Wall clock time and date at job start Tue Mar 31 2020 11:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34778 * 117.00024 * 2 1 4 4 O 1.21535 * 120.00333 * 0.02562 * 3 2 1 5 5 C 1.47275 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.36169 * 126.45899 * 180.02562 * 5 3 2 7 7 O 1.34234 * 106.94140 * 179.77892 * 6 5 3 8 8 C 1.34057 * 108.23761 * 0.36215 * 7 6 5 9 9 C 1.50700 * 125.36759 * 179.89494 * 8 7 6 10 10 O 1.42904 * 109.46889 * 269.69260 * 9 8 7 11 11 C 1.42903 * 113.99598 * 179.97438 * 10 9 8 12 12 H 1.08990 * 109.47387 * 30.00532 * 11 10 9 13 13 C 1.50707 * 109.47146 * 269.99936 * 11 10 9 14 14 H 1.07991 * 119.99782 * 125.48383 * 13 11 10 15 15 C 1.37873 * 119.99668 * 305.47812 * 13 11 10 16 16 N 1.31515 * 120.00666 * 8.50842 * 15 13 11 17 17 Si 1.86802 * 119.99740 * 188.49935 * 15 13 11 18 18 H 1.48500 * 109.47110 * 90.00215 * 17 15 13 19 19 H 1.48497 * 109.47400 * 210.00531 * 17 15 13 20 20 H 1.48508 * 109.47093 * 330.00406 * 17 15 13 21 21 C 1.50704 * 109.46703 * 150.00399 * 11 10 9 22 22 C 1.38234 * 119.99610 * 209.11448 * 21 11 10 23 23 C 1.38238 * 119.99966 * 179.78592 * 22 21 11 24 24 C 1.38241 * 119.99691 * 0.44187 * 23 22 21 25 25 C 1.38234 * 120.00053 * 359.81223 * 24 23 22 26 26 C 1.38233 * 120.00098 * 29.38752 * 21 11 10 27 27 N 1.29918 * 109.26653 * 359.62771 * 8 7 6 28 28 H 1.09001 * 109.46877 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47135 * 300.00551 * 1 2 3 30 30 H 1.08997 * 109.46951 * 59.99840 * 1 2 3 31 31 H 1.08005 * 126.53127 * 0.02562 * 6 5 3 32 32 H 1.08999 * 109.47222 * 149.69734 * 9 8 7 33 33 H 1.08997 * 109.47034 * 29.69117 * 9 8 7 34 34 H 0.97001 * 120.00231 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.00302 * 359.97438 * 22 21 11 36 36 H 1.07994 * 120.00382 * 180.27192 * 23 22 21 37 37 H 1.07998 * 119.99873 * 179.83179 * 24 23 22 38 38 H 1.08000 * 120.00058 * 179.97438 * 25 24 23 39 39 H 1.07997 * 119.99919 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4021 2.2202 0.0005 5 6 3.5347 1.2780 0.0006 6 6 4.2854 2.4140 0.0011 7 8 5.5723 2.0323 0.0065 8 6 5.6126 0.6924 0.0011 9 6 6.8671 -0.1426 0.0021 10 8 7.2644 -0.4070 -1.3449 11 6 8.4507 -1.1958 -1.4567 12 1 8.5259 -1.8628 -0.5980 13 6 9.6545 -0.2900 -1.4962 14 1 10.4602 -0.4316 -0.7912 15 6 9.7272 0.7194 -2.4325 16 7 8.6816 1.0005 -3.1791 17 14 11.3109 1.6880 -2.6406 18 1 12.1679 1.0234 -3.6550 19 1 10.9923 3.0674 -3.0889 20 1 12.0315 1.7432 -1.3433 21 6 8.3941 -2.0114 -2.7227 22 6 9.0425 -3.2304 -2.7892 23 6 8.9869 -3.9806 -3.9489 24 6 8.2904 -3.5075 -5.0453 25 6 7.6463 -2.2861 -4.9806 26 6 7.6984 -1.5379 -3.8194 27 7 4.3996 0.2271 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 3.9158 3.4288 0.0016 32 1 6.6762 -1.0846 0.5161 33 1 7.6624 0.3972 0.5162 34 1 8.7327 1.7110 -3.8376 35 1 9.5901 -3.5981 -1.9339 36 1 9.4898 -4.9349 -3.9994 37 1 8.2492 -4.0923 -5.9523 38 1 7.1025 -1.9163 -5.8373 39 1 7.1951 -0.5837 -3.7688 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224252996.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:00 Heat of formation + Delta-G solvation = -66.556420 kcal Electronic energy + Delta-G solvation = -25781.174110 eV Core-core repulsion = 21849.702098 eV Total energy + Delta-G solvation = -3931.472012 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.25940 -40.23269 -38.38055 -36.58923 -36.49567 -34.71305 -32.95941 -31.21581 -30.33792 -29.77493 -28.09794 -26.99933 -26.10086 -24.27216 -22.96060 -21.62556 -21.35312 -20.54593 -20.19359 -18.27685 -17.13201 -17.06408 -16.65473 -16.29219 -16.15748 -15.90722 -15.31000 -14.71453 -14.55452 -14.21979 -13.84527 -13.57278 -13.43423 -13.37108 -13.30269 -12.56731 -12.32057 -12.26409 -12.04988 -11.65353 -11.28853 -11.09140 -11.00959 -10.90439 -10.89989 -10.81537 -10.55842 -10.44668 -10.13103 -9.94225 -9.42571 -8.97902 -8.75194 -8.28710 -7.87933 -7.53362 -6.10743 -4.31193 1.00645 1.97010 2.38043 2.46721 2.49071 2.83764 3.09842 3.23115 3.30501 3.31990 3.99647 4.30484 4.70758 4.82932 4.87879 4.97409 5.05220 5.09923 5.27611 5.37002 5.55635 5.70311 5.74453 5.85695 5.88387 5.95918 6.00643 6.14020 6.27485 6.28951 6.48003 6.68437 6.77111 7.00505 7.15490 7.40888 7.49218 7.57976 7.71861 7.83740 7.86239 7.96294 8.12867 8.36794 8.82639 9.42004 10.86405 Molecular weight = 317.11amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.003910 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.835553 B = 7159.985582 C = 8558.529236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.562 3.438 4 O -0.510 6.510 5 C -0.070 4.070 6 C 0.026 3.974 7 O -0.177 6.177 8 C 0.237 3.763 9 C 0.160 3.840 10 O -0.352 6.352 11 C 0.247 3.753 12 H 0.025 0.975 13 C -0.558 4.558 14 H 0.064 0.936 15 C 0.089 3.911 16 N -0.835 5.835 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.033 4.033 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.065 4.065 27 N -0.442 5.442 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 -1.619 4.805 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.251 6.251 3 C 0.406 3.594 4 O -0.399 6.399 5 C -0.189 4.189 6 C -0.049 4.049 7 O -0.062 6.062 8 C 0.027 3.973 9 C 0.082 3.918 10 O -0.271 6.271 11 C 0.192 3.808 12 H 0.043 0.957 13 C -0.595 4.595 14 H 0.082 0.918 15 C -0.119 4.119 16 N -0.469 5.469 17 Si 0.713 3.287 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.034 4.034 22 C -0.146 4.146 23 C -0.158 4.158 24 C -0.167 4.167 25 C -0.161 4.161 26 C -0.083 4.083 27 N -0.172 5.172 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.726 -1.803 4.492 10.864 hybrid contribution 1.008 1.366 -0.267 1.719 sum -8.718 -0.437 4.225 9.697 Atomic orbital electron populations 1.23329 0.76048 1.03942 1.02514 1.86701 1.23195 1.31614 1.83545 1.19456 0.86227 0.81678 0.72004 1.90866 1.65803 1.36031 1.47176 1.20509 0.92269 0.90533 1.15539 1.25232 0.80194 1.00523 0.98972 1.84524 1.27776 1.26275 1.67632 1.26486 0.95771 0.77716 0.97316 1.20352 0.86741 0.94598 0.90129 1.88155 1.45757 1.73958 1.19222 1.18622 0.83484 0.88515 0.90211 0.95707 1.21367 1.04407 1.15389 1.18294 0.91793 1.24953 0.95692 0.96370 0.94926 1.70000 1.27709 1.28374 1.20783 0.86710 0.84022 0.79278 0.78699 1.20446 1.21095 1.19740 1.20058 0.94112 0.91835 0.97375 1.20779 1.00981 0.95037 0.97808 1.20779 1.01478 0.99539 0.94048 1.20832 1.00793 0.97130 0.97906 1.21135 1.01199 0.95380 0.98418 1.21453 0.96797 0.99018 0.91051 1.70913 0.99112 1.30174 1.17026 0.87814 0.91826 0.91752 0.75385 0.90559 0.90458 0.92832 0.87346 0.87690 0.87988 0.87819 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.34 -4.86 10.58 -40.70 -0.43 -5.29 16 3 C 0.56 8.74 7.96 34.40 0.27 9.02 16 4 O -0.51 -8.07 16.68 -19.29 -0.32 -8.40 16 5 C -0.07 -1.17 7.04 -83.04 -0.58 -1.75 16 6 C 0.03 0.38 11.95 29.99 0.36 0.74 16 7 O -0.18 -3.07 10.72 6.55 0.07 -3.00 16 8 C 0.24 4.40 7.93 -13.09 -0.10 4.30 16 9 C 0.16 3.02 6.36 36.01 0.23 3.25 16 10 O -0.35 -8.14 7.80 -35.23 -0.27 -8.41 16 11 C 0.25 5.71 2.56 -29.03 -0.07 5.64 16 12 H 0.03 0.53 7.74 -51.93 -0.40 0.13 16 13 C -0.56 -13.99 8.85 -34.44 -0.30 -14.29 16 14 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 15 C 0.09 2.28 5.22 -17.82 -0.09 2.19 16 16 N -0.84 -21.90 9.54 55.43 0.53 -21.37 16 17 Si 0.89 20.08 29.55 -169.99 -5.02 15.06 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 21 C -0.03 -0.76 4.83 -104.62 -0.50 -1.26 16 22 C -0.13 -2.61 9.71 -39.58 -0.38 -2.99 16 23 C -0.14 -2.60 10.05 -39.58 -0.40 -3.00 16 24 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 25 C -0.14 -2.92 10.05 -39.58 -0.40 -3.31 16 26 C -0.06 -1.50 8.08 -39.58 -0.32 -1.82 16 27 N -0.44 -8.25 11.36 -7.67 -0.09 -8.34 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.23 2.31 8.06 -52.48 -0.42 1.89 16 32 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.11 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.15 3.74 5.98 -52.49 -0.31 3.42 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -30.17 349.52 -6.39 -36.56 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.49 Total: 2.97 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.63 Total: -5.05 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.44 Total: -29.71 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.96 Total: -25.10 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.17 -6.39 -36.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224252996.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.994 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds