Wall clock time and date at job start Tue Mar 31 2020 12:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86800 * 119.99602 * 2 1 4 4 H 1.48505 * 109.46907 * 240.00075 * 3 2 1 5 5 H 1.48498 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47015 * 120.00199 * 3 2 1 7 7 C 1.38796 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.81009 * 99.99894 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.46897 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00478 * 341.19272 * 11 10 9 13 13 N 1.34780 * 119.99799 * 161.19832 * 11 10 9 14 14 C 1.46497 * 120.00045 * 1.68588 * 13 11 10 15 15 C 1.53001 * 117.49762 * 23.29743 * 14 13 11 16 16 C 1.52998 * 117.49859 * 314.67586 * 14 13 11 17 17 C 1.46496 * 119.99853 * 181.68629 * 13 11 10 18 18 H 1.09002 * 110.35033 * 170.05907 * 17 13 11 19 19 C 1.54349 * 110.30485 * 292.18236 * 17 13 11 20 20 C 1.54339 * 102.39227 * 92.57520 * 19 17 13 21 21 C 1.51376 * 105.17024 * 26.35309 * 20 19 17 22 22 C 1.38492 * 130.39630 * 162.81419 * 21 20 19 23 23 C 1.38098 * 120.21784 * 179.97438 * 22 21 20 24 24 C 1.38258 * 119.93695 * 359.97438 * 23 22 21 25 25 C 1.38104 * 119.93029 * 359.97438 * 24 23 22 26 26 C 1.38220 * 109.75443 * 342.80477 * 21 20 19 27 27 H 0.96995 * 120.00349 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46766 * 59.99925 * 10 9 7 29 29 H 1.09005 * 109.46837 * 300.00425 * 10 9 7 30 30 H 1.08999 * 115.55087 * 169.00302 * 14 13 11 31 31 H 1.09003 * 117.50052 * 0.02562 * 15 14 13 32 32 H 1.09006 * 117.49969 * 145.02099 * 15 14 13 33 33 H 1.09000 * 117.49664 * 214.97790 * 16 14 13 34 34 H 1.09000 * 117.49896 * 359.97438 * 16 14 13 35 35 H 1.09001 * 110.81880 * 334.35133 * 19 17 13 36 36 H 1.09003 * 110.82435 * 210.80731 * 19 17 13 37 37 H 1.09005 * 110.30645 * 145.27081 * 20 19 17 38 38 H 1.08997 * 110.30785 * 267.42783 * 20 19 17 39 39 H 1.08008 * 119.89207 * 0.02562 * 22 21 20 40 40 H 1.07996 * 120.03335 * 180.02562 * 23 22 21 41 41 H 1.07991 * 120.03536 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.89121 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5161 -3.8914 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.8438 -5.5221 0.3370 13 7 2.7862 -6.3211 -0.3775 14 6 4.1788 -6.0607 -0.7505 15 6 4.8315 -4.7906 -0.2012 16 6 4.4514 -4.8770 -1.6807 17 6 2.2616 -7.6884 -0.4135 18 1 2.9734 -8.3548 -0.9009 19 6 1.9575 -8.1833 1.0165 20 6 0.4701 -7.8084 1.1874 21 6 -0.0977 -7.7909 -0.2157 22 6 -1.4112 -7.8319 -0.6529 23 6 -1.6951 -7.8038 -2.0041 24 6 -0.6655 -7.7339 -2.9242 25 6 0.6448 -7.6919 -2.4901 26 6 0.9317 -7.7219 -1.1355 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7312 0.8895 29 1 3.1247 -3.7312 -0.8905 30 1 4.8087 -6.9433 -0.8611 31 1 4.2250 -4.1490 0.4380 32 1 5.8913 -4.8374 0.0498 33 1 5.2611 -4.9807 -2.4031 34 1 3.5947 -4.2922 -2.0156 35 1 2.5752 -7.6607 1.7468 36 1 2.0964 -9.2619 1.0910 37 1 -0.0414 -8.5565 1.7930 38 1 0.3785 -6.8233 1.6448 39 1 -2.2162 -7.8853 0.0652 40 1 -2.7205 -7.8355 -2.3418 41 1 -0.8858 -7.7114 -3.9812 42 1 1.4486 -7.6377 -3.2094 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064809321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:38 Heat of formation + Delta-G solvation = 78.873713 kcal Electronic energy + Delta-G solvation = -24762.759454 eV Core-core repulsion = 21416.179731 eV Total energy + Delta-G solvation = -3346.579723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00759 -39.06528 -37.01421 -35.55590 -32.59800 -32.41668 -30.65917 -29.45083 -28.68875 -26.37612 -25.45941 -22.84410 -22.47481 -22.39192 -21.15453 -20.67847 -19.06980 -17.77031 -16.98796 -16.16398 -15.48960 -15.28015 -14.94420 -14.79400 -14.63598 -14.60198 -14.36364 -14.07795 -13.61657 -13.20311 -12.87551 -12.85021 -12.58821 -12.22335 -11.81319 -11.59617 -11.39551 -11.14491 -11.07267 -11.01091 -10.98397 -10.80953 -10.70171 -10.56053 -10.48543 -10.28996 -9.67007 -9.25560 -9.03210 -8.57739 -8.26611 -8.12214 -8.08327 -6.46557 -6.20260 -3.90442 1.54268 1.71638 2.87990 3.05991 3.23660 3.25494 3.29162 3.59222 3.95372 4.10776 4.21636 4.39398 4.71510 4.75023 4.84074 4.99858 5.07671 5.10951 5.14538 5.21779 5.24697 5.27000 5.41016 5.48935 5.54213 5.61197 5.73476 5.78135 5.85532 5.86100 5.94699 6.00688 6.03432 6.21775 6.28915 6.32154 6.35888 6.57549 6.68738 6.75306 6.80332 6.92620 7.27479 7.59569 7.61764 8.36087 8.66099 9.24842 10.86996 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.004480 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.343660 B = 6248.401583 C = 7148.854953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.071 0.929 9 S -0.072 6.072 10 C -0.185 4.185 11 C 0.531 3.469 12 O -0.493 6.493 13 N -0.584 5.584 14 C 0.079 3.921 15 C -0.230 4.230 16 C -0.205 4.205 17 C 0.195 3.805 18 H 0.091 0.909 19 C -0.130 4.130 20 C -0.084 4.084 21 C -0.029 4.029 22 C -0.119 4.119 23 C -0.108 4.108 24 C -0.137 4.137 25 C -0.090 4.090 26 C -0.119 4.119 27 H 0.268 0.732 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -18.044 -2.337 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.680 4.680 8 H 0.090 0.910 9 S 0.155 5.845 10 C -0.334 4.334 11 C 0.319 3.681 12 O -0.366 6.366 13 N -0.318 5.318 14 C -0.026 4.026 15 C -0.267 4.267 16 C -0.243 4.243 17 C 0.092 3.908 18 H 0.109 0.891 19 C -0.168 4.168 20 C -0.121 4.121 21 C -0.030 4.030 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.155 4.155 25 C -0.108 4.108 26 C -0.120 4.120 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.708 -18.252 -2.130 18.969 hybrid contribution 2.053 1.485 -0.211 2.542 sum 6.761 -16.767 -2.341 18.230 Atomic orbital electron populations 1.70014 1.05943 1.27482 1.46861 1.24977 0.94995 0.98957 0.94578 0.86255 0.79262 0.81363 0.78809 1.19942 1.20847 1.19932 1.22783 0.94764 0.91547 1.58929 0.91033 1.85373 1.05733 0.96713 1.96647 1.24961 1.06263 0.95895 1.06241 1.20231 0.85695 0.85938 0.76231 1.90675 1.17422 1.83773 1.44762 1.47619 1.09807 1.06403 1.67923 1.21621 0.83577 0.93581 1.03790 1.24771 1.02422 1.01433 0.98094 1.23783 1.04140 1.02637 0.93696 1.20289 0.92677 0.82839 0.95038 0.89063 1.22677 0.97356 1.00670 0.96119 1.21307 0.93722 1.03298 0.93739 1.20361 0.92843 0.94056 0.95726 1.20535 0.95408 1.02206 0.95542 1.20976 0.98841 0.99743 0.93056 1.20883 0.92588 1.02784 0.99222 1.20495 0.96486 0.99692 0.94169 1.20486 0.95312 1.02727 0.93437 0.92196 0.88114 0.86568 0.85381 0.84168 0.88458 0.88275 0.86721 0.90345 0.90557 0.92118 0.87207 0.86664 0.86352 0.86397 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.07 -1.94 20.67 -107.50 -2.22 -4.16 16 10 C -0.19 -3.74 3.84 36.00 0.14 -3.60 16 11 C 0.53 9.96 6.92 -10.99 -0.08 9.88 16 12 O -0.49 -10.53 10.02 5.56 0.06 -10.48 16 13 N -0.58 -8.43 2.84 -158.73 -0.45 -8.88 16 14 C 0.08 0.92 6.61 -67.93 -0.45 0.48 16 15 C -0.23 -2.80 9.38 -26.73 -0.25 -3.06 16 16 C -0.20 -2.53 9.42 -26.73 -0.25 -2.78 16 17 C 0.19 2.51 3.51 -68.05 -0.24 2.27 16 18 H 0.09 0.93 7.90 -51.93 -0.41 0.52 16 19 C -0.13 -1.55 6.55 -25.32 -0.17 -1.71 16 20 C -0.08 -1.20 5.96 -26.85 -0.16 -1.36 16 21 C -0.03 -0.46 4.66 -104.20 -0.49 -0.94 16 22 C -0.12 -1.80 10.04 -39.54 -0.40 -2.20 16 23 C -0.11 -1.52 10.05 -39.63 -0.40 -1.92 16 24 C -0.14 -1.90 10.05 -39.62 -0.40 -2.30 16 25 C -0.09 -1.30 10.04 -39.53 -0.40 -1.69 16 26 C -0.12 -1.78 4.71 -104.21 -0.49 -2.27 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.10 1.95 5.93 -51.92 -0.31 1.64 16 29 H 0.12 2.20 3.15 -51.91 -0.16 2.03 16 30 H 0.13 1.10 8.03 -51.93 -0.42 0.68 16 31 H 0.14 2.07 3.34 -53.75 -0.18 1.89 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 1.76 5.79 -51.93 -0.30 1.46 16 35 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.91 5.89 -51.93 -0.31 1.61 16 39 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -33.36 343.37 -10.99 -44.35 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.43 Total: 7.06 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -3.82 Total: -23.96 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.28 Total: -34.38 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.94 SS G_CDS: -2.22 Total: -4.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.36 -10.99 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064809321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.224 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds