Wall clock time and date at job start Tue Mar 31 2020 11:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21582 * 119.99734 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99612 * 180.02562 * 17 16 15 20 20 C 1.46503 * 119.99863 * 180.02562 * 19 17 16 21 21 C 1.50694 * 109.47386 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.80586 * 94.70696 * 21 20 19 23 23 C 1.35449 * 103.99041 * 179.89312 * 22 21 20 24 24 O 1.34040 * 106.44146 * 0.36642 * 23 22 21 25 25 N 1.20915 * 111.57202 * 359.75578 * 24 23 22 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 34 34 H 0.96999 * 120.00705 * 359.97438 * 19 17 16 35 35 H 1.08998 * 109.46820 * 299.99754 * 20 19 17 36 36 H 1.08998 * 109.47071 * 59.99317 * 20 19 17 37 37 H 1.08009 * 128.00037 * 0.02562 * 22 21 20 38 38 H 1.08004 * 126.77778 * 180.10384 * 23 22 21 39 39 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5973 -0.0070 19 7 0.4556 -9.5060 -2.2216 20 6 -0.2029 -10.8071 -2.3620 21 6 -0.3168 -11.1575 -3.8232 22 6 0.5812 -11.9472 -4.5773 23 6 0.0392 -11.9644 -5.8185 24 8 -1.0780 -11.2266 -5.7549 25 7 -1.2585 -10.7882 -4.6426 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 1.5547 -7.3009 -1.6561 34 1 0.7394 -9.0185 -3.0107 35 1 0.3850 -11.5690 -1.8501 36 1 -1.1987 -10.7598 -1.9213 37 1 1.4882 -12.4275 -4.2409 38 1 0.4322 -12.4691 -6.6888 39 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083227321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:33 Heat of formation + Delta-G solvation = 35.897330 kcal Electronic energy + Delta-G solvation = -24309.611102 eV Core-core repulsion = 20414.874569 eV Total energy + Delta-G solvation = -3894.736533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.41287 -40.04668 -39.08537 -36.93337 -35.98093 -34.44709 -33.59533 -32.34335 -32.09389 -30.77307 -29.17849 -27.67261 -25.70164 -24.90646 -23.58616 -21.75882 -21.62943 -21.04330 -20.79982 -18.90113 -18.21141 -17.93850 -17.57768 -17.04456 -16.32388 -15.81974 -15.37145 -15.12449 -14.70084 -14.51967 -14.46093 -14.23226 -13.99517 -13.61848 -13.54015 -13.29356 -12.92559 -12.66306 -12.39909 -12.15468 -11.76437 -11.67058 -11.38310 -10.93985 -10.86893 -10.83304 -10.71691 -10.50211 -10.24296 -10.09404 -9.42775 -9.40665 -8.89833 -8.83027 -8.26515 -7.34062 -6.49649 -4.09376 1.03848 1.57507 1.90269 2.25793 2.80069 2.92637 3.09927 3.11417 3.14126 3.18835 3.65267 3.91995 4.08428 4.24105 4.55316 4.68076 4.87940 4.91380 4.94973 5.06202 5.26145 5.30432 5.37552 5.53093 5.54145 5.75833 5.83986 5.91238 6.06405 6.18890 6.24328 6.51937 6.54530 6.80854 6.83166 6.98944 7.18193 7.26156 7.34743 7.69787 7.79778 7.94080 7.96140 8.55299 8.95408 9.64036 10.67995 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.002175 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.098371 B =12870.258782 C =13642.313916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.073 4.073 15 C 0.187 3.813 16 N -0.734 5.734 17 C 0.707 3.293 18 O -0.593 6.593 19 N -0.746 5.746 20 C 0.222 3.778 21 C -0.006 4.006 22 C -0.220 4.220 23 C -0.060 4.060 24 O 0.108 5.892 25 N -0.345 5.345 26 C -0.170 4.170 27 H 0.271 0.729 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.398 0.602 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.175 0.825 38 H 0.219 0.781 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -21.229 -9.974 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.074 4.074 15 C 0.064 3.936 16 N -0.389 5.389 17 C 0.407 3.593 18 O -0.471 6.471 19 N -0.403 5.403 20 C 0.097 3.903 21 C -0.165 4.165 22 C -0.242 4.242 23 C -0.141 4.141 24 O 0.038 5.962 25 N -0.046 5.046 26 C -0.190 4.190 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.233 0.767 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.192 0.808 38 H 0.235 0.765 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.768 -20.817 -8.884 22.802 hybrid contribution 1.668 0.844 -0.743 2.011 sum 4.436 -19.973 -9.627 22.612 Atomic orbital electron populations 1.70030 1.05977 1.27896 1.45626 1.25303 0.95853 0.98874 0.96451 0.85774 0.78709 0.79719 0.79194 1.19497 1.20237 1.19455 1.21274 0.91761 0.80776 1.53203 0.89088 1.83983 1.34264 1.11392 1.78264 1.19330 0.90269 0.88081 0.92731 1.21245 0.93836 0.99113 1.10278 1.20744 0.98558 0.92272 0.97936 1.20480 0.93340 0.97097 1.10464 1.19274 0.93475 0.92831 1.01797 1.20019 1.00009 0.90989 0.82627 1.45248 1.63845 1.19678 1.10109 1.15843 0.78863 0.81437 0.83183 1.90926 1.57608 1.61913 1.36687 1.44997 1.65945 1.22046 1.07351 1.19224 0.99438 0.85122 0.86513 1.23669 0.93346 1.00863 0.98602 1.22809 1.03419 1.04865 0.93124 1.26101 0.88638 0.98339 1.00999 1.84886 1.37025 1.48935 1.25373 1.73959 1.22344 1.17079 0.91222 1.20102 0.99486 0.89845 1.09581 0.91877 0.85478 0.87295 0.87485 0.91006 0.90930 0.76664 0.76830 0.89131 0.89742 0.80761 0.76451 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 8 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 9 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 10 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 11 C -0.23 -4.68 9.17 -39.39 -0.36 -5.04 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.14 9.70 -39.54 -0.38 -3.52 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 15 C 0.19 2.76 5.80 -5.19 -0.03 2.73 16 16 N -0.73 -9.74 5.55 -66.42 -0.37 -10.11 16 17 C 0.71 9.88 8.57 -86.92 -0.74 9.14 16 18 O -0.59 -10.41 16.34 5.29 0.09 -10.33 16 19 N -0.75 -7.97 5.55 -66.42 -0.37 -8.34 16 20 C 0.22 2.16 6.26 -5.20 -0.03 2.13 16 21 C -0.01 -0.05 6.70 -82.10 -0.55 -0.60 16 22 C -0.22 -1.29 11.12 -39.38 -0.44 -1.73 16 23 C -0.06 -0.28 12.30 29.74 0.37 0.09 16 24 O 0.11 0.89 11.20 17.18 0.19 1.08 16 25 N -0.35 -3.59 12.07 33.42 0.40 -3.19 16 26 C -0.17 -3.45 9.65 -39.40 -0.38 -3.83 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 29 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.40 4.70 8.48 -40.82 -0.35 4.35 16 34 H 0.40 3.57 8.48 -40.82 -0.35 3.23 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.22 0.05 8.06 -52.48 -0.42 -0.38 16 39 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 350.04 15.07 5.27 5.27 Total: -1.00 -33.98 350.04 -6.80 -40.78 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.20 Total: 9.23 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -3.56 Total: -10.41 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.42 Total: -45.89 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.28 Total: -14.15 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.98 -6.80 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083227321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.681 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds