Wall clock time and date at job start Tue Mar 31 2020 11:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00171 * 2 1 4 4 H 1.48494 * 109.47469 * 240.00388 * 3 2 1 5 5 H 1.48493 * 109.47413 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47099 * 120.00161 * 3 2 1 7 7 C 1.37878 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99598 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00390 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47549 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00475 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47241 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47166 * 65.00075 * 12 11 10 14 14 C 1.34738 * 116.99855 * 180.02562 * 13 12 11 15 15 O 1.21490 * 120.00249 * 359.97438 * 14 13 12 16 16 C 1.47558 * 119.99653 * 179.97438 * 14 13 12 17 17 C 1.39752 * 120.08003 * 179.97438 * 16 14 13 18 18 C 1.37726 * 119.91041 * 179.70134 * 17 16 14 19 19 C 1.39034 * 120.08739 * 0.27764 * 18 17 16 20 20 N 1.39916 * 119.91944 * 180.02562 * 19 18 17 21 21 C 1.36313 * 126.86949 * 180.02562 * 20 19 18 22 22 C 1.34963 * 106.78061 * 179.97438 * 21 20 19 23 23 N 1.33380 * 109.01662 * 359.97438 * 22 21 20 24 24 N 1.28769 * 109.92470 * 359.75089 * 23 22 21 25 25 C 1.39047 * 120.17069 * 0.02562 * 19 18 17 26 26 C 1.37722 * 120.07943 * 359.97438 * 25 19 18 27 27 H 0.97006 * 119.99846 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46761 * 60.00686 * 9 7 2 29 29 H 1.09002 * 109.47503 * 300.00621 * 9 7 2 30 30 H 1.09001 * 109.47116 * 59.99883 * 11 10 9 31 31 H 1.08997 * 109.47199 * 300.00163 * 11 10 9 32 32 H 1.08999 * 109.47094 * 304.99747 * 12 11 10 33 33 H 1.09006 * 109.47177 * 185.00292 * 12 11 10 34 34 H 1.08002 * 120.04795 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.95650 * 180.30823 * 18 17 16 36 36 H 1.07995 * 126.61154 * 359.93557 * 21 20 19 37 37 H 1.08001 * 125.49327 * 179.97438 * 22 21 20 38 38 H 1.07996 * 119.95727 * 179.97438 * 25 19 18 39 39 H 1.08005 * 120.03999 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6478 -5.9562 -0.0017 13 8 3.3992 -5.8892 1.2390 14 6 4.3977 -6.7798 1.3982 15 8 4.6338 -7.5903 0.5246 16 6 5.2044 -6.7705 2.6337 17 6 6.2401 -7.6937 2.8010 18 6 6.9948 -7.6779 3.9529 19 6 6.7237 -6.7489 4.9511 20 7 7.4930 -6.7357 6.1197 21 6 7.3520 -5.8935 7.1823 22 6 8.2997 -6.2366 8.0799 23 7 9.0077 -7.2579 7.5955 24 7 8.5597 -7.5912 6.4351 25 6 5.6900 -5.8328 4.7911 26 6 4.9309 -5.8424 3.6421 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8896 30 1 0.9451 -4.9822 -0.8913 31 1 0.9445 -4.9828 0.8886 32 1 3.3213 -5.7953 -0.8435 33 1 2.1818 -6.9375 -0.0918 34 1 6.4513 -8.4158 2.0260 35 1 7.7986 -8.3878 4.0808 36 1 6.6230 -5.1035 7.2856 37 1 8.4590 -5.7609 9.0363 38 1 5.4822 -5.1130 5.5689 39 1 4.1284 -5.1303 3.5183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815222221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:36 Heat of formation + Delta-G solvation = -0.781774 kcal Electronic energy + Delta-G solvation = -24393.361814 eV Core-core repulsion = 20497.034756 eV Total energy + Delta-G solvation = -3896.327058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64542 -40.68937 -39.29156 -37.14284 -36.11960 -34.92245 -32.83501 -32.01397 -31.10273 -30.73398 -29.79644 -27.02168 -25.56774 -23.93530 -23.12895 -22.44369 -22.00355 -21.59457 -20.95028 -19.07251 -18.16751 -17.08599 -16.60341 -16.41902 -16.29626 -15.73625 -15.64042 -15.39833 -14.92522 -14.73675 -14.61188 -14.35259 -14.06084 -13.85281 -13.62654 -13.18722 -12.94557 -12.68594 -12.35097 -12.02768 -11.68726 -11.55622 -11.52781 -11.47135 -11.02254 -10.92299 -10.83336 -10.59934 -10.47474 -10.11218 -9.90056 -9.63273 -9.20418 -8.98323 -8.93973 -8.27792 -6.17404 -4.19449 -0.24411 0.78522 1.10538 1.61548 2.08910 2.34004 2.56725 3.27576 3.30789 3.31052 3.34301 3.86183 3.99010 4.26527 4.27832 4.36630 4.49926 4.59491 4.66429 4.68837 4.76688 4.98127 5.07280 5.13638 5.19170 5.37713 5.46436 5.48497 5.58345 5.74770 5.78574 5.83744 5.91100 5.97231 6.01967 6.35199 6.42439 6.98653 7.33158 7.64554 7.66380 7.72060 8.06368 8.45445 8.92608 9.45487 10.93999 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.012418 B = 0.002548 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.286707 B =10984.440391 C =12837.001783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.335 6.335 14 C 0.507 3.493 15 O -0.509 6.509 16 C -0.119 4.119 17 C -0.033 4.033 18 C -0.122 4.122 19 C 0.168 3.832 20 N -0.322 5.322 21 C 0.027 3.973 22 C -0.072 4.072 23 N -0.230 5.230 24 N -0.061 5.061 25 C -0.139 4.139 26 C -0.031 4.031 27 H 0.265 0.735 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.200 0.800 37 H 0.192 0.808 38 H 0.143 0.857 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.321 -14.232 12.707 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.002 3.998 13 O -0.251 6.251 14 C 0.352 3.648 15 O -0.399 6.399 16 C -0.121 4.121 17 C -0.052 4.052 18 C -0.142 4.142 19 C 0.075 3.925 20 N -0.103 5.103 21 C -0.122 4.122 22 C -0.227 4.227 23 N -0.100 5.100 24 N -0.039 5.039 25 C -0.160 4.160 26 C -0.050 4.050 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.216 0.784 37 H 0.209 0.791 38 H 0.161 0.839 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 11.298 -15.466 12.002 22.603 hybrid contribution -0.733 1.777 0.176 1.930 sum 10.565 -13.690 12.178 21.150 Atomic orbital electron populations 1.69947 1.06102 1.27362 1.50317 1.24946 0.94989 0.99448 0.95070 0.86386 0.79313 0.81843 0.78882 1.19995 1.21125 1.19985 1.20998 0.94042 0.89284 1.51142 0.91575 1.20234 0.88718 0.83442 0.95530 1.87916 1.35344 1.12600 1.95239 1.22330 0.93183 0.85437 1.00707 1.23283 0.93623 0.98999 0.83883 1.86627 1.43068 1.53505 1.41897 1.20956 0.78996 0.78424 0.86424 1.90832 1.68078 1.38104 1.42879 1.19330 0.98661 1.00140 0.93921 1.21199 0.91313 0.96135 0.96505 1.20845 1.01717 0.99305 0.92365 1.17854 0.92059 0.97922 0.84617 1.48054 1.24695 1.24423 1.13149 1.23682 1.02631 0.98036 0.87880 1.23316 0.96889 0.99250 1.03198 1.74367 1.21026 1.11412 1.03169 1.82152 0.98960 1.12855 1.09928 1.20901 0.95494 0.99575 1.00065 1.21500 0.97461 0.95747 0.90304 0.92531 0.97588 0.97493 0.91779 0.93115 0.90242 0.90185 0.83098 0.83326 0.78355 0.79060 0.83893 0.82313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.79 9.43 -34.44 -0.32 -15.11 16 8 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.19 5.14 5.69 36.00 0.20 5.34 16 10 O -0.39 -9.02 10.30 -38.80 -0.40 -9.42 16 11 C 0.06 1.04 6.33 37.15 0.24 1.28 16 12 C 0.08 1.11 5.85 37.15 0.22 1.33 16 13 O -0.34 -5.11 9.43 -43.38 -0.41 -5.51 16 14 C 0.51 7.07 7.89 34.53 0.27 7.34 16 15 O -0.51 -7.95 16.13 -19.26 -0.31 -8.26 16 16 C -0.12 -1.32 5.87 -104.97 -0.62 -1.94 16 17 C -0.03 -0.31 9.59 -39.20 -0.38 -0.69 16 18 C -0.12 -1.10 9.66 -39.47 -0.38 -1.48 16 19 C 0.17 1.52 6.70 -83.57 -0.56 0.96 16 20 N -0.32 -3.02 3.85 -10.50 -0.04 -3.06 16 21 C 0.03 0.18 10.92 -16.72 -0.18 0.00 16 22 C -0.07 -0.53 11.86 -18.04 -0.21 -0.74 16 23 N -0.23 -2.52 12.33 30.09 0.37 -2.15 16 24 N -0.06 -0.70 13.15 60.35 0.79 0.09 16 25 C -0.14 -1.10 9.46 -39.47 -0.37 -1.47 16 26 C -0.03 -0.30 9.61 -39.21 -0.38 -0.68 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.15 1.32 7.64 -52.49 -0.40 0.91 16 35 H 0.15 1.22 7.72 -52.49 -0.41 0.82 16 36 H 0.20 0.49 7.16 -52.49 -0.38 0.12 16 37 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.72 6.82 -52.49 -0.36 0.36 16 39 H 0.16 1.52 7.60 -52.48 -0.40 1.12 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -34.71 353.62 -5.97 -40.67 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -4.44 Total: -4.16 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.57 Total: -4.36 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 1.86 Total: -30.56 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -1.12 Total: -23.19 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.71 -5.97 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815222221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.891 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds