Wall clock time and date at job start Tue Mar 31 2020 11:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99955 * 2 1 4 4 H 1.48502 * 109.46986 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.46998 * 29.99547 * 3 2 1 6 6 H 1.48503 * 109.47247 * 149.99689 * 3 2 1 7 7 C 1.37874 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00311 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00100 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47446 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00183 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46997 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47092 * 64.99713 * 12 11 10 14 14 C 1.34773 * 116.99683 * 179.97438 * 13 12 11 15 15 O 1.21540 * 120.00239 * 0.02562 * 14 13 12 16 16 C 1.47176 * 119.99758 * 179.97438 * 14 13 12 17 17 C 1.37990 * 126.81760 * 0.03009 * 16 14 13 18 18 N 1.34156 * 107.88733 * 179.97438 * 17 16 14 19 19 H 0.96998 * 125.16151 * 180.02562 * 18 17 16 20 20 N 1.39775 * 109.68865 * 359.97438 * 18 17 16 21 21 C 1.31370 * 109.08328 * 0.02562 * 20 18 17 22 22 C 1.48244 * 126.51102 * 179.97438 * 21 20 18 23 23 C 1.39382 * 119.73039 * 334.75455 * 22 21 20 24 24 C 1.38392 * 119.06028 * 179.79487 * 23 22 21 25 25 C 1.38790 * 118.51571 * 0.46813 * 24 23 22 26 26 C 1.38259 * 119.37594 * 359.74744 * 25 24 23 27 27 N 1.31756 * 120.89783 * 0.02718 * 26 25 24 28 28 H 0.97000 * 120.00745 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46997 * 60.00169 * 9 7 2 30 30 H 1.09003 * 109.47101 * 300.00293 * 9 7 2 31 31 H 1.08995 * 109.47775 * 59.99683 * 11 10 9 32 32 H 1.09001 * 109.46959 * 299.99809 * 11 10 9 33 33 H 1.08993 * 109.47073 * 304.99552 * 12 11 10 34 34 H 1.09001 * 109.46985 * 184.99757 * 12 11 10 35 35 H 1.08003 * 126.05636 * 359.97438 * 17 16 14 36 36 H 1.07997 * 120.47331 * 0.02562 * 23 22 21 37 37 H 1.07997 * 120.74123 * 180.23947 * 24 23 22 38 38 H 1.08002 * 120.31447 * 179.72909 * 25 24 23 39 39 H 1.07997 * 119.55286 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9879 -2.5412 0.0010 11 6 5.4124 -2.6540 0.0021 12 6 5.8069 -4.1323 0.0025 13 8 5.3737 -4.7492 -1.2384 14 6 5.6467 -6.0593 -1.3983 15 8 6.2306 -6.6695 -0.5243 16 6 5.2369 -6.7512 -2.6309 17 6 4.5711 -6.1998 -3.7065 18 7 4.3898 -7.1667 -4.6186 19 1 3.9472 -7.0518 -5.4740 20 7 4.9365 -8.3647 -4.1499 21 6 5.4559 -8.1634 -2.9602 22 6 6.1343 -9.1721 -2.1118 23 6 5.8308 -10.5235 -2.2680 24 6 6.4756 -11.4537 -1.4716 25 6 7.3965 -11.0011 -0.5371 26 6 7.6460 -9.6452 -0.4324 27 7 7.0216 -8.7806 -1.2061 28 1 -0.4851 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8912 30 1 3.8752 -0.6803 -0.8888 31 1 5.8145 -2.1708 0.8925 32 1 5.8159 -2.1701 -0.8874 33 1 5.3306 -4.6352 0.8440 34 1 6.8897 -4.2193 0.0929 35 1 4.2524 -5.1719 -3.7978 36 1 5.1056 -10.8405 -3.0027 37 1 6.2640 -12.5079 -1.5724 38 1 7.9132 -11.7013 0.1025 39 1 8.3617 -9.2898 0.2941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815247708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:02 Heat of formation + Delta-G solvation = -5.569041 kcal Electronic energy + Delta-G solvation = -24992.786454 eV Core-core repulsion = 21096.251805 eV Total energy + Delta-G solvation = -3896.534650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42116 -39.96729 -39.56649 -37.04689 -35.72496 -33.23309 -32.69595 -32.57120 -31.07084 -30.30107 -29.83560 -27.54585 -24.57469 -23.98362 -23.55937 -22.07807 -21.82569 -20.92842 -20.13326 -18.41036 -17.15800 -16.95338 -16.88030 -16.32784 -16.15737 -15.81287 -15.68674 -15.38529 -14.87710 -14.69316 -14.34006 -14.24310 -13.89391 -13.50766 -13.34005 -12.95806 -12.79903 -12.46444 -12.23996 -12.01385 -11.67181 -11.39438 -11.10976 -10.85600 -10.62433 -10.56265 -10.25283 -10.15486 -9.92105 -9.86909 -9.33067 -9.20313 -9.18376 -8.89126 -8.79399 -8.50060 -6.12819 -4.11991 0.53332 1.14407 1.31329 2.00620 2.29555 2.99856 3.23298 3.30607 3.31716 3.32105 3.76429 3.80643 4.29325 4.33953 4.55399 4.58832 4.66837 4.83176 4.89731 4.97266 5.17825 5.18349 5.28284 5.30829 5.35355 5.50072 5.54968 5.76721 5.79358 5.88749 5.91530 6.01379 6.11760 6.46750 6.56983 6.78744 6.82531 6.97514 7.12066 7.57515 7.89628 7.97405 8.24605 8.64092 8.99013 9.46209 11.00193 Molecular weight = 317.12amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.002576 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.631205 B =10865.166639 C =11585.038986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.080 3.920 13 O -0.348 6.348 14 C 0.529 3.471 15 O -0.478 6.478 16 C -0.248 4.248 17 C 0.138 3.862 18 N -0.460 5.460 19 H 0.448 0.552 20 N -0.276 5.276 21 C 0.176 3.824 22 C 0.185 3.815 23 C -0.139 4.139 24 C -0.084 4.084 25 C -0.165 4.165 26 C 0.102 3.898 27 N -0.414 5.414 28 H 0.266 0.734 29 H 0.004 0.996 30 H 0.000 1.000 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.204 0.796 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.502 -19.717 -7.296 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.294 6.294 11 C -0.020 4.020 12 C 0.006 3.994 13 O -0.265 6.265 14 C 0.372 3.628 15 O -0.364 6.364 16 C -0.262 4.262 17 C -0.013 4.013 18 N -0.166 5.166 19 H 0.294 0.706 20 N -0.098 5.098 21 C 0.007 3.993 22 C 0.047 3.953 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.186 4.186 26 C -0.057 4.057 27 N -0.123 5.123 28 H 0.076 0.924 29 H 0.021 0.979 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.221 0.779 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 15.342 -19.831 -7.835 26.269 hybrid contribution 0.186 1.027 0.198 1.062 sum 15.528 -18.804 -7.637 25.554 Atomic orbital electron populations 1.69870 1.06067 1.27097 1.50350 1.24770 0.94808 0.98754 0.94665 0.86848 0.80362 0.83753 0.78762 1.19928 1.20792 1.19072 1.20887 0.88253 0.95335 1.51177 0.89937 1.20625 0.96255 0.79422 0.94422 1.87981 1.16828 1.29547 1.95070 1.22412 0.85908 0.93193 1.00465 1.23061 0.99054 0.92667 0.84593 1.86598 1.74463 1.24080 1.41375 1.19757 0.76751 0.80470 0.85863 1.90913 1.37434 1.66284 1.41816 1.20348 1.15727 0.93037 0.97050 1.23416 0.93740 0.95963 0.88131 1.45947 1.46388 1.06086 1.18173 0.70641 1.77256 1.16904 1.04069 1.11618 1.21267 0.95734 0.91048 0.91223 1.18357 0.94791 0.88848 0.93303 1.22081 1.00809 0.92775 1.00376 1.21491 0.95006 1.00085 0.94451 1.22311 0.99131 0.97667 0.99451 1.22805 0.97092 0.89025 0.96753 1.67864 1.04673 1.37861 1.01923 0.92356 0.97881 0.98233 0.91974 0.93158 0.90569 0.90393 0.77928 0.84391 0.84556 0.84664 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -15.36 9.99 -34.44 -0.34 -15.70 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.17 4.22 4.76 36.01 0.17 4.40 16 10 O -0.38 -8.74 10.30 -38.80 -0.40 -9.14 16 11 C 0.06 1.00 6.33 37.16 0.24 1.24 16 12 C 0.08 1.27 5.86 37.16 0.22 1.49 16 13 O -0.35 -5.90 10.03 -43.47 -0.44 -6.33 16 14 C 0.53 8.79 7.95 34.36 0.27 9.06 16 15 O -0.48 -8.63 13.46 -19.30 -0.26 -8.89 16 16 C -0.25 -3.57 6.30 -102.97 -0.65 -4.22 16 17 C 0.14 1.47 11.84 -16.63 -0.20 1.27 16 18 N -0.46 -4.18 7.20 30.82 0.22 -3.96 16 19 H 0.45 2.26 8.96 -182.84 -1.64 0.62 16 20 N -0.28 -3.31 12.53 34.58 0.43 -2.88 16 21 C 0.18 2.44 7.11 -80.56 -0.57 1.87 16 22 C 0.19 2.51 6.63 -82.96 -0.55 1.96 16 23 C -0.14 -1.46 9.75 -39.10 -0.38 -1.84 16 24 C -0.08 -0.70 10.17 -39.32 -0.40 -1.10 16 25 C -0.17 -1.35 10.11 -39.37 -0.40 -1.75 16 26 C 0.10 1.10 11.17 -17.58 -0.20 0.90 16 27 N -0.41 -5.90 7.06 -9.79 -0.07 -5.97 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 30 H 0.00 0.00 7.57 -51.93 -0.39 -0.39 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.14 1.25 8.04 -52.49 -0.42 0.83 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -37.46 349.14 -7.83 -45.29 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -5.80 Total: -2.73 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.89 Total: -0.42 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 1.36 Total: -39.52 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.10 Total: -24.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.46 -7.83 -45.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815247708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.719 kcal (2) G-P(sol) polarization free energy of solvation -37.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds