Wall clock time and date at job start Tue Mar 31 2020 11:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47375 * 2 1 4 4 C 1.50703 * 109.47332 * 239.99801 * 2 1 3 5 5 H 1.07995 * 119.99884 * 240.00009 * 4 2 1 6 6 C 1.37875 * 119.99965 * 59.99854 * 4 2 1 7 7 N 1.31513 * 119.99936 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99992 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47260 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47136 * 120.00268 * 8 6 4 11 11 H 1.48500 * 109.47135 * 240.00151 * 8 6 4 12 12 N 1.46505 * 109.47024 * 119.99672 * 2 1 3 13 13 C 1.46504 * 119.99728 * 60.00371 * 12 2 1 14 14 C 1.34765 * 120.00180 * 240.00059 * 12 2 1 15 15 O 1.21593 * 120.00226 * 359.97438 * 14 12 2 16 16 N 1.34786 * 120.00204 * 180.02562 * 14 12 2 17 17 C 1.39973 * 119.99876 * 174.48572 * 16 14 12 18 18 C 1.39270 * 120.48683 * 327.41345 * 17 16 14 19 19 C 1.38511 * 118.35830 * 179.97438 * 18 17 16 20 20 C 1.38267 * 119.23620 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.53954 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.46953 * 90.00697 * 21 20 19 23 23 F 1.39909 * 109.47100 * 210.00342 * 21 20 19 24 24 F 1.39895 * 109.47737 * 330.00513 * 21 20 19 25 25 N 1.31856 * 120.91785 * 0.02562 * 20 19 18 26 26 C 1.31818 * 121.79354 * 359.72594 * 25 20 19 27 27 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47531 * 300.00171 * 1 2 3 29 29 H 1.09001 * 109.46902 * 60.00291 * 1 2 3 30 30 H 0.97003 * 120.00120 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.46867 * 269.99621 * 13 12 2 32 32 H 1.08998 * 109.47346 * 29.99649 * 13 12 2 33 33 H 1.09002 * 109.46987 * 150.00117 * 13 12 2 34 34 H 0.97000 * 119.99709 * 354.75768 * 16 14 12 35 35 H 1.08000 * 120.82279 * 359.97438 * 18 17 16 36 36 H 1.07998 * 120.37838 * 179.97438 * 19 18 17 37 37 H 1.08006 * 119.66541 * 180.26760 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 3.1476 -2.2864 -3.6037 10 1 1.1679 -1.5868 -4.8165 11 1 3.1474 -0.1859 -4.8160 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0873 1.1284 1.8907 16 7 3.2428 -0.6711 3.1837 17 6 4.1400 -0.0290 4.0451 18 6 5.0735 0.8761 3.5463 19 6 5.9397 1.4865 4.4382 20 6 5.8499 1.1805 5.7836 21 6 6.7894 1.8402 6.7600 22 9 6.2168 3.0276 7.2283 23 9 7.0229 0.9785 7.8372 24 9 8.0004 2.1268 6.1210 25 7 4.9544 0.3187 6.2240 26 6 4.1084 -0.2807 5.4101 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7095 1.1617 -3.4844 31 1 0.7376 -2.1444 1.9994 32 1 1.5295 -2.5969 0.4709 33 1 2.4629 -2.5819 1.9865 34 1 2.9477 -1.5748 3.3764 35 1 5.1209 1.0966 2.4901 36 1 6.6768 2.1934 4.0868 37 1 3.3859 -0.9777 5.8086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131558024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:12 Heat of formation + Delta-G solvation = -129.131301 kcal Electronic energy + Delta-G solvation = -26210.618647 eV Core-core repulsion = 21766.869195 eV Total energy + Delta-G solvation = -4443.749452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.24528 -47.79269 -47.68866 -40.98627 -39.48183 -36.01884 -34.95023 -33.06088 -32.46471 -31.05529 -29.25367 -26.62960 -26.06378 -25.33042 -24.02037 -23.03861 -21.36162 -19.60253 -18.80721 -18.62135 -18.59870 -18.06368 -17.19040 -16.42509 -16.29476 -15.40267 -15.27501 -14.86348 -14.65883 -14.54061 -14.43551 -14.16039 -14.04986 -13.89868 -13.86483 -13.64528 -13.35089 -13.13494 -12.86505 -12.68283 -12.13572 -11.80865 -11.69552 -11.17472 -11.11080 -10.92190 -10.78773 -10.40126 -10.28489 -10.09793 -9.96135 -9.52162 -9.28043 -8.55923 -8.53583 -7.79952 -6.18877 -4.27636 0.56994 1.02637 2.36793 2.79323 3.18265 3.19266 3.27427 3.29488 3.45925 3.64546 3.82275 4.16354 4.30598 4.32537 4.45948 4.62014 4.81158 4.92974 5.13029 5.30830 5.39802 5.62545 5.78088 5.90517 6.04944 6.13584 6.49876 6.60322 6.66531 6.83593 6.96777 7.26244 7.44411 7.52829 7.62340 7.90797 8.05736 8.37431 8.70909 8.91029 9.39465 10.86504 Molecular weight = 317.11amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.002764 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.394564 B =10127.811021 C =10504.233852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.597 5.597 13 C 0.080 3.920 14 C 0.694 3.306 15 O -0.575 6.575 16 N -0.688 5.688 17 C 0.171 3.829 18 C -0.083 4.083 19 C -0.095 4.095 20 C -0.004 4.004 21 C 0.528 3.472 22 F -0.173 7.173 23 F -0.168 7.168 24 F -0.174 7.174 25 N -0.423 5.423 26 C 0.068 3.932 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.264 0.736 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.409 0.591 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 -3.761 15.045 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.331 5.331 13 C -0.064 4.064 14 C 0.396 3.604 15 O -0.452 6.452 16 N -0.337 5.337 17 C 0.070 3.930 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.144 4.144 21 C 0.473 3.527 22 F -0.155 7.155 23 F -0.149 7.149 24 F -0.155 7.155 25 N -0.131 5.131 26 C -0.094 4.094 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.247 0.753 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.943 -2.993 15.522 17.265 hybrid contribution 0.196 -0.739 -1.531 1.712 sum 7.139 -3.732 13.990 16.144 Atomic orbital electron populations 1.22115 0.97994 0.99540 1.00997 1.18978 0.90846 0.94338 0.78680 0.91618 1.21327 1.32137 1.13226 0.90163 0.92116 1.24887 0.94838 0.94950 0.99013 1.69881 1.36125 1.22454 1.23873 0.86417 0.78632 0.79559 0.82639 1.19815 1.20874 1.20827 1.47689 1.50591 1.11575 1.23203 1.21623 0.98511 0.83214 1.03100 1.16021 0.79965 0.84933 0.79471 1.90906 1.62665 1.15112 1.76515 1.43067 1.46984 1.18813 1.24811 1.18804 0.89319 0.94479 0.90400 1.21816 0.91355 0.95513 1.02439 1.21748 0.99067 0.99022 0.91780 1.20692 1.00109 1.01462 0.92138 1.17803 0.78823 0.76550 0.79559 1.93232 1.84558 1.48350 1.89340 1.93214 1.94721 1.69768 1.57230 1.93197 1.46783 1.93759 1.81778 1.67045 1.02177 1.05111 1.38740 1.22476 0.98407 1.01166 0.87381 0.95051 0.96910 0.88618 0.92575 0.93472 0.89276 0.93322 0.75259 0.81863 0.83302 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.97 37.16 0.33 -2.99 16 2 C 0.27 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.07 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.42 7.99 -34.44 -0.28 -13.70 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.97 11.32 55.43 0.63 -23.34 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 N -0.60 -11.47 2.75 -181.00 -0.50 -11.96 16 13 C 0.08 1.14 9.15 59.85 0.55 1.69 16 14 C 0.69 12.98 8.04 -86.92 -0.70 12.29 16 15 O -0.57 -12.90 13.36 5.28 0.07 -12.83 16 16 N -0.69 -9.32 5.19 -14.13 -0.07 -9.39 16 17 C 0.17 2.27 6.31 -83.53 -0.53 1.74 16 18 C -0.08 -1.17 8.77 -39.10 -0.34 -1.51 16 19 C -0.10 -1.17 9.43 -39.47 -0.37 -1.54 16 20 C 0.00 -0.05 6.30 -82.57 -0.52 -0.57 16 21 C 0.53 6.34 3.43 36.00 0.12 6.46 16 22 F -0.17 -2.16 17.30 2.25 0.04 -2.12 16 23 F -0.17 -2.10 17.03 2.25 0.04 -2.06 16 24 F -0.17 -1.93 16.43 2.25 0.04 -1.90 16 25 N -0.42 -5.53 9.95 -9.31 -0.09 -5.63 16 26 C 0.07 0.79 11.12 -17.34 -0.19 0.60 16 27 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.40 7.02 -51.93 -0.36 1.03 16 33 H 0.05 0.52 6.44 -51.93 -0.33 0.19 16 34 H 0.41 4.11 6.63 -40.82 -0.27 3.83 16 35 H 0.16 2.59 6.48 -52.49 -0.34 2.25 16 36 H 0.15 1.49 7.59 -52.49 -0.40 1.09 16 37 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -29.86 326.43 -5.72 -35.58 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.57 Total: 3.33 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.20 Total: 10.35 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.04 Total: -50.32 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.86 -5.72 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131558024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.551 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds