 2.56 61.08 5.13 -107.50 -0.55 60.53 16 12 O -0.99 -24.56 15.68 -57.17 -0.90 -25.45 16 13 O -0.98 -25.04 15.07 -57.17 -0.86 -25.90 16 14 C -0.65 -14.19 5.93 -39.38 -0.23 -14.42 16 15 C -0.02 -0.45 9.46 -39.67 -0.38 -0.83 16 16 C -0.13 -2.15 10.00 -39.80 -0.40 -2.54 16 17 C -0.06 -0.91 6.38 -104.94 -0.67 -1.58 16 18 C -0.10 -1.84 5.61 -108.34 -0.61 -2.45 16 19 C -0.09 -1.49 6.38 -104.94 -0.67 -2.16 16 20 C -0.11 -1.67 10.00 -39.80 -0.40 -2.07 16 21 C -0.11 -2.00 9.89 -39.67 -0.39 -2.39 16 22 C -0.10 -2.17 8.94 -39.37 -0.35 -2.52 16 23 C 0.03 0.73 5.72 -107.32 -0.61 0.12 16 24 C -0.07 -0.84 6.90 -27.02 -0.19 -1.03 16 25 C -0.08 -0.91 6.90 -27.02 -0.19 -1.10 16 26 H 0.03 0.68 7.01 -51.93 -0.36 0.31 16 27 H 0.08 1.89 7.15 -51.93 -0.37 1.51 16 28 H 0.06 1.43 6.97 -51.93 -0.36 1.07 16 29 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 30 H 0.13 2.40 7.27 -52.49 -0.38 2.02 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.16 3.50 3.39 -52.49 -0.18 3.32 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -29.92 316.55 -11.08 -41.00 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.05 Total: 6.76 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: -4.77 Total: -35.21 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.31 Total: -40.04 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -1.76 Total: -51.35 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 16 Polarization: 61.08 SS G_CDS: -0.55 Total: 60.53 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.92 -11.08 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872004607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.136 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds