Wall clock time and date at job start Tue Mar 31 2020 11:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34774 * 116.99772 * 2 1 4 4 O 1.21530 * 120.00480 * 0.02562 * 3 2 1 5 5 C 1.47273 * 119.99724 * 179.97438 * 3 2 1 6 6 C 1.36180 * 126.45974 * 179.71072 * 5 3 2 7 7 O 1.34232 * 106.94112 * 179.90343 * 6 5 3 8 8 C 1.34054 * 108.23898 * 0.36883 * 7 6 5 9 9 C 1.50708 * 125.36635 * 179.74863 * 8 7 6 10 10 O 1.42897 * 109.46855 * 270.02497 * 9 8 7 11 11 C 1.42896 * 113.99929 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47419 * 329.99704 * 11 10 9 13 13 C 1.50707 * 109.47289 * 89.99810 * 11 10 9 14 14 H 1.08000 * 119.99739 * 240.00109 * 13 11 10 15 15 C 1.37876 * 119.99811 * 60.00030 * 13 11 10 16 16 N 1.31505 * 120.00209 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99543 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47203 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47158 * 119.99920 * 17 15 13 20 20 H 1.48505 * 109.46872 * 240.00040 * 17 15 13 21 21 C 1.50707 * 109.47384 * 209.99811 * 11 10 9 22 22 C 1.38232 * 119.99647 * 324.72374 * 21 11 10 23 23 C 1.38239 * 119.99905 * 179.78800 * 22 21 11 24 24 C 1.38229 * 119.99798 * 0.43935 * 23 22 21 25 25 C 1.38239 * 120.00178 * 359.81508 * 24 23 22 26 26 C 1.38232 * 120.00125 * 145.00106 * 21 11 10 27 27 N 1.29918 * 109.26649 * 359.76583 * 8 7 6 28 28 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47070 * 300.00003 * 1 2 3 30 30 H 1.09001 * 109.46626 * 60.00020 * 1 2 3 31 31 H 1.08001 * 126.52573 * 0.04053 * 6 5 3 32 32 H 1.09002 * 109.46819 * 30.01925 * 9 8 7 33 33 H 1.08994 * 109.46823 * 150.02105 * 9 8 7 34 34 H 0.97004 * 120.00205 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.00197 * 0.02562 * 22 21 11 36 36 H 1.07997 * 120.00105 * 180.27670 * 23 22 21 37 37 H 1.07998 * 120.00212 * 179.83104 * 24 23 22 38 38 H 1.08002 * 120.00225 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.00126 * 359.97417 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4020 2.2201 0.0005 5 6 3.5346 1.2779 0.0006 6 6 4.2854 2.4140 -0.0049 7 8 5.5723 2.0324 0.0001 8 6 5.6126 0.6924 0.0003 9 6 6.8672 -0.1426 -0.0002 10 8 7.2633 -0.4061 -1.3476 11 6 8.4488 -1.1958 -1.4610 12 1 9.0939 -1.0083 -0.6026 13 6 8.0779 -2.6560 -1.5011 14 1 8.4506 -3.3288 -0.7429 15 6 7.2628 -3.1328 -2.5056 16 7 6.8094 -2.3136 -3.4291 17 14 6.8025 -4.9426 -2.5549 18 1 7.4376 -5.6462 -1.4117 19 1 5.3268 -5.0806 -2.4636 20 1 7.2777 -5.5397 -3.8288 21 6 9.1784 -0.8280 -2.7273 22 6 8.4655 -0.4851 -3.8609 23 6 9.1347 -0.1434 -5.0213 24 6 10.5166 -0.1534 -5.0506 25 6 11.2295 -0.5014 -3.9185 26 6 10.5604 -0.8390 -2.7569 27 7 4.3996 0.2271 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 3.9158 3.4288 -0.0098 32 1 7.6629 0.3970 0.5135 33 1 6.6767 -1.0848 0.5135 34 1 6.2355 -2.6491 -4.1356 35 1 7.3857 -0.4804 -3.8389 36 1 8.5778 0.1288 -5.9056 37 1 11.0395 0.1109 -5.9578 38 1 12.3093 -0.5096 -3.9415 39 1 11.1173 -1.1108 -1.8725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224252997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:02 Heat of formation + Delta-G solvation = -61.836248 kcal Electronic energy + Delta-G solvation = -25829.984592 eV Core-core repulsion = 21898.717262 eV Total energy + Delta-G solvation = -3931.267330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.30385 -40.21588 -38.33546 -36.58580 -36.48447 -34.74829 -33.04073 -31.21152 -30.28151 -29.63239 -28.07625 -27.03855 -26.13605 -24.29194 -22.91124 -21.60401 -21.32004 -20.55755 -20.18151 -18.28975 -17.13912 -17.10046 -16.66236 -16.31184 -16.13495 -15.90856 -15.29800 -14.73895 -14.51848 -14.30536 -13.78145 -13.55764 -13.41984 -13.38783 -13.29504 -12.53978 -12.25193 -12.13436 -12.10777 -11.54075 -11.31289 -11.11454 -10.97422 -10.89274 -10.86638 -10.81978 -10.50899 -10.39982 -10.13999 -9.85033 -9.38329 -9.00811 -8.76178 -8.31315 -7.78318 -7.47450 -5.99319 -4.34007 0.97042 1.95811 2.44936 2.47742 2.60948 2.78093 3.10524 3.25575 3.34059 3.35400 3.98794 4.32204 4.68318 4.81150 4.96378 5.01062 5.08939 5.09065 5.30468 5.40604 5.49739 5.65270 5.76308 5.80602 5.93419 6.02758 6.07025 6.14616 6.26616 6.31823 6.51585 6.73692 6.85835 7.08291 7.26599 7.48230 7.49824 7.60831 7.79713 7.84383 7.96705 8.01209 8.28155 8.37250 8.81602 9.42538 10.84772 Molecular weight = 317.11amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.003969 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.717632 B = 7052.453521 C = 8208.161452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.561 3.439 4 O -0.511 6.511 5 C -0.067 4.067 6 C 0.022 3.978 7 O -0.187 6.187 8 C 0.229 3.771 9 C 0.162 3.838 10 O -0.363 6.363 11 C 0.247 3.753 12 H 0.024 0.976 13 C -0.548 4.548 14 H 0.064 0.936 15 C 0.087 3.913 16 N -0.842 5.842 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.283 1.283 21 C -0.042 4.042 22 C -0.044 4.044 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.128 4.128 27 N -0.428 5.428 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.231 0.769 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.263 0.737 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 7.146 5.273 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.248 6.248 3 C 0.406 3.594 4 O -0.400 6.400 5 C -0.185 4.185 6 C -0.053 4.053 7 O -0.073 6.073 8 C 0.020 3.980 9 C 0.083 3.917 10 O -0.282 6.282 11 C 0.192 3.808 12 H 0.042 0.958 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.120 4.120 16 N -0.477 5.477 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.043 4.043 22 C -0.063 4.063 23 C -0.172 4.172 24 C -0.163 4.163 25 C -0.168 4.168 26 C -0.146 4.146 27 N -0.158 5.158 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.181 0.819 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.758 6.823 4.948 9.678 hybrid contribution -0.250 -0.480 -0.185 0.572 sum -5.009 6.343 4.764 9.381 Atomic orbital electron populations 1.23337 0.76010 1.04012 1.02457 1.86723 1.23221 1.31496 1.83373 1.19454 0.86239 0.81717 0.71978 1.90859 1.65814 1.36041 1.47273 1.20582 0.92441 0.90503 1.15005 1.25195 0.80087 1.00490 0.99499 1.84465 1.28088 1.26444 1.68305 1.26556 0.96142 0.77355 0.97980 1.20378 0.86244 0.95050 0.90012 1.88132 1.47230 1.73267 1.19584 1.18655 0.81884 0.89858 0.90437 0.95774 1.21447 1.31561 0.93186 1.12212 0.91742 1.24983 0.94752 0.97759 0.94473 1.69807 1.30991 1.33883 1.12982 0.86544 0.78555 0.84885 0.78086 1.19620 1.20581 1.20895 1.19909 0.92039 0.95097 0.97246 1.21873 1.03039 0.91030 0.90351 1.21157 0.93937 1.03354 0.98778 1.20829 0.94618 1.03461 0.97418 1.20703 0.98229 1.04045 0.93863 1.20773 0.94178 1.02058 0.97604 1.70974 0.99106 1.29882 1.15792 0.87783 0.91822 0.91744 0.75292 0.91961 0.88880 0.92679 0.81928 0.88058 0.88270 0.87957 0.87690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.33 -5.16 10.58 -40.69 -0.43 -5.59 16 3 C 0.56 8.99 7.96 34.40 0.27 9.27 16 4 O -0.51 -8.16 16.68 -19.29 -0.32 -8.48 16 5 C -0.07 -1.12 7.04 -83.04 -0.58 -1.71 16 6 C 0.02 0.31 11.95 29.99 0.36 0.66 16 7 O -0.19 -2.96 10.72 6.57 0.07 -2.89 16 8 C 0.23 4.19 7.93 -13.08 -0.10 4.08 16 9 C 0.16 2.99 6.36 36.01 0.23 3.22 16 10 O -0.36 -8.34 8.52 -35.23 -0.30 -8.64 16 11 C 0.25 5.72 2.59 -29.03 -0.08 5.64 16 12 H 0.02 0.51 7.70 -51.93 -0.40 0.11 16 13 C -0.55 -13.91 8.89 -34.44 -0.31 -14.22 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.09 2.27 5.24 -17.82 -0.09 2.17 16 16 N -0.84 -22.30 8.50 55.43 0.47 -21.83 16 17 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.04 -0.98 4.80 -104.62 -0.50 -1.48 16 22 C -0.04 -1.03 7.46 -39.58 -0.30 -1.33 16 23 C -0.15 -3.20 10.05 -39.58 -0.40 -3.60 16 24 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 25 C -0.15 -2.84 10.05 -39.58 -0.40 -3.24 16 26 C -0.13 -2.64 9.68 -39.58 -0.38 -3.02 16 27 N -0.43 -8.32 11.36 -7.67 -0.09 -8.41 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.23 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.16 4.18 5.50 -52.48 -0.29 3.90 16 36 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -30.63 348.07 -6.44 -37.07 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.46 Total: 3.25 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.61 Total: -5.26 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.38 Total: -30.23 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.98 Total: -25.61 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.63 -6.44 -37.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224252997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.769 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds