Wall clock time and date at job start Tue Mar 31 2020 11:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99899 * 2 1 4 4 C 1.53000 * 109.47262 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.46825 * 65.00241 * 4 3 2 6 6 C 1.34835 * 116.99790 * 180.02562 * 5 4 3 7 7 O 1.21581 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.46956 * 119.99980 * 179.97438 * 6 5 4 9 9 C 1.43197 * 119.99623 * 0.02562 * 8 6 5 10 10 N 5.34519 * 121.05169 * 257.88577 * 2 1 3 11 11 C 1.37948 * 120.00146 * 179.97438 * 8 6 5 12 12 C 1.46344 * 119.99964 * 172.51763 * 11 8 6 13 13 C 1.40321 * 120.12359 * 326.70330 * 12 11 8 14 14 C 1.36527 * 119.87292 * 179.76494 * 13 12 11 15 15 C 1.39285 * 120.12222 * 0.52003 * 14 13 12 16 16 O 1.35495 * 119.87224 * 179.75971 * 15 14 13 17 17 C 1.34744 * 117.00136 * 187.20860 * 16 15 14 18 18 H 1.07998 * 119.99950 * 354.89147 * 17 16 15 19 19 C 1.38775 * 119.99915 * 174.88509 * 17 16 15 20 20 N 1.31464 * 120.00462 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99714 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47162 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47244 * 120.00264 * 21 19 17 24 24 H 1.48498 * 109.47528 * 240.00204 * 21 19 17 25 25 C 1.39275 * 120.25020 * 359.73767 * 15 14 13 26 26 C 1.36530 * 120.12812 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.47475 * 60.00022 * 1 2 3 28 28 H 1.09006 * 109.46833 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47321 * 299.99286 * 1 2 3 30 30 H 1.09004 * 109.46825 * 59.99826 * 3 2 1 31 31 H 1.08998 * 109.47000 * 300.00302 * 3 2 1 32 32 H 1.09002 * 109.47037 * 305.00305 * 4 3 2 33 33 H 1.09000 * 109.47226 * 185.00101 * 4 3 2 34 34 H 1.08001 * 119.99703 * 352.79126 * 11 8 6 35 35 H 1.08001 * 120.06108 * 0.02562 * 13 12 11 36 36 H 1.07995 * 119.93624 * 180.27466 * 14 13 12 37 37 H 0.97002 * 120.00309 * 179.97438 * 20 19 17 38 38 H 1.08000 * 119.93491 * 179.97438 * 25 15 14 39 39 H 1.08000 * 120.06027 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9727 0.5696 -1.2398 6 6 5.2994 0.3891 -1.3991 7 8 6.0695 0.7370 -0.5251 8 6 5.8145 -0.2280 -2.6293 9 6 4.9074 -0.6372 -3.6590 10 7 4.1861 -0.9610 -4.4773 11 6 7.1718 -0.4121 -2.7926 12 6 7.6747 -1.1714 -3.9382 13 6 6.9321 -2.2456 -4.4518 14 6 7.4038 -2.9474 -5.5237 15 6 8.6247 -2.6057 -6.1005 16 8 9.0903 -3.3088 -7.1611 17 6 10.3401 -3.0287 -7.5796 18 1 10.8917 -2.2175 -7.1280 19 6 10.9185 -3.7829 -8.5909 20 7 10.2469 -4.7701 -9.1409 21 14 12.6514 -3.3951 -9.1705 22 1 13.1869 -2.2464 -8.3965 23 1 13.5206 -4.5809 -8.9608 24 1 12.6249 -3.0501 -10.6146 25 6 9.3685 -1.5439 -5.5915 26 6 8.9037 -0.8314 -4.5236 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 1.6885 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 7.8632 0.0003 -2.0726 35 1 5.9873 -2.5140 -4.0026 36 1 6.8310 -3.7715 -5.9226 37 1 10.6511 -5.2970 -9.8480 38 1 10.3147 -1.2836 -6.0424 39 1 9.4812 -0.0080 -4.1300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008220521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:56 Heat of formation + Delta-G solvation = -82.183922 kcal Electronic energy + Delta-G solvation = -24336.764557 eV Core-core repulsion = 20404.614885 eV Total energy + Delta-G solvation = -3932.149671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40380 -39.45973 -38.23536 -37.51605 -36.36512 -36.02288 -33.35529 -32.55224 -31.02386 -30.66816 -28.86756 -26.68177 -25.97118 -24.46933 -22.99847 -22.30683 -21.41434 -20.95703 -18.69404 -18.39272 -17.29179 -17.22887 -17.02960 -16.00262 -15.85273 -15.52475 -15.27791 -14.86031 -14.81801 -14.32421 -14.06068 -13.92833 -13.72719 -13.28200 -13.15192 -12.92860 -12.80945 -12.62814 -12.39710 -12.13333 -11.97059 -11.89982 -11.68834 -11.62487 -11.29473 -11.21064 -10.85923 -10.76720 -10.64184 -10.54123 -10.03761 -9.72376 -9.53436 -9.04057 -8.58186 -7.34713 -6.83587 -4.34549 0.41927 2.07435 2.12723 2.52715 2.56180 2.94530 2.95625 3.02006 3.13637 3.39354 3.68596 3.77518 4.20202 4.30475 4.55253 4.66931 4.76204 4.80893 4.91557 4.93985 5.04074 5.06770 5.10468 5.19340 5.32939 5.38529 5.41877 5.43150 5.78165 5.84489 5.95670 6.20847 6.31225 6.37056 6.62448 6.74231 6.77578 6.97202 7.02200 7.10163 7.47648 7.61954 7.68991 7.94330 8.59781 9.25552 10.31763 Molecular weight = 317.11amu Principal moments of inertia in cm(-1) A = 0.032833 B = 0.002174 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.587265 B =12876.361342 C =13552.728003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.070 3.930 5 O -0.346 6.346 6 C 0.531 3.469 7 O -0.518 6.518 8 C -0.181 4.181 9 C 0.271 3.729 10 N -0.430 5.430 11 C 0.132 3.868 12 C -0.236 4.236 13 C -0.027 4.027 14 C -0.196 4.196 15 C 0.174 3.826 16 O -0.148 6.148 17 C -0.390 4.390 18 H 0.103 0.897 19 C 0.042 3.958 20 N -0.839 5.839 21 Si 0.949 3.051 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.244 4.244 26 C -0.015 4.015 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.278 0.722 38 H 0.135 0.865 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 11.014 15.498 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.016 4.016 4 C -0.004 4.004 5 O -0.262 6.262 6 C 0.378 3.622 7 O -0.410 6.410 8 C -0.186 4.186 9 C -0.043 4.043 10 N -0.107 5.107 11 C 0.109 3.891 12 C -0.237 4.237 13 C -0.045 4.045 14 C -0.215 4.215 15 C 0.115 3.885 16 O -0.047 6.047 17 C -0.465 4.465 18 H 0.120 0.880 19 C -0.166 4.166 20 N -0.470 5.470 21 Si 0.772 3.228 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.263 4.263 26 C -0.034 4.034 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.152 0.848 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.821 10.068 14.139 19.943 hybrid contribution 0.839 0.599 0.163 1.043 sum -8.982 10.667 14.302 19.975 Atomic orbital electron populations 1.22763 0.80784 1.03080 0.99905 1.87984 1.19872 1.27035 1.95400 1.22619 0.91617 0.85889 1.01460 1.23062 0.93080 0.98884 0.85376 1.86680 1.25055 1.73863 1.40625 1.20422 0.80384 0.75403 0.86038 1.90857 1.57855 1.49444 1.42801 1.16861 0.91011 1.17835 0.92942 1.25132 0.92929 0.93145 0.93090 1.81287 1.09263 1.10134 1.10007 1.23095 0.92115 0.82410 0.91453 1.18360 0.99334 1.03355 1.02674 1.20801 0.96714 0.93344 0.93691 1.19907 0.97128 1.04785 0.99716 1.19712 0.92627 0.90096 0.86021 1.83862 1.31012 1.53011 1.36813 1.21678 0.87990 1.17306 1.19491 0.87994 1.25518 1.00654 0.94865 0.95586 1.70003 1.37531 1.16679 1.22810 0.85514 0.79139 0.79064 0.79036 1.18627 1.19690 1.19724 1.20857 1.03440 1.00050 1.01991 1.20719 0.92414 0.96436 0.93781 0.93875 0.89430 0.94104 0.90949 0.91975 0.90113 0.89410 0.83102 0.86480 0.85892 0.91211 0.84770 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.19 10.67 -38.80 -0.41 -4.60 16 3 C 0.06 0.51 6.33 37.16 0.24 0.74 16 4 C 0.07 0.69 5.86 37.16 0.22 0.91 16 5 O -0.35 -4.66 9.73 -43.65 -0.42 -5.09 16 6 C 0.53 7.42 7.87 34.26 0.27 7.69 16 7 O -0.52 -7.61 16.10 -19.33 -0.31 -7.92 16 8 C -0.18 -2.60 5.82 -104.55 -0.61 -3.20 16 9 C 0.27 4.51 11.36 -22.42 -0.25 4.26 16 10 N -0.43 -8.00 18.19 41.91 0.76 -7.24 16 11 C 0.13 1.74 9.44 -36.43 -0.34 1.40 16 12 C -0.24 -3.77 5.52 -105.07 -0.58 -4.35 16 13 C -0.03 -0.48 8.25 -39.42 -0.33 -0.80 16 14 C -0.20 -3.99 9.93 -39.81 -0.40 -4.39 16 15 C 0.17 3.87 6.66 -38.81 -0.26 3.62 16 16 O -0.15 -3.89 9.74 1.07 0.01 -3.88 16 17 C -0.39 -9.87 9.48 30.93 0.29 -9.57 16 18 H 0.10 2.33 5.19 -52.49 -0.27 2.06 16 19 C 0.04 1.05 5.50 -17.51 -0.10 0.95 16 20 N -0.84 -22.67 13.67 55.49 0.76 -21.91 16 21 Si 0.95 18.57 29.55 -169.99 -5.02 13.54 16 22 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 C -0.24 -4.70 9.10 -39.81 -0.36 -5.06 16 26 C -0.01 -0.24 9.75 -39.42 -0.38 -0.62 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.15 1.60 7.61 -52.49 -0.40 1.21 16 35 H 0.12 2.02 5.87 -52.49 -0.31 1.71 16 36 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 37 H 0.28 6.80 8.31 -40.82 -0.34 6.47 16 38 H 0.13 2.51 5.64 -52.49 -0.30 2.22 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -30.75 356.56 -4.96 -35.71 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.22 Total: 3.11 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.48 Total: -7.10 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 1.52 Total: -29.16 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.14 Total: -21.49 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.75 -4.96 -35.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008220521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.469 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds