Wall clock time and date at job start Tue Mar 31 2020 11:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29419 * 125.69352 * 2 1 4 4 N 1.26395 * 116.47294 * 179.68450 * 3 2 1 5 5 C 1.29412 * 116.47613 * 0.52944 * 4 3 2 6 6 C 1.50699 * 125.69580 * 179.77433 * 5 4 3 7 7 H 1.09007 * 109.46847 * 194.68899 * 6 5 4 8 8 C 1.53001 * 109.47357 * 74.69303 * 6 5 4 9 9 N 1.46494 * 109.47290 * 314.69010 * 6 5 4 10 10 C 1.34776 * 120.00009 * 204.99952 * 9 6 5 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 6 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 6 13 13 C 1.39235 * 120.28378 * 356.68142 * 12 10 9 14 14 C 1.38223 * 120.09183 * 180.28231 * 13 12 10 15 15 C 1.38824 * 120.67578 * 359.69536 * 14 13 12 16 16 C 1.37601 * 120.57302 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87956 * 0.02562 * 16 15 14 18 18 C 1.40891 * 120.32906 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00234 * 145.79747 * 18 17 16 20 20 C 1.40273 * 119.99571 * 325.79352 * 18 17 16 21 21 N 1.30635 * 120.00253 * 340.74281 * 20 18 17 22 22 Si 1.86798 * 119.99912 * 160.74547 * 20 18 17 23 23 H 1.48507 * 109.47415 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47275 * 299.99863 * 22 20 18 25 25 H 1.48501 * 109.47305 * 59.99898 * 22 20 18 26 26 S 1.71211 * 125.69752 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47145 * 270.03950 * 1 2 3 28 28 H 1.09005 * 109.47495 * 30.04393 * 1 2 3 29 29 H 1.08998 * 109.47440 * 150.04002 * 1 2 3 30 30 H 1.08999 * 109.47061 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47003 * 300.00075 * 8 6 5 32 32 H 1.08998 * 109.47084 * 59.99927 * 8 6 5 33 33 H 0.96994 * 119.99831 * 25.00024 * 9 6 5 34 34 H 1.08001 * 119.94893 * 359.97438 * 13 12 10 35 35 H 1.07988 * 119.65914 * 179.72052 * 14 13 12 36 36 H 1.08002 * 119.71756 * 180.02562 * 15 14 13 37 37 H 1.07997 * 120.06577 * 180.02562 * 16 15 14 38 38 H 0.97003 * 120.00071 * 354.83739 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8486 0.0062 5 6 3.8936 -0.3873 0.0012 6 6 5.3232 -0.8639 0.0021 7 1 5.3540 -1.9207 -0.2635 8 6 5.9245 -0.6706 1.3957 9 7 6.0959 -0.0923 -0.9745 10 6 7.2083 -0.6203 -1.5224 11 8 7.5704 -1.7374 -1.2065 12 6 7.9862 0.1566 -2.5048 13 6 7.5401 1.4077 -2.9225 14 6 8.2695 2.1300 -3.8480 15 6 9.4537 1.6246 -4.3670 16 6 9.9231 0.3937 -3.9693 17 6 9.1989 -0.3623 -3.0291 18 6 9.6705 -1.6239 -2.6156 19 1 9.5070 -1.9555 -1.6009 20 6 10.3523 -2.4493 -3.5220 21 7 10.2331 -2.2467 -4.8070 22 14 11.4308 -3.8381 -2.8915 23 1 12.0353 -4.5568 -4.0419 24 1 12.5077 -3.2790 -2.0354 25 1 10.6064 -4.7830 -2.0961 26 16 2.5060 -1.3904 0.0006 27 1 -0.3633 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3634 -0.8903 -0.5132 30 1 6.9584 -1.0158 1.3964 31 1 5.8936 0.3861 1.6613 32 1 5.3496 -1.2448 2.1222 33 1 5.8068 0.7986 -1.2267 34 1 6.6203 1.8120 -2.5264 35 1 7.9147 3.0977 -4.1705 36 1 10.0115 2.2023 -5.0891 37 1 10.8456 0.0086 -4.3780 38 1 9.6159 -1.5751 -5.1370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:00 Heat of formation + Delta-G solvation = 38.090189 kcal Electronic energy + Delta-G solvation = -23335.223737 eV Core-core repulsion = 19883.335164 eV Total energy + Delta-G solvation = -3451.888572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50531 -39.19391 -37.24252 -35.39132 -33.98096 -32.94288 -31.19606 -29.69418 -29.14833 -28.47485 -25.72980 -25.26798 -23.47355 -22.17037 -20.98295 -20.01322 -19.64819 -18.98682 -18.09561 -16.81594 -16.11078 -15.71427 -15.01387 -14.65259 -14.28275 -14.26292 -14.07463 -13.91191 -13.51943 -13.46253 -13.39789 -12.95787 -12.68841 -12.61222 -12.27108 -12.01608 -11.75035 -11.47821 -11.14773 -10.93170 -10.75916 -10.63953 -10.39964 -10.37646 -10.17335 -9.92236 -9.83422 -9.62424 -9.09427 -8.60547 -8.56009 -7.80682 -7.62014 -7.16805 -4.48355 0.20519 0.65861 1.14523 2.20816 2.36791 2.73478 3.19204 3.29883 3.39587 3.69748 3.80405 3.99383 4.03395 4.27223 4.61762 4.62788 4.89634 5.00117 5.19651 5.24864 5.33735 5.46298 5.49582 5.64536 5.84093 5.90977 6.05146 6.17178 6.25721 6.48240 6.71175 6.92459 6.98882 7.26505 7.48897 7.58262 7.71896 7.86822 8.06246 8.18811 8.29564 8.37299 8.70966 8.83639 9.24957 10.02396 Molecular weight = 317.09amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003585 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.096424 B = 7808.109267 C = 8791.538551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 N -0.260 5.260 4 N -0.251 5.251 5 C -0.017 4.017 6 C 0.231 3.769 7 H 0.107 0.893 8 C -0.155 4.155 9 N -0.737 5.737 10 C 0.568 3.432 11 O -0.535 6.535 12 C -0.266 4.266 13 C -0.041 4.041 14 C -0.258 4.258 15 C -0.074 4.074 16 C -0.201 4.201 17 C 0.123 3.877 18 C -0.466 4.466 19 H 0.106 0.894 20 C 0.031 3.969 21 N -0.793 5.793 22 Si 1.070 2.930 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.273 1.273 26 S 0.182 5.818 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 0.166 8.472 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.305 4.305 3 N -0.098 5.098 4 N -0.088 5.088 5 C -0.297 4.297 6 C 0.122 3.878 7 H 0.125 0.875 8 C -0.215 4.215 9 N -0.394 5.394 10 C 0.363 3.637 11 O -0.414 6.414 12 C -0.271 4.271 13 C -0.060 4.060 14 C -0.277 4.277 15 C -0.093 4.093 16 C -0.220 4.220 17 C 0.118 3.882 18 C -0.493 4.493 19 H 0.124 0.876 20 C -0.191 4.191 21 N -0.416 5.416 22 Si 0.894 3.106 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.198 1.198 26 S 0.426 5.574 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.389 -1.505 8.144 15.743 hybrid contribution -1.371 2.033 0.226 2.462 sum -14.760 0.528 8.371 16.976 Atomic orbital electron populations 1.20368 0.83917 1.04735 1.04265 1.29259 1.04344 0.92107 1.04810 1.71461 0.96901 1.26799 1.14679 1.71367 1.06369 1.16904 1.14206 1.29511 1.03318 0.92860 1.04010 1.19150 0.80130 0.97117 0.91428 0.87521 1.22188 1.02491 1.02818 0.94011 1.46077 1.28022 1.20114 1.45158 1.18415 0.78906 0.86021 0.80388 1.90676 1.68556 1.19793 1.62338 1.19308 0.99196 0.98377 1.10223 1.20758 0.96665 0.93428 0.95185 1.20256 0.99927 1.01203 1.06330 1.20755 0.95524 0.95444 0.97598 1.21255 1.00881 0.95377 1.04488 1.17486 0.88273 0.93153 0.89289 1.21177 1.26727 0.99873 1.01538 0.87628 1.27274 0.96522 1.01892 0.93377 1.70390 1.28046 1.28406 1.14763 0.83559 0.76043 0.74761 0.76287 1.19954 1.19935 1.19781 1.83731 0.97228 1.11499 1.64978 0.89160 0.88796 0.89694 0.90069 0.91664 0.91988 0.76395 0.89050 0.88833 0.88828 0.87481 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.48 36.00 0.38 -0.07 16 2 C -0.03 -0.28 7.53 -13.30 -0.10 -0.38 16 3 N -0.26 -3.71 11.66 32.58 0.38 -3.33 16 4 N -0.25 -3.87 11.33 32.58 0.37 -3.50 16 5 C -0.02 -0.24 6.33 -13.30 -0.08 -0.33 16 6 C 0.23 3.56 3.09 -69.08 -0.21 3.35 16 7 H 0.11 1.68 7.58 -51.93 -0.39 1.29 16 8 C -0.16 -2.14 9.47 37.16 0.35 -1.79 16 9 N -0.74 -13.53 5.02 -56.01 -0.28 -13.81 16 10 C 0.57 12.96 7.69 -12.52 -0.10 12.86 16 11 O -0.54 -13.51 13.22 5.27 0.07 -13.44 16 12 C -0.27 -6.48 5.92 -104.36 -0.62 -7.10 16 13 C -0.04 -0.90 9.53 -39.22 -0.37 -1.27 16 14 C -0.26 -5.52 10.03 -39.37 -0.39 -5.91 16 15 C -0.07 -1.65 10.01 -39.60 -0.40 -2.05 16 16 C -0.20 -5.00 7.87 -38.88 -0.31 -5.30 16 17 C 0.12 3.24 5.17 -106.54 -0.55 2.69 16 18 C -0.47 -12.62 7.65 -37.81 -0.29 -12.91 16 19 H 0.11 2.95 5.92 -52.49 -0.31 2.64 16 20 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 21 N -0.79 -21.07 12.57 55.56 0.70 -20.37 16 22 Si 1.07 22.18 29.98 -169.99 -5.10 17.08 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 S 0.18 1.88 23.04 -107.50 -2.48 -0.59 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 7.05 6.38 -40.82 -0.26 6.79 16 34 H 0.09 1.73 6.41 -52.49 -0.34 1.39 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.11 2.71 6.94 -52.49 -0.36 2.34 16 38 H 0.30 8.13 6.55 -40.82 -0.27 7.86 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -30.87 338.71 -8.12 -38.99 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.11 Total: 11.39 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.78 Total: -17.52 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.17 Total: -41.02 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.10 Total: 17.08 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.48 Total: -0.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.87 -8.12 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.082 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds