Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38390 * 119.85527 * 2 1 4 4 C 1.37929 * 120.14588 * 179.76633 * 3 2 1 5 5 C 1.39595 * 119.85335 * 0.50664 * 4 3 2 6 6 C 1.47849 * 120.14500 * 179.76755 * 5 4 3 7 7 O 1.21552 * 120.00101 * 141.27332 * 6 5 4 8 8 N 1.34781 * 119.99882 * 321.27018 * 6 5 4 9 9 C 1.46500 * 119.99916 * 177.14141 * 8 6 5 10 10 C 1.50694 * 109.47379 * 89.99836 * 9 8 6 11 11 H 1.08007 * 120.00158 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00400 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99485 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00420 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47122 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47422 * 119.99804 * 14 12 10 17 17 H 1.48497 * 109.47453 * 239.99946 * 14 12 10 18 18 C 1.46504 * 120.00098 * 357.13724 * 8 6 5 19 19 C 1.53000 * 109.46894 * 104.83776 * 18 8 6 20 20 C 1.47195 * 109.47319 * 185.24681 * 19 18 8 21 21 N 6.03051 * 116.68928 * 335.05629 * 2 1 3 22 22 C 1.39556 * 119.71446 * 359.75219 * 5 4 3 23 23 C 1.37980 * 119.84963 * 359.97438 * 22 5 4 24 24 N 1.48009 * 119.92732 * 179.97438 * 23 22 5 25 25 O 1.21798 * 120.00307 * 2.20000 * 24 23 22 26 26 O 1.21804 * 120.00178 * 182.20345 * 24 23 22 27 27 H 1.09001 * 109.46992 * 263.60824 * 1 2 3 28 28 H 1.08997 * 109.47063 * 143.60807 * 1 2 3 29 29 H 1.09001 * 109.47513 * 23.60645 * 1 2 3 30 30 H 1.07995 * 119.92150 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.07360 * 180.23284 * 4 3 2 32 32 H 1.08996 * 109.46843 * 209.99883 * 9 8 6 33 33 H 1.08999 * 109.46936 * 329.99944 * 9 8 6 34 34 H 0.97000 * 119.99870 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.47171 * 224.83717 * 18 8 6 36 36 H 1.08999 * 109.46757 * 344.84071 * 18 8 6 37 37 H 1.09000 * 109.47354 * 305.25081 * 19 18 8 38 38 H 1.08997 * 109.46986 * 65.24457 * 19 18 8 39 39 H 1.07999 * 120.07613 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5751 1.2072 0.0049 5 6 4.2762 0.0001 -0.0009 6 6 5.7547 0.0001 -0.0009 7 8 6.3625 -0.8243 0.6537 8 7 6.4285 0.9142 -0.7269 9 6 7.8922 0.9541 -0.6779 10 6 8.4554 0.0576 -1.7502 11 1 7.7897 -0.4872 -2.4033 12 6 9.8206 -0.0664 -1.8983 13 7 10.6312 0.5982 -1.1040 14 14 10.5188 -1.1772 -3.2279 15 1 9.4052 -1.8064 -3.9825 16 1 11.3533 -0.3733 -4.1568 17 1 11.3529 -2.2345 -2.6022 18 6 5.6974 1.8677 -1.5651 19 6 5.7023 3.2434 -0.8956 20 6 4.8632 4.1702 -1.6725 21 7 4.2156 4.8854 -2.2723 22 6 3.5754 -1.2068 -0.0063 23 6 2.1956 -1.1998 -0.0054 24 7 1.4507 -2.4787 -0.0118 25 8 2.0550 -3.5357 0.0227 26 8 0.2334 -2.4743 -0.0515 27 1 -0.3633 -0.1144 1.0213 28 1 -0.3633 -0.8272 -0.6097 29 1 -0.3634 0.9416 -0.4115 30 1 1.6523 2.1334 0.0004 31 1 4.1116 2.1446 0.0087 32 1 8.2334 1.9761 -0.8425 33 1 8.2325 0.6104 0.2989 34 1 11.5916 0.5107 -1.2079 35 1 6.1780 1.9367 -2.5408 36 1 4.6692 1.5279 -1.6896 37 1 5.3067 3.1565 0.1164 38 1 6.7228 3.6242 -0.8552 39 1 4.1119 -2.1441 -0.0104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033628021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = 32.491094 kcal Electronic energy + Delta-G solvation = -26028.493104 eV Core-core repulsion = 22133.608865 eV Total energy + Delta-G solvation = -3894.884238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37979 -40.57741 -38.63652 -37.17465 -36.76116 -35.60898 -33.59723 -32.78320 -32.15180 -31.13276 -28.63626 -27.49232 -26.12920 -24.32526 -23.61838 -22.90579 -22.20351 -20.06661 -18.78491 -18.39581 -17.94153 -17.67578 -16.85075 -16.57763 -16.42081 -15.90742 -15.40875 -14.92706 -14.59563 -14.55349 -14.26243 -14.11295 -13.72101 -13.28887 -13.02864 -12.90052 -12.72835 -12.69278 -12.28579 -12.08793 -12.02766 -11.91358 -11.45578 -11.41026 -11.22354 -11.20833 -11.02515 -10.77206 -10.72799 -10.31267 -9.87069 -9.81205 -9.53796 -9.25030 -8.58232 -8.11398 -6.20457 -4.25527 -0.33066 0.47032 1.15143 1.25976 2.51309 2.61172 2.69623 3.17813 3.22215 3.31350 3.35857 3.42911 3.84395 4.06314 4.13859 4.30343 4.34968 4.50429 4.57919 4.75485 4.86844 4.88278 5.05365 5.15742 5.17768 5.24436 5.28801 5.41377 5.59930 5.65329 5.69637 5.75918 5.87272 5.93879 6.39832 6.69020 7.11023 7.20946 7.37410 7.56597 7.74906 7.92698 8.02121 8.52024 8.79194 9.40865 10.87792 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.011732 B = 0.004226 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.067407 B = 6623.407867 C = 8382.886980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.002 4.002 3 C -0.130 4.130 4 C -0.051 4.051 5 C -0.122 4.122 6 C 0.550 3.450 7 O -0.512 6.512 8 N -0.585 5.585 9 C 0.244 3.756 10 C -0.532 4.532 11 H 0.060 0.940 12 C 0.065 3.935 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.103 3.897 19 C -0.057 4.057 20 C 0.212 3.788 21 N -0.435 5.435 22 C -0.001 4.001 23 C -0.055 4.055 24 N 0.035 4.965 25 O -0.158 6.158 26 O -0.164 6.164 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 4.706 2.658 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 C -0.149 4.149 4 C -0.069 4.069 5 C -0.126 4.126 6 C 0.335 3.665 7 O -0.388 6.388 8 N -0.315 5.315 9 C 0.126 3.874 10 C -0.571 4.571 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.023 4.023 19 C -0.098 4.098 20 C -0.107 4.107 21 N -0.112 5.112 22 C -0.021 4.021 23 C -0.139 4.139 24 N 0.552 4.448 25 O -0.374 6.374 26 O -0.376 6.376 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.645 5.970 2.150 17.814 hybrid contribution 0.678 -1.107 -0.510 1.395 sum -15.967 4.863 1.639 16.772 Atomic orbital electron populations 1.21481 0.88413 1.05237 1.04738 1.20033 0.98159 0.90428 0.91763 1.21093 0.93808 0.97285 1.02672 1.22323 0.94568 0.98897 0.91158 1.20228 0.95678 0.92488 1.04185 1.17887 0.85122 0.82394 0.81106 1.90842 1.68794 1.36772 1.42395 1.48156 1.09835 1.30765 1.42780 1.19468 0.70686 0.97975 0.99268 1.21402 0.91710 1.27528 1.16468 0.92192 1.24900 0.96831 0.95731 0.96336 1.69916 1.03621 1.41627 1.37885 0.86447 0.79101 0.80513 0.81421 1.19742 1.20913 1.20754 1.21647 0.98264 0.86398 0.95958 1.19999 0.99846 0.92353 0.97632 1.29002 0.93693 0.94017 0.93955 1.81238 1.10512 1.10171 1.09277 1.21073 0.90589 1.00580 0.89858 1.20802 0.92132 0.83499 1.17461 1.43525 1.01062 1.02758 0.97451 1.94589 1.70371 1.19150 1.53323 1.94407 0.95866 1.93710 1.53648 0.89419 0.87354 0.90645 0.83204 0.82806 0.94160 0.93219 0.92571 0.88441 0.89962 0.87109 0.85446 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.86 36.00 0.32 -0.78 16 2 C 0.00 -0.02 5.89 -104.53 -0.62 -0.64 16 3 C -0.13 -1.06 9.65 -39.64 -0.38 -1.44 16 4 C -0.05 -0.49 7.39 -39.19 -0.29 -0.78 16 5 C -0.12 -1.61 5.15 -104.97 -0.54 -2.15 16 6 C 0.55 9.61 7.34 -12.33 -0.09 9.52 16 7 O -0.51 -11.37 16.51 5.32 0.09 -11.28 16 8 N -0.58 -9.79 2.49 -176.18 -0.44 -10.23 16 9 C 0.24 5.33 5.09 -5.20 -0.03 5.30 16 10 C -0.53 -13.49 9.39 -34.44 -0.32 -13.82 16 11 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 14 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.10 1.22 4.83 -4.04 -0.02 1.20 16 19 C -0.06 -0.50 4.96 -29.52 -0.15 -0.65 16 20 C 0.21 2.15 15.41 -20.76 -0.32 1.83 16 21 N -0.43 -5.54 18.54 42.15 0.78 -4.76 16 22 C 0.00 -0.02 9.14 -39.18 -0.36 -0.37 16 23 C -0.06 -0.69 6.84 -80.01 -0.55 -1.24 16 24 N 0.04 0.49 4.45 33.93 0.15 0.64 16 25 O -0.16 -2.45 18.44 -29.46 -0.54 -2.99 16 26 O -0.16 -2.16 15.22 -29.46 -0.45 -2.61 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 0.96 5.49 -51.93 -0.29 0.67 16 29 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 30 H 0.15 0.78 8.05 -52.49 -0.42 0.36 16 31 H 0.15 1.17 3.49 -52.48 -0.18 0.99 16 32 H 0.04 0.85 7.43 -51.93 -0.39 0.46 16 33 H 0.05 1.25 7.46 -51.93 -0.39 0.86 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 0.84 4.90 -51.93 -0.25 0.58 16 37 H 0.11 0.73 6.24 -51.93 -0.32 0.41 16 38 H 0.13 1.12 7.56 -51.93 -0.39 0.73 16 39 H 0.16 2.38 7.60 -52.49 -0.40 1.99 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -31.92 343.87 -6.79 -38.71 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.84 Total: -2.21 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.44 Total: -2.42 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 1.23 Total: -37.94 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.90 Total: -16.89 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.92 -6.79 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033628021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.206 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds